Role of an LRR receptor-like kinase in the establishment of a functional root endodermal barrier

The endodermis is a highly conserved cell layer present in the root of all vascular plants, except Lycophytes. This tissue layer establishes a protective diffusion barrier surrounding the vasculature and is expected to prevent passive, uncontrolled flow of nutrients through the root. This barrier property is achieved by the production of Casparian strips (CS), a localized cell wall impregnation of lignin in the anticlinal walls of each endodermal cell, forming a belt-like structure sealing the extracellular space. The CS act as a selective barrier between the external cell layers and the vascular cylinder and are thought to be important in many aspects of root function. For instance, selective nutrient uptake and sequestration from the soil, resistance to different abiotic and biotic stresses are expected to involve functional CS. Although discovered 150 years ago, nothing was known about the genes involved in CS establishment until recently. The use of the model plant Arabidopsis thaliana together with both reverse and forward genetic approaches led to the discovery of an increasing number of genes involved in different steps of CS formation during the last few years. One of these genes encodes SCHENGEN3 (SGN3), a leucine-rich repeat receptor-like kinase (LRR-RLK). SGN3 was discovered first by reverse genetic due to its endodermis-enriched expression, and the corresponding mutant displays strong endodermal permeability of the apoplastic tracer Propidium Iodide (PI) indicative of defective CS. One aim of this thesis is to study the role of SGN3 at the molecular level in order to understand its involvement in establishing an impermeable CS. The endodermal permeability of sgn3 is shown to be the result of incorrect localization of key proteins involved in CS establishment (the "Casparian strip domain proteins", CASPs), leading to non-functional CS interrupted by discontinuities. CASPs localize in the plasma membrane domain subjacent to the CS, named the Casparian Strip membrane Domain (CSD). The CSD discontinuities in sgn3 together with SGN3 localization in close proximity to the CASPs lead to the assumption that SGN3 is involved in the formation of a continuous CSD. In addition, SGN3 might have a second role, acting as a kinase reporting CSD integrity leading to lignin and suberin production in CSD/CS defective plants. Up to now, sgn3 is the strongest and most specific CS mutant available, displaying tracer penetration along the whole length of the seedling root. For this reason, this mutant is well suited in order to characterize the physiological behaviour of CS affected plants. Due to the lack of such mutants in the past, it was not possible to test the presumed functions of CS by using plants lacking this structure. We decided to use sgn3 for this purpose. Surprisingly, sgn3 overall growth is only slightly affected. Nevertheless, processes expected to rely on functional CS, such as water transport through the root, nutrient homeostasis, salt tolerance and resistance to an excess of some nutrients are altered in this mutant. On the other hand, homeostasis for most elements and drought tolerance are not affected in sgn3. It is surprising to observe that homeostatic defects are specific, with a decrease in potassium and an increase in magnesium levels. It indicates a backup system, set up by the plant in order to counteract free diffusion of nutrients into the stele. For instance, potassium shortage in sgn3 upregulates the transcription of potassium influx transport proteins and genes known to be induced by potassium starvation. Moreover, sgn3 mutant is hypersensitive to low potassium conditions. Hopefully, these results about SGN3 will help our understanding of CS establishment at the molecular level. In addition, physiological experiments using sgn3 should give us a framework for future experiments and help us to understand the different roles of CS and their involvement during nutrient radial transport through the root. -- L'endoderme est un tissu présent dans les racines de toutes les plantes vasculaires à l'exception des Lycophytes. Ce tissu établit une barrière protectrice entourant les tissus vasculaires dans le but d'éviter la diffusion passive et incontrôlée des nutriments au travers de la racine. Cette propriété de barrière provient de la production des cadres de Caspary, une imprégnation localisée de lignine des parties anticlinales de la paroi de chaque cellule d'endoderme. Cela donne naissance à un anneau/cadre qui rend étanche l'espace extracellulaire. Les cadres de Caspary agissent comme une barrière sélective entre les couches externes de la racine et le cylindre central et sont supposés être importants dans beaucoup d'aspects du fonctionnement de la racine. Par exemple, l'absorption sélective de nutriments et leur séquestration à partir du sol ainsi que la résistance contre différents stress abiotiques et biotiques sont supposés impliquer des cadres de Caspary fonctionnels. Bien que découverts il y a 150 ans, rien n'était connu concernant les gènes impliqués dans Ja formation des cadres de Caspary jusqu'à récemment. Durant ces dernière années, l'utilisation de la plante modèle Arabidopsis thaliana ainsi que des approches de génétique inverse et classique ont permis la découverte d'un nombre