Effect of pH on Candida tropicalis virulence factors

Dissertação de mestrado em Bioengenharia

The effects of sodium hypochlorite against selected drinking water-isolated bacteria in planktonic and sessile states

Chlorine is the most commonly used agent for general disinfection, particularly for microbial growth control in drinking water distribution systems. The goals of this study were to understand the effects of chlorine, as sodium hypochlorite (NaOCl), on bacterial membrane physicochemical properties (surface charge, surface tension and hydrophobicity) and on motility of two emerging pathogens isolated from drinking water, Acinetobacter calcoaceticus and Stenotrophomonas maltophilia. The effects of NaOCl on the control of single and dual-species monolayer adhered bacteria (2 h incubation) and biofilms (24 h incubation) was also assessed. NaOCl caused significant changes on the surface hydrophobicity and motility of A. calcoaceticus, but not of S. maltophilia. Planktonic and sessile S. maltophilia were significantly more resistant to NaOCl than A. calcoaceticus. Monolayer adhered co-cultures of A. calcoaceticus-S. maltophilia were more resilient than the single species. Oppositely, dual species biofilms were more susceptible to NaOCl than their single species counterparts. In general, biofilm removal and killing demonstrated to be distinct phenomena: total bacterial viability reduction was achieved even if NaOCl at the higher concentrations had a reduced removal efficacy, allowing biofilm reseed. In conclusion, understanding the antimicrobial susceptibility of microorganisms to NaOCl can contribute to the design of effective biofilm control strategies targeting key microorganisms, such as S. maltophilia, and guarantying safe and high-quality drinking water. Moreover, the results reinforce that biofilms should be regarded as chronic contaminants of drinking water distribution systems and accurate methods are needed to quantify their presence as well as strategies complementary/alternative to NaOCl are required to effectively control the microbiological quality of drinking water.

Synthetic biology approaches to shape bacteriophages towards Pseudomonas aeruginosa biofilm control

Dissertation for Ph.D. degree in Biomedical Engineering.

Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC

Alicycliphilus denitrificans strain BC grows anaerobically on acetone with nitrate as electron acceptor. Comparative proteomics of cultures of A. denitrificans strain BC grown on either acetone or acetate with nitrate was performed to study the enzymes involved in the acetone degradation pathway. In the proposed acetone degradation pathway, an acetone carboxylase converts acetone to acetoacetate, an AMP-dependent synthetase/ligase converts acetoacetate to acetoacetyl-CoA, and an acetyl-CoA acetyltransferase cleaves acetoacetyl-CoA to two acetyl-CoA. We also found a putative aldehyde dehydrogenase associated with acetone degradation. This enzyme functioned as a -hydroxybutyrate dehydrogenase catalyzing the conversion of surplus acetoacetate to -hydroxybutyrate that may be converted to the energy and carbon storage compound, poly--hydroxybutyrate. Accordingly, we confirmed the formation of poly-?-hydroxybutyrate in acetone-grown cells of strain BC. Our findings provide insight in nitrate-dependent acetone degradation that is activated by carboxylation of acetone. This will aid studies of similar pathways found in other microorganisms degrading acetone with nitrate or sulfate as electron acceptor.

Evaluation of antimicrobial strategies against biomaterial-associated infections: impact of the surrounding environmental conditions

Dissertação de mestrado em Bioengenharia

Influence of skeletal muscle mass on ventilatory and hemodynamic variables during exercise in patients with chronic heart failure

OBJECTIVE: To assess the influence of skeletal muscle mass on ventilatory and hemodynamic variables during exercise in patients with chronic heart failure (CHF). METHODS: Twenty-five male patients underwent maximum cardiopulmonary exercise testing on a treadmill with a ramp protocol and measurement of the skeletal muscle mass of their thighs by using magnetic resonance imaging. The clinically stable, noncachectic patients were assessed and compared with 14 healthy individuals (S) paired by age and body mass index, who underwent the same examinations. RESULTS: Similar values of skeletal muscle mass were found in both groups (CHF group: 3863 ± 874 g; S group: 3743 ± 540 g; p = 0.32). Significant correlations of oxygen consumption in the anaerobic threshold (CHF: r = 0.39; P= 0.02 and S: r = 0.14; P = 0.31) and of oxygen pulse also in the anaerobic threshold (CHF: r = 0.49; P = 0.01 and S: r =0.12; P = 0.36) were found only in the group of patients with chronic heart failure. CONCLUSION: The results obtained indicate that skeletal muscle mass may influence the capacity of patients with CHF to withstand submaximal effort, due to limitations in their physical condition, even maintaining a value similar to that of healthy individuals. This suggests qualitative changes in the musculature.

