Produção e sazonalidade de pessegueiro e nectarineira sob florescimento espontâneo e com cianamida hidrogenada e óleo mineral

O trabalho avaliou a produção e a sazonalidade de cultivares de pessegueiro e nectarineira, com e sem o uso de cianamida hidrogenada, em dois ciclos de produção (2009 e 2010). O experimento foi desenvolvido na Faculdade de Ciências Agronômicas, UNESP, Câmpus de Botucatu-SP, localizado nas seguintes coordenadas geográficas: latitude 22º51' 55" S, longitude 48º26' 22" O e 810 m de altitude. O tipo climático predominante é o temperado quente (mesotérmico), com chuvas no verão e seca no inverno. A aplicação de cianamida hidrogenada e óleo mineral resultou numa antecipação na data do início da colheita para todas as cultivares. Também houve uma concentração no período produtivo, diminuição no ciclo de produção e aumento na produção. A avaliação do ciclo da poda à colheita sob florescimento espontâneo evidenciou que as cultivares mais precoces foram: Precocinho (81,5 dias) e Conserva 693 (87 dias). As mais tardias foram: Turmalina (141,5 dias) e CP 951 C (134,5 dias). Com o uso da cianamida hidrogenada e do óleo mineral, o ciclo da poda à colheita permitiu a caracterização das cultivares mais precoces: Precocinho (87,5 dias) e a nectarineira Sun Blaze (95,5 dias). As mais tardios foram: Diamante Mejorado (126,5 dias) e CP 951 C (120 dias). As cultivares Turmalina (20,2 kg planta-1), Conserva 693 (20,75 kg planta-1) e Aurora 1 (15,65 kg planta-1) foram as mais produtivas .

A Database of >20 keV Electron Green's Functions of Interplanetary Transport at 1 AU

We use interplanetary transport simulations to compute a database of electron Green's functions, i.e., differential intensities resulting at the spacecraft position from an impulsive injection of energetic (>20 keV) electrons close to the Sun, for a large number of values of two standard interplanetary transport parameters: the scattering mean free path and the solar wind speed. The nominal energy channels of the ACE, STEREO, and Wind spacecraft have been used in the interplanetary transport simulations to conceive a unique tool for the study of near-relativistic electron events observed at 1 AU. In this paper, we quantify the characteristic times of the Green's functions (onset and peak time, rise and decay phase duration) as a function of the interplanetary transport conditions. We use the database to calculate the FWHM of the pitch-angle distributions at different times of the event and under different scattering conditions. This allows us to provide a first quantitative result that can be compared with observations, and to assess the validity of the frequently used term beam-like pitch-angle distribution.

Leaf nutritional levels in peach and nectarine grown in subtropical climate

The study evaluated the leaf nutritional levels of peach and nectarine trees under subtropical climate in order to improve the fertilization practices. The experiment was carried out in São Paulo state University, Botucatu, São Paulo State, Brazil. The experimental design consisted of subdivided plots, in which plots corresponded to cultivars and subplots to the leaf sample periods. The evaluated peach cultivars were: Marli, Turmalina, Precocinho, Jubileu, Cascata 968, Cascata 848, CP 951C, CP 9553CYN, and Tropic Beauty, and that of nectarine was 'Sun Blaze'. The sample periods were: after harvest, plants in vegetative period; dormancy; beginning of flowering and fruiting (standard sample). Results indicated significant variations in the levels of N, P, K, Ca, Mg, S, B, Cu, Fe, Mn and Zn for the sampling period and in N, Ca, Mg, S, B, Fe and Mn levels for the cultivars.

The rare cancer network: ongoing studies and future strategy.