croissant de gènes impliqués à différentes étapes de la formation de cette structure. Un des ces gènes code pour SCHENGEN3 (SGN3), un récepteur kinase "leucine-rich repeat receptor-like kinase" (LRR-RLK). SGN3 a été découvert en premier par génétique inverse grâce à son expression enrichie dans l'endoderme. Les cadres de Caspary ne sont pas fonctionnels dans le mutant correspondant, ce qui est visible à cause de la perméabilité de l'endoderme au traceur apoplastique Propidium Iodide (PI). Un des objectifs de cette thèse est d'étudier la fonction de SGN3 au niveau moléculaire dans le but de comprendre son rôle dans la formation des cadres de Caspary. J'ai pu démontrer que la perméabilité de l'endoderme du mutant sgn3 est le résultat de la localisation incorrecte de protéines impliquées dans la formation des cadres de Caspary, les "Casparian strip domain proteins" (CASPs). Cela induit des cadres de Caspary non fonctionnels, contenant de nombreuses interruptions. Les CASPs sont localisés à la membrane plasmique dans un domaine sous-jacent les cadres de Caspary appelé Casparian Strip membrane Domain (CSD). Les interruptions du CSD dans le mutant sgn3, ainsi que la localisation de SGN3 à proximité des CASPs nous font penser à un rôle de SGN3 dans l'élaboration d'un CSD ininterrompu. De plus, SGN3 pourrait avoir un second rôle, agissant en tant que kinase reportant l'intégrité du CSD et induisant la production de lignine et de subérine dans des plantes contenant des cadres de Caspary non fonctionnels. Jusqu'à ce jour, sgn3 est le mutant en notre possession le plus fort et le plus spécifique, ayant un endoderme perméable tout le long de la racine. Pour cette raison, ce mutant est adéquat dans le but de caractériser la physiologie de plantes ayant des cadres de Caspary affectés. De manière surprenante, la croissance de sgn3 est seulement peu affectée. Néanmoins, des processus censés nécessiter des cadres de Caspary fonctionnels, comme le transport de l'eau au travers de la racine, l'homéostasie des nutriments, la tolérance au sel et la résistance à l'excès de certains nutriments sont altérés dans ce mutant. Malgré tout, l'homéostasie de la plupart des nutriments ainsi que la résistance au stress hydrique ne sont pas affectés dans sgn3. De manière surprenante, les altérations de l'ionome de sgn3 sont spécifiques, avec une diminution de potassium et un excès de magnésium. Cela implique un système de compensation établi par la plante dans le but d'éviter la diffusion passive des nutriments en direction du cylindre central. Par exemple, le manque de potassium dans sgn3 augmente la transcription de transporteurs permettant l'absorption de cet élément. De plus, des gènes connus pour être induits en cas de carence en potassium sont surexprimés dans sgn3 et la croissance de ce mutant est sévèrement affectée dans un substrat pauvre en potassium. Ces résultats concernant SGN3 vont, espérons-le, aider à la compréhension du processus de formation des cadres de Caspary au niveau moléculaire. De plus, les expériences de physiologie utilisant sgn3 présentées dans cette thèse devraient nous donner une base pour des expériences futures et nous permettre de comprendre mieux le rôle des cadres de Caspary, et plus particulièrement leur implication dans le transport radial des nutriments au travers de la racine. -- Les plantes terrestres sont des organismes puisant l'eau et les nutriments dont elles ont besoin pour leur croissance dans le sol grâce à leurs racines. De par leur immobilité, elles doivent s'adapter à des sols contenant des quantités variables de nutriments et il leur est crucial de sélectionner ce dont elles ont besoin afin de ne pas s'intoxiquer. Cette sélection est faite grâce à un filtre formé d'un tissu racinaire interne appelé endoderme. L'endoderme fabrique une barrière imperméable entourant chaque cellule appelée "cadre de Caspary". Ces cadres de Caspary empêchent le libre passage des nutriments, permettant un contrôle précis de leur passage. De plus, ils sont censés permettre de résister contre différents stress environnementaux comme la sécheresse, la salinité du sol ou l'excès de nutriments. Bien que découverts il y a 150 ans, rien n'était connu concernant les gènes impliqués dans la formation des cadres de Caspary jusqu'à récemment. Durant ces dernière années, l'utilisation de la plante modèle Arabidopsis thaliana a permis la découverte d'un nombre croissant de gènes impliqués à différentes étapes de la formation de cette structure. Un de ces gènes code pour SCHENGEN3 (SGN3), un récepteur kinase "leucine-rich repeat receptor-like kinase" (LRR- RLK). Nous montrons dans cette étude que le gène SGN3 est impliqué dans la formation des cadres de Caspary, et que le mutant correspondant sgn3 a des cadres de Caspary interrompus. Ces interruptions rendent l'endoderme perméable, l'empêchant de bloquer le passage des molécules depuis le sol vers le centre de la racine. En utilisant ce mutant, nous avons pu caractériser la physiologie de plantes ayant des cadres de Caspary affectés. Cela a permis de découvrir que le transport de l'eau au travers de la racine était affecté dans le mutant sgn3. De plus, l'accumulation de certains éléments dans les feuilles de ce mutant est altérée. Nous avons également pu montrer une sensibilité de ce mutant à un excès de sel ou de certains nutriments comme le fer et le manganèse.

