The bacteriology of oil sardine (Sardinella longiceps) and mackerel (Rastrelliger kanagurta) caught from tropical waters off Cochin. 1 - Quantitative aspects

The total aerobic viable plate counts (TPCs) of skin, gills and intestine of newly caught oil sardine (Sardinella longiceps) and Indian mackerel ( Rastrelliger kanagurta) at four different temperatures, namely 36 ± 1°C, 28 ± 2°C (RT), 8 ± 1°C and 1 ±1°C, are reported. The total plate count at RT of the skin of oil sardine and Indian mackerel were in the range of l0 super(3) to 10 super(7) and 10 super(4) to 10 super(6) per cm², that of gills in the range of 10 super(5) to 10 super(9) and 10 super(4) to 10 super(8) per g and that intestine in the range of 10 super(5) to 10 sueper(9) and 10 super(5) to 10 super(8) per g respectively. The TPCs were markedly affected by the incubation temperature. Incubation at 28 ± 2°C gave the highest count; at 36 ± 1°C and 8 ± 1°C, the counts decreased by nearly 1-2 log cycles from that at RT. Incubation at 1 ± 1°C registered the lowest count. The peak values for bacterial counts of these fishes occurred at different periods of the year.

The bacteriology of oil sardine (Sardinella longiceps) and mackerel (Rastrelliger kanagurta) from tropical waters off Cochin. 2. Qualitative aspects

80% of the flora of skin, gills and intestines of oil sardine and mackerel at isolation temperature 28 ± 2°C consisted of Gram negative asporogenous rods or cocci, belonging to the genera Vibrio, Pseudomonas, Moraxella, Acinetobacter and Flavobacteria/Cytophaga. Nearly 10% of the flora was constituted by Gram positives, Micrococcus and Arthrobacter. Incubation temperature of 36 ± 1°C recovered more Vibrio spp. and Gram positives, while at lower temperatures of 8 ± 1°C and 1 ± 1°C, more Pseudomonas, Acinetobacter and Moraxella spp. were recovered. Significant changes with respect to season were observed in the relative distribution of different genera.

Observations on the durability of fifteen species of CCA treated timber in the Cochin harbour

Observations on the durability of fifteen species of common Indian timber treated with CCA at two absorption levels, for eight years are presented. CCA treatment has improved the durability of this timber to a great extent. T. grandis, D. indicus and X. xylocarpa give maximum durability on treatment with CCA. Less durable A. kurzi, T. nudiflora and P. longifolia when treated with CCA showed results comparable to the best species.

Assessment of quality of fish landed at the Cochin fisheries harbour

Assessment of quality of fish and shrimps landed at the fish harbour, Cochin, was made over the period January, 1980 to December, 1982. A total of 201 samples were analysed. Nearly 75% of the samples scored between 6-10 in a 10 point hedonic scale and the percentage unacceptability based on sensory assessment was 5. 5%. In 10.1% of the samples, total volatile nitrogen was >30 mg% and in 8.3% of the samples trimethylamine- nitrogen was >10 mg%. Both, the gr Torrymeter and Intellectron Fish Tester VI readings marked significant correlation with sensory scores and chemical indices; but failed to bear any significant correlation with bacterial counts. Of the 5-1 total samples 66.7% had total plate count (TPC) ≥10 super(5) g super(-1) and 8.5% were considered unacceptable based on TPC >5x10 super(5) g super(-1); 63.2% of the samples were free from Escherichia coli; 26.4% had >20 E. coli g super(-1) and 20.4% of the samples contained faecal streptococci >10 super(3) g super(-1). Seven percent of the samples showed coagulase positive staphylococci >100 g super(-1). Salmonella could not be detected in any of the samples examined. Crushed ice samples and the platform of the harbour had high bacterial loads.

Settlement characteristics of Crassostrea madrasensis in the Cochin backwaters

Settlement pattern of Crassostrea madrasensis (Preston) at five different habitats in and around Cochin Harbour is reported. The settlement pattern is found to be considerably influenced by the distribution of salinity at the various locations. Peak settlement occurred when salinity ranged between 22.4‰ to 33‰.

Height-depth (breadth) relationship of shells in the backwater oyster Crassostrea madrasensin (Preston) of the Cochin harbour

A study of the height-depth relation in the Indian backwater oyster Crassostrea madrasensis (Preston) was carried out. The plot of height against depth showed an exponential trend and a relationship of the form H = ADB. Plot of height against depth also showed larger deviations in height for oysters with greater depth. Analysis showed that variations in height do not result in corresponding variations in depth, particularly in oysters with increased height.

