La génétique au service de la conservation d'une espèce menacée endémique à Madagascar : la tortue radiée Astrochelys radiata

Thèse numérisée par la Division de la gestion de documents et des archives de l'Université de Montréal

Natural parasitism of Diaphorina citri Kuwayama (Hemiptera, Psyllidae) nymphs by Tamarixia radiata Waterston (Hymenoptera, Eulophidae) in Sao Paulo orange groves

Natural parasitism of Diaphorina citri Kuwayama (Hemiptera, Psyllidae) nymphs by Tamarixia radiata Waterston (Hymenoptera, Eulophidae) in Sao Paulo orange groves. The psyllid Diaphorina citri Kuwayama 1908 has become the main citrus pest species in the state of Sao Paulo, Brazil, after the introduction of the huanglongbing or citrus greening. This study evaluated the parasitism of 3rd, 4th and 5th instar D. citri nymphs by Tamarixia radiata (Waterston, 1922) in citrus groves under a regimen of regular insecticide applications in ten producing regions: Araraquara, Barretos, Bauru, Botucatu, Franca, Itapetininga, Jau, Limeira, Lins and Sao Joao da Boa Vista. Sixty-nine samples of new branches infested with nymphs of D. citri were collected from 2005 to 2008 in orange groves ranging from 1 to 20 years old, of the varieties Hamlin, Pera, Valencia and Natal. The parasitoid T. radiata is widely distributed in Sao Paulo orange groves, and was identified in 50 (72%) of the samples, showing a mean parasitism rate of 12.4%. The highest parasitism rate was observed in the "summer" (from January through March), with a mean of 25.7%. Nymphal parasitism was above 90% in two samples. The probable causes of the variations in parasitism of D. citri by T. radiata are discussed.

Alkaline sulfite/anthraquinone pretreatment followed by disk refining of Pinus radiata and Pinus caribaea wood chips for biochemical ethanol production

BACKGROUND: Alkaline sulfite/anthraquinone (ASA) cooking of Pinus radiata and Pinus caribaea wood chips followed by disk refining was used as a pretreatment for the production of low lignified and high fibrillated pulps. The pulps produced with different delignification degrees and refined at different energy inputs (250, 750 and 1600 Wh) were saccharified with cellulases and fermented to ethanol with Saccharomyces cerevisiae using separated hydrolysis and fermentation (SHF) or semi-simultaneous saccharification and fermentation (SSSF) processes. RESULTS: Delignification of ASA pulps was between 25% and 50%, with low glucans losses. Pulp yield was from 70 to 78% for pulps of P. radiata and 60% for the pulp of P. caribaea. Pulps obtained after refining were evaluated in assays of enzymatic hydrolysis. Glucans-to-glucose conversion varied from 20 to 70%, depending on the degree of delignification and fibrillation of the pulps. The best ASA pulp of P. radiata was used in SHF and SSSF experiments of ethanol production. Such experiments produced maximum ethanol concentration of 20 g L-1, which represented roughly90% of glucose conversion and an estimated amount of 260 L ethanol ton(-1) wood. P. caribaea pulp also presented good performance in the enzymatic hydrolysis and fermentation but, due to the low amount of cellulose present, only 140 L ethanol would be obtained from each ton of wood. CONCLUSION: ASA cooking followed by disk refining was shown to be an efficient pretreatment process, which generated a low lignified and high-fibrillated substrate that allowed the production of ethanol from the softwoods with high conversion yields. (C) 2012 Society of Chemical Industry

Natural parasitism of Diaphorina citri Kuwayama (Hemiptera, Psyllidae) nymphs by Tamarixia radiata Waterston (Hymenoptera, Eulophidae) in São Paulo orange groves

The psyllid Diaphorina citri Kuwayama 1908 has become the main citrus pest species in the state of São Paulo, Brazil, after the introduction of the huanglongbing or citrus greening. This study evaluated the parasitism of 3rd, 4th and 5th instar D. citri nymphs by Tamarixia radiata (Waterston, 1922) in citrus groves under a regimen of regular insecticide applications in ten producing regions: Araraquara, Barretos, Bauru, Botucatu, Franca, Itapetininga, Jaú, Limeira, Lins and São João da Boa Vista. Sixty-nine samples of new branches infested with nymphs of D. citri were collected from 2005 to 2008 in orange groves ranging from 1 to 20 years old, of the varieties Hamlin, Pera, Valencia and Natal. The parasitoid T. radiata is widely distributed in São Paulo orange groves, and was identified in 50 (72%) of the samples, showing a mean parasitism rate of 12.4%. The highest parasitism rate was observed in the "summer" (from January through March), with a mean of 25.7%. Nymphal parasitism was above 90% in two samples. The probable causes of the variations in parasitism of D. citri by T. radiata are discussed.

