A report on frame and catch assessment surveys on Nabugabo lakes, north west, Lake Victoria Basin, Uganda

The Nabugabo lakes are an important source of affordable protein food in the form of fish, income, water for domestic and commercial purposes (aquaculture farm and Hotels), handcraft materials (mats, hats, roof thatch) and fishing floats and rafts. Nabugabo lakes provide employment, income and export earnings to Uganda that flow from the act of harvesting the fish. In Uganda the fisheries sector directly employs 350,000 people and indirectly 1.2 million people. In 2005, it is estimated that about 370,000 mt fish export (97-98% Nile perch) earned Uganda US $ 143 Million up from US $ 103 million in 2004 .and up from US $ 45 million in 1996. , making it almost become the first non' traditional export commodity. The Nabugabo lakes are also import for cultural values and fish species from these lakes are important in evolutionary studies. The fishery sector is therefore very important in Uganda's socio-economic life. Despite the above values to the communities and global biodiversity roles, the amount of fish caught and the number fishing fleets operating on the Nabugabo lakes to guide management of the lake are lacking. The fishery that exists in these lakes is largely for subsistence and commercial purposes specific for Lake Nabugabo based on introduced species (Nile perch and Nile Tilapia). The fish is caught using mainly gill nets and long line hooks.

Y chromosome haplotypes reveal prehistorical migrations to the Himalayas

By using 19 Y chromosome biallelic markers and 3 Y chromosome microsatellite markers, we analyzed the genetic structure of 31 indigenous Sino-Tibetan speaking populations (607 individuals) currently residing in East, Southeast, and South Asia. Our results showed that a T to C mutation at locus M122 is highly prevalent in almost all of the Sino-Tibetan populations, implying a strong genetic affinity among populations in the same language family. Furthermore, the extremely high frequency of H8, a haplotype derived from M122C, in the Sino-Tibetan speaking populations in the Himalayas including Tibet and northeast India indicated a strong bottleneck effect that occurred during a westward and then southward migration of the founding population of Tibeto-Burmans. We, therefore, postulate that the ancient people, who lived in the upper-middle Yellow River basin about 10,000 years ago and developed one of the earliest Neolithic cultures in East Asia, were the ancestors of modem Sino-Tibetan populations.

Paternal genetic affinity between western Austronesians and Daic populations

Background: Austronesian is a linguistic family spread in most areas of the Southeast Asia, the Pacific Ocean, and the Indian Ocean. Based on their linguistic similarity, this linguistic family included Malayo-Polynesians and Taiwan aborigines. The lingui

Breeding biology and monosex male seed production of Genetically Improved Farmed Tilapia (GIFT) strain of Oreochromis niloticus L. in Bangladesh

A study on the breeding biology of the GIFT strain of Nile tilapia, Oreochromis niloticus, was conducted for a period of five months. The sex ratio of the parent individuals was optimized for performance in spawn production, where the best results were obtained with a sex ratio of female to male of 4:1 compared to those of 3:1 and 2:1. The diameter of eggs obtained from the GIFT stock had major and minor axes of 2.19±0.09 and 1.72±0.07 mm, respectively, with no significant differences between the treatments. The average number of eggs produced was 392±22 per female, with fertilization and hatching rates ranging between 94-96% and 85-88%, respectively. No significant variation was observed between the treatments. Breeding frequencies per female in the three treatment groups ranged between 10-40 days and the highest value was obtained at a female to male sex ratio of 4: l. In an other experiment, l7 aMethyltestosterone (MT) was applied orally to the fry at their first feeding stage with treatments- 1, 2, 3 and 4 at the dosage of 100, 80, 60 and 40 mg/kg feed respectively, for the period of 28 days. The mean percentage of males obtained in treatments, 1, 2, 3 and 4 were 98, 97, 95 and 68, respectively. Treatments-1, 2 and 3 did not differ significantly (P>0.05) from each other but treatment 4 showed significant variation (P<0.05) from other treatments. The results showed that MT-100, 80 and 60 mg/kg feed administered for 28 days produced close to cent percent male population of the GIFT strains in aquaria.

Pulsed field magnetization of a high temperature superconducting motor

As we known, the high temperature (77 K) superconducting (HTS) motor is considered as a competitive electrical machine by more and more people. There have been various of designs for HTS motor in the world. However, most of them focus on HTS tapes rather than bulks. Therefore, in order to investigate possibility of HTS bulks on motor application, a HTS magnet synchronous motor which has 75 pieces of YBCO bulks surface mounted on the rotor has been designed and developed in Cambridge University. After pulsed field magnetization (PFM) process, the rotor can trap a 4 poles magnetic field of 375 mT. The magnetized rotor can provide a maximum torque of 49.5 Nm and a maximum power of 7.8 kW at 1500 rpm. © 2010 IEEE.