The Rare Cancer Network (RCN) was formed in the early 1990's to create a global network that could pool knowledge and resources in the studies of rare malignancies whose infrequency prevented both their study with prospective clinical trials. To date, the RCN has initiated 74 studies resulting in 46 peer reviewed publications. The First International Symposium of the Rare Cancer Network took place in Nice in March of 2014. Status updates and proposals for new studies were heard for fifteen topics. Ongoing studies continue for cardiac sarcomas, thyroid cancers, glomus tumors, and adult medulloblastomas. New proposals were presented at the symposium for primary hepatic lymphoma, solitary fibrous tumors, Rosai-Dorfman disease, tumors of the ampulla of Vater, salivary gland tumors, anorectal melanoma, midline nuclear protein in testes carcinoma, pulmonary lymphoepithelioma-like carcinoma, adenoid cystic carcinoma of the trachea, osteosarcomas of the mandible, and extra-cranial hemangiopericytoma. This manuscript presents the abstracts of those proposals and updates on ongoing studies, as well a brief summary of the vision and future of the RCN.

Avoin lähdekoodi ohjelmistotalojen näkökulmasta

Tässä diplomityössä tarkastellaan avoimen lähdekoodin hyödyntämistä ohjelmistotalojen kolmen asiantuntijaryhmän näkökulmasta: teknologian edustajien, liiketoiminnan johdon ja lakimiesten. Työssä käydään läpi avoimen lähdekoodin historiaa ja OSI:n avoimen lähdekoodin määritelmä. Työssä esitellään myös neljä yleistä avoimen lähdekoodin lisenssiä: GPL, LGPL, BSD ja MPL. Tekninen näkökulma näkyy, kun työssä käydään läpi avoimen lähdekoodin vahvuudet ja heikkoudet. Suurin osa avoimen lähdekoodin tuotteista ei ole vielä tarpeeksi kehittyneitä kaupalliseen käyttöön, mutta joukosta löytyy myös muutama todellinen vaihtoehto. Työssä esitellään viisi tunnettua lähdekoodin tuotetta: Linux, Apache, MySQL, Perl ja PHP. Avoimen lähdekoodin mahdollistamat ansaintamallit tuovat esiin liiketoiminnan johdon kiinnostuksen kohteen. Työssä esitellään viisi yritystä, jotka ovat onnistuneet hyödyntämään näitä liiketoiminnan malleja: Red Hat, VA Software, JBoss, IBM ja Sun Microsystems. Juridisesta näkökulmasta suurin riski avoimen lähdekoodin tuotteiden käytössä on kolmansien osapuolien immateriaalioikeuksien loukkaaminen. Lähes kaikki avoimen lähdekoodin ohjelmistot on lisensoitu siten, etteivät ne anna minkäänlaista takuuta tai ota vastuuta. Työssä käsitellään myös sitä, kuinka avoimen lähdekoodin aiheuttamia riskejä vastaan voidaan suojautua. Työn tuloksena syntyy päätösprosessi, jota voidaan käyttää apuna tehdessä lopullista päätöstä avoimen lähdekoodin ohjelmiston käytöstä.

Activating mutations of STAT5B and STAT3 in lymphomas derived from γδ-T or NK cells.

Lymphomas arising from NK or γδ-T cells are very aggressive diseases and little is known regarding their pathogenesis. Here we report frequent activating mutations of STAT3 and STAT5B in NK/T-cell lymphomas (n=51), γδ-T-cell lymphomas (n=43) and their cell lines (n=9) through next generation and/or Sanger sequencing. STAT5B N642H is particularly frequent in all forms of γδ-T-cell lymphomas. STAT3 and STAT5B mutations are associated with increased phosphorylated protein and a growth advantage to transduced cell lines or normal NK cells. Growth-promoting activity of the mutants can be partially inhibited by a JAK1/2 inhibitor. Molecular modelling and surface plasmon resonance measurements of the N642H mutant indicate a marked increase in binding affinity of the phosphotyrosine-Y699 with the mutant histidine. This is associated with the prolonged persistence of the mutant phosphoSTAT5B and marked increase of binding to target sites. Our findings suggest that JAK-STAT pathway inhibition may represent a therapeutic strategy.