Variaciones numéricas de Diaphorina citri Kuwayama (Sternorrhyncha: Psyllidae) y del Ectoparasitoide Tamarixia radiata (Waterston) (Hymenoptera: Eulophidae) en una plantación de naranjos de Entre Ríos, Argentina

Diaphorina citri es vector de la bacteria que produce la enfermedad HLB en cítricos, una de las más destructivas. En lotes comerciales de naranja dulce en Entre Ríos se analizó la abundancia espacio-temporal de adultos de D. citri y del ectoparasitoide Tamarixia radiata. Quincenalmente y durante tres años se colectaron adultos en 10 trampas cromotrópicas y los datos obtenidos fueron relacionados con el porcentaje medio de brotación de otra plantación. El número de D. citri/trampa/quincena se analizó mediante Kruskal-wallis y prueba de Mantel y la respuesta de agregación de T. radiata mediante correlación. Ambas poblaciones exhibieron la mayor abundancia el primer año: las frecuentes aplicaciones de abamectina en el segundo y tercero provocaron una marcada reducción. Espacialmente, la diferencia numérica de D. citri entre árboles no estuvo asociada a su cercanía pero la correlación entre ellos fue significativa. Temporalmente se evidenciaron cuatro picos de abundancia: tres asociados a brotación (invernal, primaveral y estival), y un cuarto no asociado a brotación. La mayor abundancia de T. radiata ocurrió en los árboles con mayor abundancia de D. citri y hubo una significativa correlación espacial entre ambas especies. El enrollamiento anti-horario del gráfico entre D. citri - T. radiata en árboles individuales sugiere una interacción huésped- parasitoide, estructurada como poblaciones locales.

Seawater carbonate chemistry and coverage and dry weight of Ecklonia radiata during experiments, 2010

Predictions about the ecological consequences of oceanic uptake of CO2 have been preoccupied with the effects of ocean acidification on calcifying organisms, particularly those critical to the formation of habitats (e.g. coral reefs) or their maintenance (e.g. grazing echinoderms). This focus overlooks the direct effects of CO2 on non-calcareous taxa, particularly those that play critical roles in ecosystem shifts. We used two experiments to investigate whether increased CO2 could exacerbate kelp loss by facilitating non-calcareous algae that, we hypothesized, (i) inhibit the recovery of kelp forests on an urbanized coast, and (ii) form more extensive covers and greater biomass under moderate future CO2 and associated temperature increases. Our experimental removal of turfs from a phase-shifted system (i.e. kelp- to turf-dominated) revealed that the number of kelp recruits increased, thereby indicating that turfs can inhibit kelp recruitment. Future CO2 and temperature interacted synergistically to have a positive effect on the abundance of algal turfs, whereby they had twice the biomass and occupied over four times more available space than under current conditions. We suggest that the current preoccupation with the negative effects of ocean acidification on marine calcifiers overlooks potentially profound effects of increasing CO2 and temperature on non-calcifying organisms.

Clasificación visual estructural de la madera de pino radiata procedente de Cataluña

