Complete mitochondrial genome of the Asian paddle crab Charybdis japonica (Crustacea: Decapoda: Portunidae): gene rearrangement of the marine brachyurans and phylogenetic considerations of the decapods

Given the commercial and ecological importance of the Asian paddle crab, Charybdis japonica, there is a clearly need for genetic and molecular research on this species. Here, we present the complete mitochondrial genome sequence of C. japonica, determined by the long-polymerase chain reaction and primer walking sequencing method. The entire genome is 15,738 bp in length, encoding a standard set of 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes, plus the putative control region, which is typical for metazoans. The total A+T content of the genome is 69.2%, lower than the other brachyuran crabs except for Callinectes sapidus. The gene order is identical to the published marine brachyurans and differs from the ancestral pancrustacean order by only the position of the tRNA (His) gene. Phylogenetic analyses using the concatenated nucleotide and amino acid sequences of 13 protein-coding genes strongly support the monophyly of Dendrobranchiata and Pleocyemata, which is consistent with the previous taxonomic classification. However, the systematic status of Charybdis within subfamily Thalamitinae of family Portunidae is not supported. C. japonica, as the first species of Charybdis with complete mitochondrial genome available, will provide important information on both genomics and molecular ecology of the group.

The complete mitochondrial genome of the mantid shrimp Oratosquilla oratoria (Crustacea: Malacostraca: Stomatopoda): Novel non-coding regions features and phylogenetic implications of the Stomatopoda

The complete mitochondrial (mt) genome sequence of Oratosquilla oratoria (Crustacea: Malacostraca: Stomatopoda) was determined; a circular molecule of 15,783 bp in length. The gene content and arrangement are consistent with the pancrustacean ground pattern. The mt control region of O. oratoria is characterized by no GA-block near the 3' end and different position of [TA(A)]n-blocks compared with other reported Stomatopoda species. The sequence of the second hairpin structure is relative conserved which suggests this region may be a synapomorphic character for the Stomatopoda. In addition, a relative large intergenic spacer (101 bp) with higher A + T content than that in control region was identified between the tRNA(Glu) and tRNA(Phe) genes. Phylogenetic analyses based on the current dataset of complete mt genomes strongly support the Stomatopoda is closely related to Euphausiacea. They in turn cluster with Penaeoidea and Caridea clades while other decapods form a separate group, which rejects the monophyly of Decapoda. This challenges the suitability of Stomatopoda as an outgroup of Decapoda in phylogenetic analyses. The basal position of Stomatopoda within Eumalacostraca according to the morphological characters is also questioned. (C) 2010 Elsevier Inc. All rights reserved.

The Yellow Sea cold bottom water - an oversummering site for Calanus sinicus (Copepoda, Crustacea)

The vertical distribution and stage-specific abundance of Calanus sinicus were investigated on three key transects in the southern Yellow Sea and the northern East China Sea in August 1999. The results showed that in summer C. sinicus shrank its distribution area to the central cold (less than or equal to10degreesC) bottom water in the Yellow Sea, i.e. the Yellow Sea Cold Bottom Water, remaining in high abundance (345.7 ind m(-3)). In the northern East China Sea on a transect from the mouth of the Yangtze River to the Okinawa trench, only a few individuals appeared in the inner side and none had been found either in the upper layer or in the deep layer of the outer shelf area. The population of C. sinicus in YSCBW consisted of mainly adults (46.83%) and C5 (37.41%). C1-C4 only accounted for 15.76%. The low proportion of the earlier copepodite stages and the high female:male ratio (11.39) indicated that the reproduction of C. sinicus in YSCBW was at a very low level due to the low temperature and low food concentration. It is concluded that the dramatic decrease of C. sinicus population in the shelf area of China seas in summer is caused by the shrinkage of its distribution area and the YSCBW served as an oversummering site.

Feeding habits of Calanus sinicus (Crustacea : Copepoda) during spring and autumn in the Bohai Sea studied with the herbivore index

Pigment ingestion rate (PIR) and egg production rate (EPR) of the dominant copepod Calanus sinicus, as well as chlorophyll-a concentration and phytoplankton assemblages were measured in the Bohai Sea, North China in June 1997, October 1998 and May 1999. A herbivore index (H) was also calculated as the carbon specific ratio of PIR and EPR, in order to investigate its feeding habits in the spring and autumn phytoplankton bloom respectively. On average, chlorophyll-a concentration was relatively similar (1-1.34 mg m(-3)) in the three cruises, but PIR was quite different. It was 3.24 mu g C female(-1) d(-1) in October, equivalent to one half of the PIR for June and one third of the PIR for May. Average EPR was highest in May, and quite similar during the other two months. According to H values, herbivorous feeding contributed 100% of the egg production of C. sinicus in June, 82.5% in May, but only 47.8% in October. It is possible that omnivorous feeding of C. sinicus in October was induced by a prevalence of large-sized diatoms and sufficient non-phytoplankton food resources during the autumn bloom period.