Lentoaseman terminaalirakennuksen energiankäyttö ja sisäilmasto

Diplomityössä tarkasteltiin lentoaseman terminaalirakennuksen energia- ja ainevirtoja sekä sisäilman ominaisuuksia. Esimerkkikohteena oli Helsinki-Vantaan lentoaseman keskiterminaalirakennus, jonka 1. ja 2. rakennusvaiheen ulkovaippa muodosti taserajan. Taseen ulkopuolisista tekijöistä tarkasteltiin jäähdytysenergian tuotantoa ja ulkoilman laatua. Työn yhtenä tavoitteena oli muodostaa rakennukselle energiatase. Taseen avulla saatiin tietoa energian jakautumisesta eri toimintoihin ja löydettiin tekijät, joita suunnittelussa tulee painottaa. Terminaalin lähiympäristössä tutkittiin ulkoilman laatua mittausten avulla. Mittaustietoja käytetään apuna tulevaisuuden ilmanottosuunnittelussa. Työssä tarkasteltiin energia- ja ainevirtoina lämpö-, jäähdytys- ja sähköenergian sekä veden ostoa, tuotantoa ja kulutusta sekä prosessointia. Terminaalin lämpötarpeesta hieman yli puolet katettiin kaukolämmöllä. Loput noin 45 % lämpöenergiasta saatiin ns. ilmaisenergioista. Näistä merkittävimmäksi havaittiin sähkölaitteiden luovuttama lämpömäärä. Lämpöhäviöiden kannalta merkittäviä energiavirtoja olivat ilmanvaihdon ja vuotoilmojen kautta siirtyvät energiavirrat, joiden osuuden todettiin olevan noin 80 % terminaalin kokonaislämpöhäviöistä. Vaipan lämmöneristyskyky ja kyky absorboida auringon säteilyä todettiin hyviksi. Tulevaisuudessa tärkeitä suunnittelunäkökohtia tulevat olemaan ilmanvaihdon ja vuotoilman kautta siirtyvien energiavirtojen hallinta sekä sähköenergian ominaiskulutuksen pienentäminen. Ulkoilma todettiin mittauksin hyvätasoiseksi. Lento- ja maaliikenteen päästöarvot olivat lähellä toisiaan ja selvästi ohjearvoja alemmalla tasolla. Päästöjen sijaintiin vaikuttivat liikennemääriä enemmän tuuliolosuhteet. Tulevaisuudessa tuloilma voidaan johtaa terminaaliin yhtä hyvin joko lento- tai maaliikenteen puolelta.

Ohjelmistoarkkitehtuurien vertailu ja valinta monimediatuotteelle. CASE: AVO

Työn tavoitteena oli tutkia ja vertailla komponenttipohjaisia ohjelmistoarkkitehtuureita (Microsoft .NET ja J2EE). Työn tarkoituksena oli valita ohjelmistoarkkitehtuuri uudelle neuroverkkopohjaiselle urasuunnittelupalvelulle. Tässä työssä selvitettiin myös, miten luodaan kansainvälistettäviä ja lokalisoitavia sovelluksia, sekä kuinka Web-, Windows-, mobiili-, puhe- ja Digi-TV -käyttöliittymät soveltuvat uudelle urasuunnittelupalvelulle. Tutkimustyössä käytettiin alan kirjallisuutta, Microsoftin ja Sun Microsystemsin Web-sivuja. Tutkimustyössä analysoitiin Microsoft Pet Shop- ja Sun Microsystemsin Java Pet Store -esimerkkisovellusten suorituskykyvertailua. Analyysituloksiin perustuen urasuunnittelupalvelussa suositellaan käytettäväksi J2EE-arkkitehtuuria. Uudelle urasuunnittelupalvelulle toimenpide-ehdotus on komponenttipohjainen järjestelmä Web-, puhe- ja Digi-TV -käyttöliittymillä ja personoidulla sisällöllä. Järjestelmä tehdään viisivaiheisena hankkeena, johon sisältyy pilottitestejä. Uuteen urasuunnittelupalveluun liitetään mukaan opiskelijat, oppilaitokset ja työnantajat sekä asiantuntijoita neuroverkon opetusdatan määrittämiseen. Palvelu perustuu integroituun tietokantaan. Eri osajärjestelmissä tuotettua tietoa voidaan hyödyntää kaikkialla urasuunnittelupalvelussa.