Some fungal infestations of dried fishes in Cochin markets

Dried fish constitutes a regular item of trade in India, particularly in the interior parts far away from the sea and rivers. The poor section of the society is the main consumer. The quality of dried fish never receives much attention at any stage of processing (drying) and storage. A good amount of these fish is discarded during drying due to fungal growth to avoid the danger of mycotoxin production. A survey of the dried fish from the Cochin markets had revealed that they do carry fungal infestations and their chances of mycotoxin production cannot be ruled out as the strains of Aspergillus flavus, Aspergillus ochraceus and Fusarium spp. have been isolated.

Height-length relation of shells in the Indian backwater oyster Crassostrea madrasensis (Preston) of the Cochin harbour

Height-length relationship in Crassostrea madrasensis (Preston) showed an exponential trend and relation in the form, H=ALᴮ. Deviations of actual values from the mean values consequent to the increase in size were noticed. Height and length approximated in oysters of less than 3.5cm in height resulting in orbicular shape. In oyster of shell height 3.5cm to 8cm, increase in height is faster leading to an oval shape. Above 8cm in height, the oysters become further elongated. Height-length relation is non-linear with an index (B value) of 1.1156. A linear relationship also holds good as the B value is not very much different from unity (H=-2.5424+2.0036L).

A quantitative study of Vibrio parahaemolyticus (Sakazaki et al) in Etroplus suratensis (Bloch) and Metapenaeus dobsoni (Miers) from Cochin backwater

Seasonal variation of Vibrio parahaemolyticus in fish (Etroplus sauratensis) and prawn (Metapenaeus dobsoni) was monitored from March 1982 to February 1983. Analyses of total viable count, vibrio-like organisms, V. parahaemolyticus like organisms and V. parahaemolyticus showed that they occur more in prawn than in fish. In a more polluted environment, the counts of V. parahaemolyticus associated with fish were found to be higher than in prawn.

Condition index and percentage edibility of Crassostrea madrasensis (Preston) inhabiting the Cochin Harbour

Monthly variations in condition index and percentage edibility of the population of oysters, namely, Crassostrea madrasensis (Preston) is reported for males, females and indeterminates for the period October 1981 to September 1982. Condition index and percentage edibility showed more or less similar trend for the total population and also for males, females and indeterminates. The condition index and percentage edibility were maximum during October 1981 which declined progressively and reached the lowest in February-March, 1982. From April it showed steady increase and reached the maximum again in October 1982 and this coincided with the gonadal cycle in oysters.

Hydrography of the Cochin harbour

The hydrography of the Cochin harbour is studied with reference to air temperature, dissolved oxygen, salinity and pH. The analysis of the data shows unique hydrographical characteristics which are influenced by the monsoon rains. The uniqueness lies mainly in the fluctuations of salinity which registers as low as 0.6‰ during monsoon period to near sea conditions (29.4‰) during the summer period. The dissolved oxygen, temperature and pH also showed fluctuations corresponding to seasons.

Ingression, abundance and settlement dynamics of Penaeid chrimp postlarvae in backwaters and adjacent tidal ponds in Cochin, India

Dynamics of penaeid postlarval ingression and settlement in the backwaters of Cochin were studied. Postlarval recruits were constituted by Metapenaeus dobsoni (70.8-78.4%), Penaeus indicus (17.5-24.6%), M. monoceros (3.8-4.6%) and P. monodon (0.3-0.4%). Their composition varied with location and season. Postlarval abundance and ingression were influenced by diel, tidal, lunar and seasonal factors. Ingression is mainly nocturnal in all species with nearly 84% of the activity during night hours. Abundance and ingression peaked up during high tides at night with major peaks coinciding with spring tides of full and new moon. It also followed a generalized seasonal pattern with two well-defined peaks for all species. It was pre-monsoon followed by post-monsoon for P. indicus and M. monoceros and post-monsoon followed by pre-monsoon for M. dobsoni. Sizes of the recruits were relatively small during pre-monsoon and post-monsoon and large during monsoon.