Concerted changes in N and C primary metabolism in alfalfa (Medicago sativa) under water restriction

Although the mechanisms of nodule N2 fixation in legumes are now well documented, some uncertainty remains on the metabolic consequences of water deficit. In most cases, little consideration is given to other organs and, therefore, the coordinated changes in metabolism in leaves, roots, and nodules are not well known. Here, the effect of water restriction on exclusively N2-fixing alfalfa (Medicago sativa L.) plants was investigated, and proteomic, metabolomic, and physiological analyses were carried out. It is shown that the inhibition of nitrogenase activity caused by water restriction was accompanied by concerted alterations in metabolic pathways in nodules, leaves, and roots. The data suggest that nodule metabolism and metabolic exchange between plant organs nearly reached homeostasis in asparagine synthesis and partitioning, as well as the N demand from leaves. Typically, there was (i) a stimulation of the anaplerotic pathway to sustain the provision of C skeletons for amino acid (e.g. glutamate and proline) synthesis; (ii) re-allocation of glycolytic products to alanine and serine/glycine; and (iii) subtle changes in redox metabolites suggesting the implication of a slight oxidative stress. Furthermore, water restriction caused little change in both photosynthetic efficiency and respiratory cost of N2 fixation by nodules. In other words, the results suggest that under water stress, nodule metabolism follows a compromise between physiological imperatives (N demand, oxidative stress) and the lower input to sustain catabolism.

Diversité des champignons endophytes mycorhiziens et de classe II chez le pois chiche, et influence du génotype de la plante

réalisé en cotutelle avec la Faculté des Sciences de Tunis, Université Tunis El Manar.

Sainfoin (Onobrychis viciifolia): a beneficial forage legume

The Onobrychis genus comprises a few agronomically important forage legume species, with sainfoin (Onobrychis viciifolia) being the most widespread. O. viciifolia has a long history of traditional culture worldwide, but its use has declined in western countries over the last decades. It suffers from low productivity and is more difficult to maintain than other legumes but is known to have valuable characteristics such as palatability and drought tolerance. Recent studies suggest that it has several other highly beneficial properties due to its unique tannin and polyphenol composition. Condensed tannins present in Onobrychis species have been shown to confer anthelmintic properties, increase protein utilization and prevent bloating; they may also have the potential to reduce greenhouse gas emissions. Positive effects on wildlife and honey production could also be advantageous in the context of sustainable farming. Modern breeding programmes have not been a priority, leading to a lack of genetic knowledge in comparison to extensively used forage legumes. It is expected that potential for O. viciifolia improvements could be achieved by rigorous characterization of the available germplasm and utilization of characters derived from close relatives of the genus. Breeding priorities for the future would include enhanced germination and improved early establishment, allied to the best anthelmintic properties observed in some varieties.