Completion and Publication Rates of Randomized Controlled Trials in Surgery: An Empirical Study.

OBJECTIVE: To investigate the prevalence of discontinuation and nonpublication of surgical versus medical randomized controlled trials (RCTs) and to explore risk factors for discontinuation and nonpublication of surgical RCTs. BACKGROUND: Trial discontinuation has significant scientific, ethical, and economic implications. To date, the prevalence of discontinuation of surgical RCTs is unknown. METHODS: All RCT protocols approved between 2000 and 2003 by 6 ethics committees in Canada, Germany, and Switzerland were screened. Baseline characteristics were collected and, if published, full reports retrieved. Risk factors for early discontinuation for slow recruitment and nonpublication were explored using multivariable logistic regression analyses. RESULTS: In total, 863 RCT protocols involving adult patients were identified, 127 in surgery (15%) and 736 in medicine (85%). Surgical trials were discontinued for any reason more often than medical trials [43% vs 27%, risk difference 16% (95% confidence interval [CI]: 5%-26%); P = 0.001] and more often discontinued for slow recruitment [18% vs 11%, risk difference 8% (95% CI: 0.1%-16%); P = 0.020]. The percentage of trials not published as full journal article was similar in surgical and medical trials (44% vs 40%, risk difference 4% (95% CI: -5% to 14%); P = 0.373). Discontinuation of surgical trials was a strong risk factor for nonpublication (odds ratio = 4.18, 95% CI: 1.45-12.06; P = 0.008). CONCLUSIONS: Discontinuation and nonpublication rates were substantial in surgical RCTs and trial discontinuation was strongly associated with nonpublication. These findings need to be taken into account when interpreting surgical literature. Surgical trialists should consider feasibility studies before embarking on full-scale trials.

Gene filtering with optimal threshold selection

Gene filtering is a useful preprocessing technique often applied to microarray datasets. However, it is no common practice because clear guidelines are lacking and it bears the risk of excluding some potentially relevant genes. In this work, we propose to model microarray data as a mixture of two Gaussian distributions that will allow us to obtain an optimal filter threshold in terms of the gene expression level.

Discovery of a High-Energy Gamma-Ray-Emitting Persistent Microquasar

Microquasars are stellar x-ray binaries that behave as a scaled down version of extragalactic quasars. The star LS 5039 is a new microquasar system with apparent persistent ejection of relativistic plasma at a 3 kiloparsec distance from the sun. It may also be associated with a gamma-ray source discovered by the Energetic Gamma Ray Experiment Telescope (EGRET) on board the COMPTON-Gamma Ray Observatory satellite. Before the discovery of LS 5039, merely a handful of microquasars had been identified in the Galaxy, and none of them was detected in high-energy gamma-rays.