Factores de virulencia involucrados en el Síndrome Urémico Hemolítico y desarrollo de estrategias terapéuticas. Factors of virulence involved in the Hemolytic Uremic Syndrome and development of therapeutic strategies.

La alta incidencia del Síndrome Urémico Hemolítico(SUH) en Argentina conjuntamente con la severidad de esta patología en niños, han motivado la investigación de numerosos grupos. Si bien se ha reconocido la participación de apoptósis a nivel renal y de leucocitos, aun no se ha profundizado el posible rol del estrés oxidativo en el daño a estas células y otras que son afectadas durante esta patología, ni la relación con el estímulo de especies reactivas del oxígeno(ERO) y del nitrógeno (ERN). Hipótesis: El daño sufrido por el organismo durante el SUH se debe a más de un factor de virulencia incluyendo la Shiga toxina (Stx) o Vero toxina (VT), los que en conjunto causan injuria oxidativa principalmente en células sanguíneas y renales; siendo más sensibles al estrés los niños con falencias en las defensas antioxidantes, que serían los que derivan a fallas renales severas. Es posible que un tratamiento protector antiestrés oxidativo después de la detección del SUH prevenga el curso hacia el daño renal crónico y otras graves secuelas de éste síndrome. Obj.general: Efectuar aportes al conocimiento y tratamiento del SUH, investigando el mecanismo de acción de los principales factores de virulencia de E.coli Entero Hemorrágica (EHEC), planteando estrategias terapéuticas futuras para contrarrestar el estrés oxidativo que pudiese estar involucrado. Obj.específicos: Investigar si la Stx y/o la hemolisina (Hly) de E.coli estimulan la producción de ERO y ERN en células del huésped, causando oxidación de proteínas y lípidos. Estudiar si la respuesta de los eritrocitos ante injurias oxidativas se podría utilizar como parámetro para detectar mayor susceptibilidad a Stx y Hly. Investigar si las defensas antioxidantes intracelulares y plasmáticas se incrementan con secuestrantes de radicales y antioxidantes naturales; estabilizando el potencial de membrana e impidiendo el incremento de biomarcadores de estrés oxidativo. Esclarecer aspectos que involucran al estrés oxidativo en la acción de antibióticos sobre células sanguíneas, líneas celulares y E.coli en estado planctónico o en biofilms, investigando qué antimicrobianos aumentan la liberación de Stx y Hly. Estudiar sustancias antioxidantes naturales y alimentos que puedan ser aplicados en terapia y prevención del SUH. Mat.y Met.: Se trabajará con cepas de bacterias que fueron obtenidas de pacientes con SUH. Stx y Hly serán purificadas por cromatografía afinidad y de intercambio iónico, respectivamente. Ensayos de quimioluminiscencia serán aplicados para determinar el estímulo de ERO, mientras que ERN se cuantificarán por Griess. Los niveles de marcadores de daño oxidativo se estudiarán para oxidación de lípidos, proteínas y otros productos avanzados de oxidación proteica. Rdos esperados: Se espera encontrar acción estresante de Stx y/o Hly sobre eritrocitos y otras células, así como biomarcadores de oxidación en diferentes macromoléculas sanguíneas. Es probable que exista diferente nivel de defensa contra esta injuria en niños con SUH; de ser así estos pacientes son susceptibles de recaídas y cronicidad en el proceso por falta de niveles adecuados de antioxidantes. Es necesario entonces encontrar terapias a largo plazo que aumenten las defensas contra el estrés oxidativo causado por E.coli u otras noxas con que se enfrente el niño predispuesto. Se cuenta con antecedentes en el laboratorio que indican conveniente una dieta rica en antioxidantes, así como otros probables fármacos en estudio. Importancia del proyecto. Este proyecto permitirá continuar con investigaciones propias que muestran acción estresante de ERO en eritrocitos por parte de cepas causantes de SUH. La continuidad de estos estudios puede representar un avance en la terapia de una patología cada vez más frecuente en Argentina. Los avances que se consigan podrían posibilitar un tratamiento preventivo en niños en general, así como una mejor evolución de los casos que derivan actualmente en diálisis.

Estudio de los mecanismos inmunosupresores involucrados en la cronicidad de la infección intramamaria por staphylococcus aureus en bovinos. Immunosuppressive mechanisms involved in intrammary chronic infection by staphylococcus aureus in bovine.