Alterações morfológicas foliares em cultivares de cana-de-açúcar em resposta à deficiência hídrica

The aim of this study was to determine the response of morphological traits of four tolerant and susceptible sugarcane cultivars (SP81-3250, SP83-2847, RB855453 and RB72454) related to two water regimes. At 84 days after emergence the plants were submitted to water availability treatments (no water deficiency and water deficiency), and evaluated in three periods: zero, 28 and 56 days, after implantation of these treatments (DAT). The cultivars SP81-3250 and SP83-2847, when subjected to water stress for prolonged periods in early development, present higher leaf width, less damage to the green leaf number and leaf area, an increase in stomatal density in adaxial and abaxial leaf surface, and higher production of dry matter, and therefore were considered tolerant. The leaf +3 length not allowed to characterize the varieties to drought tolerance.

Doses e épocas de aplicação de nitrogênio em cobertura na cultura do painço (Panicum miliaceum L.)

A cultura do painço é uma opção interessante tanto para a formação de palha para cobertura do solo como para a produção de grãos, pelo seu rápido crescimento, tolerância à seca e ciclo curto. No entanto, são escassas as informações sobre o manejo da adubação nitrogenada para essa cultura. Objetivou-se, neste estudo, avaliar o efeito de doses e épocas de aplicação de nitrogênio em cobertura nas características agronômicas e produtividade de grãos do painço. O delineamento experimental foi o de blocos ao acaso, em esquema fatorial 4x2, constituído pela combinação de quatro doses (0, 30, 60 e 120 kg ha-1 de N) e duas épocas de aplicação (14 e 28 dias após a emergência - DAE) do fertilizante nitrogenado (uréia) em cobertura, com quatro repetições. A adubação nitrogenada em cobertura promoveu aumento na altura da planta, comprimento da panícula e produtividade de grãos da cultura do painço, independentemente da época de aplicação. O número de grãos por panícula foi incrementado pela adubação nitrogenada apenas com a aplicação que foi realizada aos 14 DAE. A aplicação de N em cobertura, aos 14 dias após a emergência, proporcionou acréscimos nas características agronômicas, até a dose de 120 kg ha-1 (maior dose), acarretando aumento da produtividade de grãos do painço.

Early development and nutrition of cover crop species as affected by soil compaction

A good cover crop should have a vigorous early development and a high potential for nutrient uptake that can be made available to the next crop. In tropical areas with relatively dry winters drought tolerance is also very important. An experiment was conducted to evaluate the early development and nutrition of six species used as cover crops as affected by sub-superficial compaction of the soil. The plants (oats, pigeon pea, pearl millet, black mucuna, grain sorghum, and blue lupin) were grown in pots filled with soil subjected to different subsurface compaction levels (bulk densities of 1.12, 1.16, and 1.60 mg m(-3)) for 39 days. The pots had an internal diameter of 10 cm and were 33.5 cm deep. Grasses were more sensitive to soil compaction than leguminous plants during the initial development. Irrespective of compaction rates, pearl millet and grain sorghum were more efficient in recycling nutrients. These two species proved to be more appropriate as cover crops in tropical regions with dry winters, especially if planted shortly before spring.

Parâmetros fisiológicos de cultivares de cevada sob déficits hídricos

The objective of this study was to evaluate some physiological parameters in six barley cultivars (Borema, Lagoa, BRS-180, BRS-195, EMB-128 e BRS-225), under water stress in different crop phenological phases. The treatments were as follows: TI - pots constantly irrigated until harvest: T2: - water stress starting from 45 days after sowing (DAS) and T3 - water stress starting from 65 DAS. Leaf resistance to water vapor diffusion (Rs), relative water content (RWC), and leaf water potential (Ψ1) were used to evaluate drought tolerance. Pots were arranged in a randomized block design with four blocks, six barley cultivars, and three treatments, in a total of seventy two pots. The experiment was conducted from August to November 2005 in a polyethylene greenhouse located at the experimental area of Rural Engineering Department - FCA, UNESP - Botucatu - SP. The results showed that all barley cultivars presented some adaptation to water stress, but EMB-128 was the most likely and BRS-180 the least likely to be drought tolerant. The results revealed that only one drought cycle may increase tolerance to drought.