The genetic structure and phylogenetics of pikeperch (Sander lucioperca) Anzali and Amirkolaye wetlands and perch (Perca fluviatilis) populations in Aras Dam and south-west of the Caspian Sea

The genetic structure of pikeperch (Sander lucioperca) and perch (Perca fluviatilis) populations was studied using microsatellite technique. A total of 207 specimens of adult pikeperch were collected from Aras dam (57 specimens), Anzali wetland (50 specimens), Talesh (50 specimens) and Chaboksar (50 specimens) coasts. Also a total of 158 specimens of adult perch were collected from Anzali (Abkenar (50 specimens)and Hendekhale(48 specimens)) and Amirkolaye(60 specimens) wetlands. About 2 g of each specimen's dorsal fin was removed, stored in 96% ethyl alcohol and transferred to the genetic laboratory of the International Sturgeon Research Institute. Genomic DNA was extracted using ammonium-acetate method. The quality and quantity of DNA was assessed using 1% agarose gel electrophoresis. Polymerase Chain Reaction (PCR) was conducted on the target DNA using 15 pairs of microsatellite primers. PCR products were electrophoresed on poly acryl amide gels (6%) that were stained that were stained using silver nitrate. DNA bands were analyzed with BioCapt software. Allele count and frequency, genetic diversity, expected and observed heterozygosity , allele number and the effective allele number, genetic similarity and genetic distance, Fst, Rst, Hardy Weinberg Equilibrium based on X2 and Analysis of Molecular Variance (AMOVA) at 10% confidence level was calculated using the Gene Alex software. Dendogram for genetic distances and identities were calculated using TFPGA program for any level of hierarchy. The results for P. fluviatilis showed that from 15 pair of primers that were examined 6 polymorphic and 7 monomorphic loci were produced, while 2 loci didn't produce any DNA bands. Mean allele number was 4.1±1.1 and mean observed and expected heterozygosity was 0.56±0.12 and 0.58±0.14 respectively. It was also seen that specimens from all regions were not in Hardy Weinberg Equilibrium in some of loci (P<0.001). Highest Fst (0.095) with Nm=2.37 was observed between Hendekhale and Amirkolaye and the lowest Fst (0.004) with Nm=59.31 was observed between Abkenar and Hendekhale. According to AMOVA Significant difference (P<0.05) was observed between recorded Rst in the studied regions in Anzali and Amirkolaye lagoons. In another words there are two distinct populations of this species in Anzali and Amirkolaye lagoons. The highest genetic distance (0.181) and lowest genetic resemblance (0.834) were observed between specimens from Hendekhale and Amirkolaye and the lowest genetic distance (0.099) and highest genetic 176 resemblance (0.981) were observed between specimens from Abkenar and Hendekhale. Based on the genetic dendogram tree derived by applying UPGMA algorithm, specimens from Anzali and Amirkolaye wetlands have the same ancestor. On the other hand there is no noticeable genetic distance between the specimens of these two regions. Also the results for S. lucioperca showed that from 15 pair of primers that were examined 6 polymorphic and 7 monomorphic loci were produced, while 2 loci didn't produce any DNA bands. Mean allele number was 3.0±0.6 and mean observed and expected heterozygosity was 0.52±0.21 and 0.50±0.14 respectively. It was also seen that specimens from all regions were not in Hardy Weinberg Equilibrium in some of loci (P<0.001). Highest Fst (0.093) with Nm=2.43 was observed between Aras dam and Anzali wetland and the lowest Fst (0.022) with Nm=11.27 was observed between Talesh and Chaboksar coasts. Significant differences (P<0.05) were observed between recorded Rst in the studied regions exept for Talesh and Chaboksar Coasts. In another words there are three distinct populations of this species in Caspian sea, Anzali wetland and Aras dam. Highest genetic distance (0.110) and lowest genetic resemblance (0.896) were observed between specimens from Aras dam and Anzali wetland and the lowest genetic distance (0.034) and highest genetic resemblance (0.966) were observed between specimens from Talesh and Chaboksar coasts. Based on the genetic dendogram tree derived by applying UPGMA algorithm, specimens from Talesh and Chaboksar coasts have the lowest genetic distance. On the other hand the main population of this species belongs to Anzali wetland. Phylogenetic relationship of these two species was inferred using mitochondrial cytochrome b gene sequencing. For this purpose 2 specimens of P. fluviatilis from Anzali wetland, 2 specimens of S. lucioperca from Aras dam and 2 specimens of S. lucioperca from Anzali wetland were sequenced and submitted in Gene Bank. These sequences were aligned with Clustal W. The phylogenic relationships were assessed with Mega 4. The results of evolutionary history studies of these species using Neighbor-Joining and Maximum Parsimony methods showed that the evolutionary origin of pikeperch in Aras Dam and Anzali wetland is common. On the other hand these two species had common ancestor in about 4 million years ago. Also different sequences of any region specimens are supposed as different haplotypes. 177 As a conclusion the results of this study showed that microsatellite and mtDNA sequencing methods respectively are effective in genetic structure and phylogenic studies of P. fluviatilis and S. lucioperca.