The Bopyridae (Crustacea: Isopoda) parasitic on thalassinideans (Crustacea: Decapoda) from China

Eight species among six genera of bopyrid isopods (representing the subfamilies Pseudionmae and loninae) infesting thalassinideans from China are reported. Of these, four species are new to science: Gyge.fujianensis n. sp., Progebiophilits elongatus n. sp., Upogebione bidigitatus n. sp., and Procepon liuruiyui n. sp., infesting Upogebia major (de Haan), Nihonotrypaea japonica Ortmann, Upogebia carinicauda (Stimpson), and Austinogebia wuhsienweni (Yu). One species, lone cornuta Bate, 1864, is recorded for the first time from Chinese waters and from a new host. Pseudione longicauda Shiino, 1937, Gyge ovalis (Shiino, 1939), and Progebiophilus sinicus Markham, 1982, previously known from Hong Kong or Taiwan, are recorded for the first time from mainland China, extending their range north.

First record of marine crab, Eucrate alcocki SerSne, in SerSne and Lohavanijaya, 1973 (Crustacea, Decapoda, Brachyura, Euryplacidae) from India

This paper reports the occurrence of a marine brachyuran crab species Eucrate alcocki SerSne, in SerSne et al., 1973, of the family Euryplacidae Stimpson, 1871, for first time from India, based on a male specimen from Parangipettai fish landing centre in Bay of Bengal, Southeast Coast of India. Although morphologically corresponding with what is currently defined as E. alcocki, the color pattern of the carapace of the present specimen is rather different from that of the Chinese material-only the anterior fifth of the carapace is marked with scattered red spots, the rest of the surface is yellowish, with four unusually shaped red blotches which almost look like Sanskrit characters.

Some palaemonid shrimps (Crustacea : Decapoda) from northern South China Sea, with descripitions of two new species

Thirty-four palaemonid species from the northern area of South China Sea are reported in the present paper, including two new species, Paranchistus lini, new species, and Periclimenes chacei, new species, and eight other species are reported for the first time from South China Sea: Leander tenuicornis (Say, 1818), Leandrites stenopus Holthuis, 1950, Palaemon debilis Dana, 1852, Urocaridella antonbrurnii (Bruce, 1967), Kemponia platycheles (Holthuis, 1952), Paraclimenes franklini (Bruce, 1990b), Paranchistus spondylis Suzuki, 1971, Periclimenes hirsutus Bruce, 1971.

The pontoniine shrimps (Crustacea : Decapoda : Palaemonidae) from Anambas and Natuna Islands, Indonesia, collected by Anambas Expedition, 2002

The present paper reports 8 pontoniine shrimp species, from Anambas and Natuna, Indonesia, i. e., Anchistus miersi (De Man, 1888), Conchodytes meleagrinae Peters, 1852, Hamodacotylus boschmai Holthuis, 1952, Jocaste japonica (Ortmann, 1890), Palaemonella pottsi (Borradaile, 1915), Periclimenes andamanensis Kemp, 1922, Periclimenes attenuatus Bruce, 1971, and Periclimenes grandis (Stimpson, 1860).

On the crangonidae (Crustacea : Decapoda : Caridea) of the Philippines from the PANGLAO 2004 and PANGLAO 2005 expeditions

Eleven species of the caridean family Crangonidae are reported from the material collected by the Philippine PANGLAO 2004 and PANGLAO 2005 expeditions. Although they have been reported from the Philippines before, all the species have their colouration described and illustrated here for the first time.