Análise de crescimento em clones de eucalipto submetidos a estresse hídrico

The aim of this study was to evaluate Eucaliptus grandis genotypes (Clones 105 and 433) in relation to drought tolerance, through growth plant analysis. Black PVC pots with 10 liter volume were used for cultivate plants in polyethilene greenhouse oriented east/west. Completely randonmized design with four treatments was used: two clones and two minimum soil water potentials (- 0.03 and -1,5 MPa) and sixteen replicates. Pots were weighed daily in order to evaluate water content and characteristic soli water curve was determined. Plant development was obtained each 15 days from planting until 60 days through total dry matter (DM), leaf area index (LAI), leaf area ratio (LAR), net assimilative ratio (NAR), specific leaf area (SLA), relative growth ratio (RGR) and absolute growth ratio (AGR). Results showed that clone 105 presented less sensibility to water deficit, which qualify it as genetic material for use under dry soil conditons. On the other hand, both clones had similar behavior with no water restrictions.

Aspectos fisiológicos e bioquímicos de cultivares de soja submetidos a déficit hídrico induzido por peg 6000

In soybean culture water deficit is one of the most limiting factors to the maximum yield obtained. Genotypes identification with drought tolerance capacity is fundamental to solve this problem. The objective in this paper was analyze the physiological quality and physiological and biochemical responses of soybeans cultivars (MG/BR 46 Conquista, UFUS Carajás, UFUS Impacta, UFUS Riqueza and UFUS Xavante) submitted to water stress with PEG 6000 solutions in different levels of osmotic potentials (0; -0,1; -0,2; -0,3 and -0,4 MPa). Physiological quality of cultivars were evaluated by seedling length test and fresh and dry biomass. The biochemical responses were evaluated by detection of indol-acetic acid (IAA), by saccharose content and seedling water transportation. UFUS Riqueza presented the best performance in physiological quality tests, saccharose content, absorption and water absorption velocity in seedling. UFUS Xavante showed the highest IAA's concentration and the greater weight of seedling in water transportation test.

O modelo 'hydrotime' pode descrever a resposta de sementes de feijão comum (phaseolus vulgaris l.) à temperatura e potenciais de água reduzidos

Germination parameters of the response to temperature and water potential from four common bean (Phaseolus vulgaris) lines based on thermal-time and hydrotime concepts were estimated to verify to what extent they can predict germination under different thermal and water conditions. The cultivars IPR Uirapuru and IAPAR 81 (drought-tolerant), and Grauna and Carioca (not tolerant) were used. The isothermal assays were performed in a temperature gradient block, and the assays with different osmotic potentials (PEG 6000) were performed in germination chambers. Seeds from drought-tolerant cultivars spent less time to germinate at supra-optimum temperatures than non-tolerant ones, and the cultivar Uirapuru (drought-tolerant) germinated faster in response to reduced Ψ and low temperatures. The parameter Ψb(50) did not discriminate between drought-tolerant and non-tolerant lines at the infraoptimum temperature range, but it can be used to identify drought-tolerant lines at high temperatures. In general, the hydrotime model reproduced the actual germination data relatively well, chiefly at higher temperatures. This study evidenced that the hydrotime model can be used to describe the germination of common bean seeds under reduced water potentials, and as a screening tool for drought-tolerant bean genotypes.

Tolerância à deficiência hídrica em cultivares de cana-de-açúcar avaliada por meio de variáveis morfofisiológicas

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Resposta de plantas de cobertura a doses de silício e estresse hídrico

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Alterações bioquímicas, morfofisiológicas e produtivas em genótipos de arroz em dois regimes hídricos

Pós-graduação em Agronomia (Agricultura) - FCA

Características morfofisiológicas e agrupamento genético de cana-de-açúcar sob deficiência hídrica

Pós-graduação em Agronomia (Agricultura) - FCA