A comparative ecological study on internationally important wetlands of Khoor-e-Kolahy and Tiab

Ecological study on Kolahy and 'flab estuaries were carried out during 1996-1997. Water and sediment sampling was done seasonally. In order to study the physical and chemical characteristic of the water, various animal fauna from different material niches including planktons and fish from water, benthousi from the sediment , and surface living animal such as Arthropod (Crabs) and Waterbirds were identified. I he result shoved, that water salinity of both estuaries was the same as the general salinity existing its the Persian Gulf water, and its variation is same IN those waters Minimum water salinity in both estuaries are seen during Bahairdan or early winter mooth(Jaa.), which is about 31ppt and Maximum is during .rirldlun.) or summer mouth at about 19 ppt. Dissolved otygen and pH are slime as the general Persian Gulf waters., Dissolve Oxygen being directly associated to temperature and its fluctuation is between 7- Sing/I and pH between 7.5-LS. The animals of both estuaries are almost similar having a sal factory species diversity . The birds of the region are often seasonal migrants , the maximum population of which occurs in winter season and the minimum during summer month. Nam coverage is richer in Tiab than Kolahy estuary, where in Kolahy a signal Mangrove tree is in exigence. 'Ile total coverage of Mangrove forest in Tiab is estimated about -29 hec.Both estuaries are included with in the international Ramsar Convention sites in 1971. Due to national importance of these estuaries inproviding refugee for various birds species and also hinting grounds and access traffic for local fishing vehicles, Actiog as an important access for various inhabitancy living with these area of the Persian Gulf. Due to importance or prawn aquacultur for the economical well being of local inhabitance, these areas provide a suitable grandees for prawn production. I-test statistics show, there are no significant difference among various invertebrate and vertebrate animals. In over all out look 21) phytoplankton genera, 21) zeoplankton genera 17 miafauna and 32 roaerofauna genera , 11 different species Carcineacearions and 119 species of walerbirds were identified with in the Tiab and Kolahy estuariesregioos. The X statistic show that the animal density is directly associated to season. Where density of miofauna and maerofauna in both estuaries are in maiticrourn during summer and the minimums existing during the winter season. In addition the bentic invertebrate population density in closlly association to birds population density since , the later, feeds on the former animals. Where the increasing in bird population density during the winter season, the bentic invertebrate animal population density decreases. The over all trend of animal population density in winter tend to increased towards the summer seasons, which this is due to climatic conditions of the region. The bird population on the contrary to other animals of both estuaries tend to increase from summer towards the winter seasons and which this bird population density is in maximum in winter with in the region.

Wetlands and riparian zones as buffers and critical habitats for biotic communities in Lake Victoria

Despite their ecological and socio-economic importance, Lake Victoria's adjoining "swamps" and lake interface are among the least investigated parts of the lake. The "swamps" a term commonly equated to "wastelands" and the difficult working environment they present in comparison to open water, are major factors for the low level of attention accorded to shoreline wetlands. Moreover, definitions of wetlands highlighted for example in the Ramsar Convention as "areas of marsh, fern, peatland or water, whether natural or artificial, permanent or temporary, with water that is static or flowing, fresh or brackish, or salt, including areas of marine water, the depth of which does not exceed six metres" (Ramsar, 1971) were designed to protect birds (water fowl) of international importance. The Ramsar definition, which also includes oceans, has till recently been of limited use for Lake Victoria, because itdoes not fully recognise wetlands in relation to other public concerns such as water quality, biodiversity and the tisheries that are of higher socioeconomic priority than waterfowl. Prior to 1992, fishery research on Lake Victoria included studies of inshore shallow habitats of the lake without specific reference to distance or the type of vegetation at the shore. Results of these studies also conveniently relied heavily on trawl and gill net data from the 5-10 m depth zones as the defining boundary of shallow inshore habitats. In Lake Victoria, such a depth range can be at least one kilometre from the lake interface and by the 10m depth contour, habitats are in the sub-littoral range. Findings from these studies could thus not be used to make direct inferences on the then assumed importance of Lake Victoria wetlands in general.