La producción de productos lácteos conforma un complejo productivo de larga trayectoria en Argentina, con grandes transformaciones en el sector lechero en los últimos años. La provincia de Córdoba es una de las principales áreas de producción lechera, participando del 34.5 por ciento de la producción nacional. Esta provincia cuenta con un alto número de industrias, principalmente localizadas en la cuenca de Villa María, y concentra el 35 por ciento de los establecimientos lecheros del país. La Mastitis bovina (MB) es la principal causa de pérdidas económicas para el productor y la industria láctea a nivel mundial y regional, por lo cual se plantea la necesidad de mejorar la calidad higiénica y sanitaria de la leche a través de un mayor control de la mastitis. La MB es una inflamación de la glándula mamaria (GM) asociada a una infección bacteriana. Es la enfermedad más común y de mayor incidencia en el ganado lechero, siendo la principal causa de pérdidas económicas para la industria láctea a nivel mundial. Las medidas actuales de control de MB están basadas en prácticas de higiene apropiadas, reducción de la exposición ambiental al patógeno y terapia antibiótica del ganado, las cuales no son totalmente efectivas en el control de la infección. La defensa de la GM contra los patógenos causantes de MB depende de factores anatómicos, celulares y solubles, siendo la eficiencia de esos mecanismos la que determina la resistencia a nuevas infecciones. Los mediadores inmunes innatos y adquiridos de los tejidos y secreciones de la GM actúan en forma coordinada en la protección de la glándula contra enfermedades contagiosas. Staphylococcus aureus es el agente etiológico más importante en la mastitis. Esta bacteria evade la respuesta inmune inflamatoria mediante la inducción de mecanismos inmunosupresores, llevando a la patología a un curso crónico. S. aureus además puede colonizar el tejido epitelial y formar películas bacterianas conocidas como biofilms. Así, S. aureus adquiere más resistencia a la terapia antibiótica y a la acción del sistema inmunológico determinando la persistencia de la enfermedad. Nuestra hipótesis es que una respuesta inmune desarrollada en un microambiente particular de citoquinas, quimioquinas y células, podría contribuir a la evasión del patógeno y al desarrollo de una infección crónica. El polisacárido Quitosano (Q) presenta un efecto antibacteriano e inmunoestimulante en cultivos de células inmunes de ganado bovino, un efecto protectivo en modelos murinos de mastitis y actividad anti-biofilms de distintas cepas bacterianas. Por sus propiedades intrínsecas, este polisacárido es un candidato ideal en la regulación de las respuestas inmunológicas. El objetivo de este proyecto es caracterizar el microambiente local y sistémico, las señales inducidas por el microorganismo que promueven una falla inmunológica y caracterizar el efecto de Q sobre las respuestas generadas en la GM, mediante la realización de numerosos estudios in vivo e in vitro. Las estrategias para controlar la MB por S. aureus y disminuir el impacto de esta patología en la industria láctea, podrían orientarse a la manipulación del sistema inmunológico de la GM bovina a fin de incrementar los mecanismos de defensa naturales del huésped. Los resultados que se desprendan del proyecto permitirán adquirir conocimiento para el desarrollo de nuevas estrategias de inmunointervención a fin de controlar la MB por S. aureus y disminuir el impacto de esta patología en la industria láctea. Siendo la MB una patología relevante no solo en lo que hace a status sanitario animal, línea prioritaria definida en el Plan Estratégico Nacional de Ciencia, Tecnología e Innovación "Bicentenario 2006-2010", sino también a las implicancias económicas de esta problemática, y dado el desarrollo de la actividad lechera en la región y en el país, los resultados obtenidos podrían tener un importante impacto socioeconómico.

A review of the development of regional sludge treatment centres and a baseline characterisation of Irish sewage sludges