Report on some species of Palaemonidae (Crustacea, Decapoda) from French Polynesia

Based on material collected from French Polynesia and deposited in the Museum national d'Histoire naturelle, Paris, the present paper reports 31 palaemonid shrimp species, which belong to the Palaemoninae (two genera, three species) and to the Pontoniinae (12 genera, 28 species), including six new species. The new species are: Izucaris crosnieri n. sp., Periclimenes alexanderi n. sp., P. josephi n. sp., P platydactylus n. sp., P polynesiensis n. sp. and P vicinus n. sp. Detailed descriptions and illustrations of the new species are provided. Besides the six new species, ten other species are recorded for the first time from French Polynesia: Exoclimenella maldivensis Duris & Bruce, 1995, Kemponia rapanui (Fransen, 1987) n. comb., Palaemonella crosnieri Bruce, 1978, P spinulata Yokoya, 1936, Periclimenaeus hecate (Nobili, 1904), P orbitocarinatus Fransen, 2006, Periclimenes aleator Bruce, 199 1, P paralcocki Li & Bruce, 2006, P uniunguiculatus Bruce, 1990, Pontonides loloata Bruce, 2005.

FIRST RECORD OF THE GEBIIDEAN GENUS AXIANASSA SCHMITT, 1924 (CRUSTACEA: DECAPODA: GEBIIDEA: AXIANASSIDAE) IN THE WEST PACIFIC, WITH DESCRIPTION OF A NEW SPECIES FROM THE SOUTH CHINA SEA

A new species, Axianassa sinica, from the Beibu Gulf (Gulf of Tonkin), northern South China Sea, is described and illustrated. The new species is readily distinguished from A. australis Rodrigues & Shimizu, 1992, by its acute rostrum, merus of pereopod 1 with a tooth distally on lower margin and an elongated telson.

Additional pandaloid shrimps from the South China Sea (Crustacea : Decapoda : Caridea), with description of one new species

The present paper reports 22 pandaloid shrimp species from the South China Sea and its adjacent area, including two new records of the South China Sea, 14 new records of the Nanshan Islands, and one new speices. Heterocarpus chani, new species, type localities from the Philippines and Nansha Islands, is distinguished from its allied species, H. gibbosus Bate, 1888, H. tricarinatus Alcock & Anderson, 1894 and H. lepidus De Man, 1917, by the third maxilliped with a short rudimentary exopod.

Further Indo-West Pacific palaemonoid shrimps (Crustacea : Decapoda : Palaemonoidea), principally from the New Caledonian region

Based on the material deposited in the Museum national d'Histoire naturelle, Paris, collected from the Indo-West Pacific, principally from the New Caledonian region, the present paper reports 117 palaemonoid shrimp species, which belong, respectively, to Anchistioididae ( one genus, one species), Gnathophyllidae ( one genus, one species), Palaemonidae Palaemoninae ( seven genera, nine species), and Palaemonidae Pontoniinae ( 30 genera, 106 species), including eight new species. The new species are all Pontoniinae: Mesopontonia brevicarpalis sp. nov., Palaemonella komaii sp. nov., Periclimenes crosnieri sp. nov., Periclimenes forgesi sp. nov., Periclimenes loyautensis sp. nov., Periclimenes paralcocki sp. nov., Periclimenes paraleator sp. nov., and Periclimenes pseudalcocki sp. nov. The last six new species are members of the deep-water "Periclimenes alcocki species complex'', which has more than two ( usually four) pairs of dorsolateral telson spines anterior to the posterior telson margin, the cornea is usually reduced, the dactyl of the major second chela is generally flanged and the chela is sometimes covered with small tubercles. The complex is usually found at more than 200m depth in the West Pacific. The species can be distinguished from each other by the armature of ambulatory propod and dactyl, diameter of cornea, rostrum shape and the number of pairs of dorsolateral telson spines. Mesopontonia brevicarpalis sp. nov., from the southeast coast of Africa, is the seventh species of the genus. Palaemonella komaii sp. nov. is very similar to Palaemonella dolichodactylus Bruce, 1991 and Palaemonella hachijo Okuno, 1999. These three species share the features of very long and slender ambulatory pereiopods with the dactyl more than eight times longer than its basal depth and with several long setae on the dorsal dactylar margin.

Aega sheni, a new species of Aegidae (Crustacea : Isopoda : Cymothoida) from southern China and Australia

Aega sheni sp. nov. from Chinese and Australian waters, is described and figured. This species is characterized by the plate-like expansion of antennule peduncle articles 1 and 2, very large eyes (nearly making contact), numerous robust setae on the inferior margins of the ischium of pereopods 2 and 3, large distal lobe on the propodus of pereopods 1-3, shape and setation of the uropods, and the rounded pleotelson posterior margin. Aega sheni has been recorded at depths of 300-435 metres.