Current Sheet Regulation of Solar Near-relativistic Electron Injection Histories

We present a sample of three large near-relativistic (>50 keV) electron events observed in 2001 by both the ACE and the Ulysses spacecraft, when Ulysses was at high-northern latitudes (>60◦) and close to 2 AU. Despite the large latitudinal distance between the two spacecraft, electrons injected near the Sun reached both heliospheric locations. All three events were associated with large solar flares, strong decametric type II radio bursts and accompanied by wide (>212◦) and fast (>1400 km s−1) coronal mass ejections (CMEs). We use advanced interplanetary transport simulations and make use of the directional intensities observed in situ by the spacecraft to infer the electron injection profile close to the Sun and the interplanetary transport conditions at both low and high latitudes. For the three selected events, we find similar interplanetary transport conditions at different heliolatitudes for a given event, with values of the mean free path ranging from 0.04 AU to 0.27 AU. We find differences in the injection profiles inferred for each spacecraft. We investigate the role that sector boundaries of the heliospheric current sheet (HCS) have on determining the characteristics of the electron injection profiles. Extended injection profiles, associated with coronal shocks, are found if the magnetic footpoints of the spacecraft lay in the same magnetic sector as the associated flare, while intermittent sparse injection episodes appear when the spacecraft footpoints are in the opposite sector or a wrap in the HCS bounded the CME structure.

Oxidized oils and dietary zinc and alpha-tocopheryl acetate supplementation: effects on rabbit plasma, liver and meat fatty acid composition and meat Zn, Cu, Fe and Se content

The effects of the addition of heated oils to feeds (3%, w/w) and the dietary supplementation with a-tocopheryl acetate (TA; 100 mg/kg) and Zn (200 mg/kg) on rabbit tissue fatty acid (FA) composition and on the Zn, Cu, Fe and Se content in meat were assessed. Heating unrefined sunflower oil (SO) at 558C for 245 h increased its content in primary oxidation products and reduced its a-tocopherol content. However, this did not significantly affect tissue FA composition. Heating SO at 1408C for 31 h increased its content in secondary oxidation products and in some FA isomers asc9,t11-CLA and di-trans CLA. This led to increases in di-trans CLA in liver and in t9,c12-18:2 in meat. The c9,t11-CLA was the most incorporated CLA isomer in tissues. The dietary supplementation with a-TA did not affect the FA composition of plasma, liver or meat. The cooking of vacuum-packed rabbit meat at 788C for 5 min reduced significantly but slightly its polyunsaturated FA content. The dietary supplementation with Zn did not modify the content of Zn, Fe or Se in meat, but it reduced its Cu content. On the other hand, it increased the content of some FAs in meat when SO heated at 1408C for 31 h was added to feeds.

Multi-institutional validation of the prognostic value of Ki-67 labeling index in patients treated with radical prostatectomy.

OBJECTIVE: Several smaller single-center studies have reported a prognostic role for Ki-67 labeling index in prostate cancer. Our aim was to test whether Ki-67 is an independent prognostic marker of biochemical recurrence (BCR) in a large international cohort of patients treated with radical prostatectomy (RP). METHODS: Ki-67 immunohistochemical staining on prostatectomy specimens from 3,123 patients who underwent RP for prostate cancer was retrospectively performed. Univariable and multivariable Cox regression models were used to assess the association of Ki-67 status with BCR. RESULTS: Ki-67 positive status was observed in 762 (24.4 %) patients and was associated with lymph node involvement (LNI) (p = 0.039). Six hundred and twenty-one (19.9 %) patients experienced BCR. The estimated 3-year biochemical-free survivals were 85 % for patients with negative Ki-67 status and 82.1 % for patients with positive Ki-67 status (log-rank test, p = 0.014). In multivariable analysis that adjusted for the effects of age, preoperative PSA, RP Gleason sum, seminal vesicle invasion, extracapsular extension, positive surgical margins, lymphovascular invasion, and LNI, Ki-67 was significantly associated with BCR (HR = 1.19; p = 0.019). Subgroup analysis revealed that Ki-67 is associated with BCR in patients without LNI (p = 0.004), those with RP Gleason sum 7 (p = 0.015), and those with negative surgical margins (p = 0.047). CONCLUSION: We confirmed Ki-67 as an independent predictor of BCR after RP. Ki-67 could be particularly informative in patients with favorable pathologic characteristics to help in the clinical decision-making regarding adjuvant therapy and optimized follow-up scheduling.