This Study assessed the development of sludge treatment and reuse policy since the original 1993 National Sludge Strategy Report (Weston-FTA, 1993). A review of the 48 sludge treatment centres, current wastewater treatment systems and current or planned sludge treatment and reuse systems was carried out Sludges from all Regional Sludge Treatment Centres (areas) were characterised through analysis of selected parameters. There have been many changes to the original policy, as a result of boundary reviews, delays in developing sludge management plans, development in technology and changes in tendering policy, most notably a move to design-build-operate (DBO) projects. As a result, there are now 35 designated Hub Centres. Only 5 of the Hub Centres are producing Class A Biosolids. These are Ringsend, Killamey, Carlow, Navan and Osberstown. Ringsend is the only Hub Centre that is fully operational, treating sludge from surrounding regions by Thermal Drying. Killamey is producing Class A Biosolids using Autothermal Thermophilic Aerobic Digestion (ATAD) but is not, as yet, treating imported sludge. The remaining three plants are producing Class A Biosolids using Alkaline Stabilisation. Anaerobic Digestion with post pasteurisation is the most common form of sludge treatment, with 11 Hub Centres proposing to use it. One plant is using ATAD, two intend to use Alkaline Stabilisation, seven have selected Thermal Drying and three have selected Composting. While the remaining plants have not decided which sludge treatment to select, this is because of incomplete Sludge Management Plans and on DBO contracts. Analysis of sludges from the Hub Centres showed that all Irish sewage sludge is safe for agricultural reuse as defined by the Waste Management Regulations {Use of Sewage Sludge in Agriculture) (S.I. 267/2001), providing that a nutrient management plan is taken into consideration and that the soil limits of the 1998 (S.I. 148/1998) Waste Management Regulations are not exceeded.

Energy from waste (EfW): a feasibility study on the economic and the environmental co-benefits of biogas production within rural communities

Energy from waste (E/W) technologies in the form o f biogas plants, CHP plants and other municipal solid waste (MSW) conversion technologies, have been gaining steady ground in the provision o f energy throughout Europe and the UK. Urban Waste Water Treatment Plants (UWWTP) are utilising much o f the same biochemical processes common to these E/W plants. Previous studies on Centralised Anaerobic Digestion (CAD) within Ireland found that the legislative and economic conditions were not conducive to such an operation on the grounds o f low energy price for electric and heat energy, and due to the restrictive nature o f the allowable feedstocks. Recent changes to the Irish REFIT tariff on energy produced from Anaerobic digestion; alterations to the regulation o f the allowable use o f animal by products(ABP); the recent enactment o f the Renewable Energy D irective (09/28/EC) and a subsequent review o f the draft Biowaste Directive (2001) required that the issue o f decentralised energy production in Ireland be reassessed. In this instance the feasibility study is based on a extant rural community, centred around the village o f Woodford Co Galway. The review found that the prevailing conditions were now such that it was technically and economically feasible for this biochemical process to provide energy and waste treatment facilities at the above location. The review also outlines the last item which is preventing this process from becoming achievable, specifically the lack o f a digestate regulation on land spreading which deals specifically with biowaste. The study finds that the implementation o f the draft EU biowaste regulations, with amendments for Cr and Hg levels to match the proposed Irish regulation for compost, would ensure that Ireland has some o f the most restrictive regulations in Europe for this application. The delay in completing this piece o f legislation is preventing national energy and waste issues from being resolved in a planned and stepwise fashion. A proposed lay out for the new Integrated Waste from Energy Plant (IW/EP) is presented. Budget economic projections and alternative revenue streams are outlined. Finally a review o f the national policies regarding the Rural Development Plan (RDP), the Rural Planning Guidelines (RPG) and the National Renewable Energy Action Plan (NREAP) are examined against the relevant EU directives.

Effects of selected post harvest processes on brown crab (Cancerpagurus L.) and European lobster (Homarus gammarus L.) from Irish Crustacean Fisheries

The crustacean fishery is important to the socio economics of rural and island communities around Ireland; with brown crab (Cancer pagurus) and European lobster (.Homarus gammarus) being the most valuable shellfish species. Brown crab and lobster are marketed live with the majority being exported from Ireland to southern Europe. Post capture processes used in Ireland are very subjective but promote fresh, live products. Common practices used in the crustacean fishery include nicking of brown crab and long term storage of lobster. This study showed that nicking resulted in elevated mean lactate levels of 17.90% (StDev ± 1.74) and elevated mean glucose levels of 120.55 % (StDev ± 0.26) with mean circulating bacteria levels 9 times greater in nicked crab. Nicking resulted in 96.3% increase in tissue necrosis and a subsequent reduction in product quality. These factors possibly compromise the host’s defense system, which may ultimately reduce the animal’s ability to cope with additional stressors caused by post-harvest processes. Long term storage allows lobster to be stored until the market is less saturated and prices are higher. This investigation found that some lobsters contracted bacterial biofilms as a result of long term storage. Bacteria isolated from biofilms were identified as Arcobacter and Campylobacterales with identity and alignment scores of 80% andd 88% respectively.