Se han clasificado visualmente, según la norma española UNE 56544; 150 piezas de madera aserrada de pino radiata procedentes de Cataluña (España) con una sección de 80x150 mm y una longitud de 2.500 mm. Esta norma establece dos calidades visuales (ME-1 y ME-2) para piezas con grueso menor o igual que 70 mm y una única calidad visual (MEG) para gruesos mayores de 70 mm. Con el fin de conocer el efecto frontera entre la pequeña y la gran escuadría se clasificaron las piezas según ambas categorías. Se determinó la tensión de rotura en flexión, el módulo de elasticidad en flexión y la densidad de cada pieza mediante el ensayo de acuerdo con la norma UNE-EN 408 siguiendo los ajustes definidos en la norma UNE-EN 384. Un 53 % de las piezas se clasificaron como MEG con una resistencia característica a flexión de 28 N/mm2 y un valor medio del módulo de elasticidad de 9.900 N/mm2. Por otra, un 42 % de las piezas se clasificaron como ME-2 y sólo un 3 % como ME-1; en este caso las propiedades mecánicas de la calidad ME-2 no se alejan mucho de las de la calidad MEG. El elevado porcentaje de piezas rechazadas (47 % frente a la MEG) se debe principalmente al defecto de alabeo responsable de un 39 % de rechazo. Si no se considera el alabeo en la clasificación el porcentaje de rechazo desciende al 17 % y las propiedades mecánicas de la calidad MEG presentan un valor característico de resistencia a flexión de 21 N/mm2 y un módulo de elasticidad de 9.100 N/mm2. A sample of 150 pieces of radiata pine sawn timber with 180x120 mm in cross-section and 2.500 mm in length sourcing from Catalonia (Spain) were visually graded according to Spanish standard UNE 56544. This standard establish two visual grades (ME-1 and ME-2) for timber pieces with thickness equal or less than 70 mm, and one grade (MEG) for thickness bigger than 70 mm. In order to know the border effect between small and larger cross-section the pieces were graded in both categories. The modulus of rupture, modulus of elasticity and density were obtained by test according to EN 408 standard and the adjustments of EN 384. A 53 % of pieces were classified as MEG with a characteristic bending strength of 28 N/mm2 and a mean value of MOE of 9.900 N/mm2. On the other hand, a 42 % of pieces were classified as ME-2 and only a 3 % as ME-1; in this case the mechanical properties of ME-2 are not far from MEG properties. The high percentage of rejected pieces (47 % vs MEG) is mainly due to the twist defect with a 39 % of rejected pieces. If twist is not considered in the grading process the reject percentage decreases to 17 % and the mechanical properties of MEG grade present a characteristic value of bending strength of 21 N/mm2 and a MOE of 9.100 N/mm2.

Estudio sobre la influencia del contenido de humedad de la madera en ensayos no destructivos para Pinus nigra Arn, Pinus radiata D. Don y Pinus sylvestris L.

El presente proyecto se centra en el estudio de la influencia que ejerce el contenido de humedad en la madera sobre mediciones realizadas mediante diversos ensayos no destructivos (NDT – Non Destructive Tests-). El objetivo es encontrar la relación entre el contenido de humedad de la madera de varias especies del género Pinus (Pinus nigra Arn, Pinus radiata D.Don. y Pinus sylvestris Ait.) y los resultados de diferentes NDT (penetrómetro, resistencia al arranque de tornillos y velocidad de propagación de ondas inducidas y ultrasonidos), y en caso de existir, tratar de elaborar un modelo o factor de corrección que nos permita tener en cuenta dicha influencia en futuros NDT.

Situación del mercado de madera de calidad de pino radiata. Influencia en el estado de sus masas. Análisis de alternativas de gestión

Se estudia el estado actual de las masas españolas del pino radiata, y se compara con la situación en otros inventarios. También se analiza la evolución de los precios y las importaciones para tener una situación clara del mercado de esta madera y su posible evolución.

Efecto de la temperatura de termotratamiento en el comportamiento eléctrico de la madera de pino radiata

Se analiza el efecto de la temperatura del termotratamiento sobre la conductividad eléctrica de la madera de pino radiata. Sobre probetas de madera de pino radiata de procedencia País Vasco (España), termotratada a 190ºC y 210ºC por el método Thermowood así como sobre piezas testigo de la misma especie, procedencia y dimensiones, acondicionadas todas ellas hasta masa constante a 20ºC/40%HR, 20ºC/65%HR y 20ºC/90%HR se evaluó la resistencia eléctrica (longitudinal y transversal) y, posteriormente, se ajustó el modelo Samuelson para modelizar en cada tipo de material la relación humedad de la madera-resistencia eléctrica. Se concluye que la temperatura empleada en el tratamiento térmico de la madera afecta no sólo a la humedad de equilibrio sino, también, a su conductividad eléctrica, siendo máximo este efecto en el tratamiento efectuado a 210ºC.