Alternatives to Aerobic Exercise Prescription in Patients with Chronic Heart Failure

Background: Exercise is essential for patients with heart failure as it leads to a reduction in morbidity and mortality as well as improved functional capacity and oxygen uptake (v̇O2). However, the need for an experienced physiologist and the cost of the exam may render the cardiopulmonary exercise test (CPET) unfeasible. Thus, the six-minute walk test (6MWT) and step test (ST) may be alternatives for exercise prescription. Objective: The aim was to correlate heart rate (HR) during the 6MWT and ST with HR at the anaerobic threshold (HRAT) and peak HR (HRP) obtained on the CPET. Methods: Eighty-three patients (58 ± 11 years) with heart failure (NYHA class II) were included and all subjects had optimized medication for at least 3 months. Evaluations involved CPET (v̇O2, HRAT, HRP), 6MWT (HR6MWT) and ST (HRST). Results: The participants exhibited severe ventricular dysfunction (ejection fraction: 31 ± 7%) and low peak v̇O2 (15.2 ± 3.1 mL.kg-1.min-1). HRP (113 ± 19 bpm) was higher than HRAT (92 ± 14 bpm; p < 0.05) and HR6MWT (94 ± 13 bpm; p < 0.05). No significant difference was found between HRP and HRST. Moreover, a strong correlation was found between HRAT and HR6MWT (r = 0.81; p < 0.0001), and between HRP and HRST (r = 0.89; p < 0.0001). Conclusion: These findings suggest that, in the absence of CPET, exercise prescription can be performed by use of 6MWT and ST, based on HR6MWT and HRST

Fermentação da gelose pelas bacterias anaerobias

1 - Anaerobic bacteria of the Clostridium genus acidify mineral media without when agar is added. 2 - Acidulation results from the attack on the agar as a source of carbon. 3 - The quantity of CO² produced by the decomposition of the agar is approximately that obtained with soil bacteria as shown by Waksmann and Diehm working with hemicelluloses. Although galactone is less atacked than the other hemicelluloses the acidity produced is sufficient to disturb the fermentation tests in semi-solid media with agar. 4 - The acidulation of Spray's sugar-free control medium is probably due to the decomposition of the agar by anaerobes. The acidity produced may interfere with the acidity of the fermentation of the sugar in Spray's test or may be added to it, thus giving a false indication of the real acidity.

Mitochondrial ultrastructural and atpase changes during the life cycle of Ascaris Suum

Ultrastructural morphology and ATPase specific activities of mitochondria isolated from 1-celled fertilized egg, 10-day embryo, 21-day infective larvae and adult body wall muscle of Ascaris suum and rat liver were determined and compared. Although cristae of both muscle and egg mitochondria contained numerous elementary particles with head pieces of conventional diameter (85 A), each muscle mitochondrion contained relatively few, short cristae with a diminished frequency of elementary particles and associated ATPase activity. These morphological relationships are related to the previous conclusion that the transition from an aerobic to an essentially anaerobic metabolism is intimately associated with the mitochondrion and is a normal and mandatory feature of development.

Sonication of removed breast implants for improved detection of subclinical infection.

BACKGROUND: Capsular fibrosis is a severe complication after breast implantation with an uncertain etiology. Microbial colonization of the prosthesis is hypothesized as a possible reason for the low-grade infection and subsequent capsular fibrosis. Current diagnostic tests consist of intraoperative swabs and tissue biopsies. Sonication of removed implants may improve the diagnosis of implant infection by detachment of biofilms from the implant surface. METHODS: Breast implants removed from patients with Baker grades 3 and 4 capsular contracture were analyzed by sonication, and the resulting sonication fluid was quantitatively cultured. RESULTS: This study investigated 22 breast implants (6 implants with Baker 3 and 16 implants with Baker 4 capsular fibrosis) from 13 patients. The mean age of the patients was 49 years (range, 31-76 years). The mean implant indwelling time was 10.4 years (range, 3 months to 30 years). Of the 22 implants, 12 were used for breast reconstruction and 10 for aesthetic procedures. The implants were located subglandularly (n = 12), submuscularly (n = 6), and subcutaneously (n = 4). Coagulase-negative staphylococci, Propionibacterium acnes, or both were detected in the sonication fluid cultures of nine implants (41%), eight of which grew significant numbers of microorganisms (>100 colonies/ml of sonication fluid). CONCLUSIONS: Sonication detected bacteria in 41% of removed breast implants. The identified bacteria belonged to normal skin flora. Further investigation is needed to determine any causal relation between biofilms and capsular fibrosis.