NEEDLY, a Pinus radiata ortholog of FLORICAULA/LEAFY genes, expressed in both reproductive and vegetative meristems

The LEAFY/FLORICAULA genes from Arabidopsis and Antirrhinum are necessary for normal flower development and play a key role in diverse angiosperm species. A homologue of these flower meristem-identity genes, NEEDLY (NLY), has been identified in Pinus radiata. Although the NLY protein shares extensive sequence similarity with its angiosperm counterparts, it is lacking the proline-rich and acidic motifs thought to function as transcriptional activation domains. NLY already is expressed during vegetative development at least 5 years before the transition to the reproductive phase. Expression of NLY in transgenic Arabidopsis promotes floral fate, demonstrating that, despite its sequence divergence, NLY encodes a functional ortholog of the FLORICAULA/LEAFY genes of angiosperms. Expression of the LFY∷NLY transgene can largely complement the defects in flower development caused by a severe lfy allele.

Identification of a major locus conferring resistance to powdery mildew (Erysiphe polygoni DC) in mungbean (Vigna radiata L. Wilczek) by QTL analysis

A major locus conferring resistance to the causal organism of powdery mildew, Erysiphe polygoni DC,, in mungbean (Vigna radiata L. Wilczek) was identified using QTL analysis with a population of 147 recombinant inbred individuals. The population was derived from a cross between 'Berken', a highly susceptible variety, and ATF 3640, a highly resistant line. To test for response to powdery mildew, F-7 and F-8 lines were inoculated by dispersing decaying mungbean leaves with residual conidia of E. polygoni amongst the young plants to create an artificial epidemic and assayed in a glasshouse facility. To generate a linkage map, 322 RFLP clones were tested against the two parents and 51 of these were selected to screen the mapping population. The 51 probes generated 52 mapped loci, which were used to construct a linkage map spanning 350 cM of the mungbean genome over 10 linkage groups. Using these markers, a single locus was identified that explained up to a maximum of 86% of the total variation in the resistance response to the pathogen.

Segregation distortion for seed testa color in mungbean (Vigna radiata L. Wilcek)

Genetic segregation experiments with plant species are commonly used for understanding the inheritance of traits. A basic assumption in these experiments is that each gamete developed from megasporogenesis has an equal chance of fusing with a gamete developed from microsporogenesis, and every zygote formed has an equal chance of survival. If gametic and/or zygotic selection occurs whereby certain gametes or zygotic combinations have a reduced chance of survival, progeny distributions are skewed and are said to exhibit segregation distortion. In this study, inheritance data are presented for the trait seed testa color segregating in large populations (more than 200 individuals) derived from closely related mungbean (Vigna radiata L. Wilcek) taxa. Segregation ratios suggested complex inheritance, including dominant and recessive epistasis. However, this genetic model was rejected in favor of a single-gene model based on evidence of segregation distortion provided by molecular marker data. The segregation distortion occurred after each generation of self-pollination from F-1 thru F-7 resulting in F-7 phenotypic frequencies of 151:56 instead of the expected 103.5:103.5. This study highlights the value of molecular markers for understanding the inheritance of a simply inherited trait influenced by segregation distortion.

Construction of bacterial artificial chromosome libraries and their application in developing PCR-based markers closely linked to a major locus conditioning bruchid resistance in mungbean (Vigna radiata L. Wilczek)

Bacterial artificial chromosome (BAC) libraries have been widely used in different aspects of genome research. In this paper we report the construction of the first mungbean (Vigna radiata L. Wilczek) BAC libraries. These BAC clones were obtained from two ligations and represent an estimated 3.5 genome equivalents. This correlated well with the screening of nine random single-copy restriction fragment length polymorphism probes, which detected on average three BACs each. These mungbean clones were successfully used in the development of two PCR-based markers linked closely with a major locus conditioning bruchid (Callosobruchus chinesis) resistance. These markers will be invaluable in facilitating the introgression of bruchid resistance into breeding programmes as well as the further characterisation of the resistance locus.