Phylogeny of the bears (Ursidae) based on nuclear and mitochondrial genes

The taxomic classification and phylogenetic relationships within the bear family remain argumentative subjects in recent years. Prior investigation has been concentrated on the application of different mitochondrial (mt) sequence data, herein we employ tw

Phylogenetic studies of pantherine cats (Felidae) based on multiple genes, with novel application of nuclear beta-fibrinogen intron 7 to carnivores

The pantherine lineage of the cat family Felidae (order: Carnivora) includes five big cats of genus Panthera and a great many midsized cats known worldwide. Presumably because of their recent and rapid radiation, the evolutionary relationship among pantherines remains ambiguous. We provide an independent assessment of the evolutionary history of pantherine lineage using two complete mitochondrial (mt) genes (ND2 and ND4) and the nuclear beta-fibrmogen intron 7 gene, whose utility in carnivoran phylogeny was first explored. The available four mt (ND5, cytb, 12S, and 16SrRNA) and two nuclear (IRBP and TTR) sequence loci were also combined to reconstruct phylogeny of 14 closely related cat species. Our analyses of combined mt data (six genes; approximate to 3750 bp) and combined mt and nuclear data (nine genes; approximate to 6500 bp) obtained identical tree topologies, which were well-resolved and strongly supported for almost all nodes. Monophyly of Panthera genus in pantherine lineage was confirmed and interspecific affinities within this genus revealed a novel branching pattern, with P. tigris diverging first in Panthera genus, followed by P. onca, P. leo, and last two sister species P. pardus and P. uncia. In addition, close association of Neofelis nebulosa to Panthera, the phylogenetic redefinition of Otocolobus manil within the domestic cat group, and the relatedness of Acinonyx jubatus and Puma concolor were all important findings in the resulting phylogenies. The potential utilities of nine different genes for phylogenetic resolution of closely related pantherine species were also evaluated, with special interest in that of the novel nuclear beta-fibrinogen intron 7. (c) 2005 Elsevier Inc. All rights reserved.

A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the Phasianidae

Background: The Galliformes is a well-known and widely distributed Order in Aves. The phylogenetic relationships of galliform birds, especially the turkeys, grouse, chickens, quails, and pheasants, have been studied intensively, likely because of their close association with humans. Despite extensive studies, convergent morphological evolution and rapid radiation have resulted in conflicting hypotheses of phylogenetic relationships. Many internal nodes have remained ambiguous. Results: We analyzed the complete mitochondrial (mt) genomes from 34 galliform species, including 14 new mt genomes and 20 published mt genomes, and obtained a single, robust tree. Most of the internal branches were relatively short and the terminal branches long suggesting an ancient, rapid radiation. The Megapodiidae formed the sister group to all other galliforms, followed in sequence by the Cracidae, Odontophoridae and Numididae. The remaining clade included the Phasianidae, Tetraonidae and Meleagrididae. The genus Arborophila was the sister group of the remaining taxa followed by Polyplectron. This was followed by two major clades: ((((Gallus, Bambusicola) Francolinus) (Coturnix, Alectoris)) Pavo) and (((((((Chrysolophus, Phasianus) Lophura) Syrmaticus) Perdix) Pucrasia) (Meleagris, Bonasa)) ((Lophophorus, Tetraophasis) Tragopan))). Conclusions: The traditional hypothesis of monophyletic lineages of pheasants, partridges, peafowls and tragopans was not supported in this study. Mitogenomic analyses recovered robust phylogenetic relationships and suggested that the Galliformes formed a model group for the study of morphological and behavioral evolution.

Stepwise loss of motilin and its specific receptor genes in rodents

Specific interactions among biomolecules drive virtually all cellular functions and underlie phenotypic complexity and diversity. Biomolecules are not isolated particles, but are elements of integrated interaction networks, and play their roles through specific interactions. Simultaneous emergence or loss of multiple interacting partners is unlikely. If one of the interacting partners is lost, then what are the evolutionary consequences for the retained partner? Taking advantages of the availability of the large number of mammalian genome sequences and knowledge of phylogenetic relationships of the species, we examined the evolutionary fate of the motilin (MLN) hormone gene, after the pseudogenization of its specific receptor, MLN receptor (MLNR), on the rodent lineage. We speculate that the MLNR gene became a pseudogene before the divergence of the squirrel and other rodents about 75 mya. The evolutionary consequences for the MLN gene were diverse. While an intact open reading frame for the MLN gene, which appears functional, was preserved in the kangaroo rat, the MLN gene became inactivated independently on the lineages leading to the guinea pig and the common ancestor of the mouse and rat. Gain and loss of specific interactions among biomolecules through the birth and death of genes for biomolecules point to a general evolutionary dynamic: gene birth and death are widespread phenomena in genome evolution, at the genetic level; thus, once mutations arise, a stepwise process of elaboration and optimization ensues, which gradually integrates and orders mutations into a coherent pattern.

The Acquisition of an Inheritable 50-bp Deletion in the Human mtDNA Control Region Does Not Affect the mtDNA Copy Number in Peripheral Blood Cells

The mitochondrial DNA (mtDNA) control region is believed to play an important biological role in mtDNA replication. Large deletions in this region are rarely found, but when they do occur they might be expected to interfere with the replication of the molecule, thus leading to a reduction of mtDNA copy number. During a survey for mtDNA sequence variations in 5,559 individuals from the general Chinese population and 2,538 individuals with medical disorders, we identified a 50-bp deletion (m.298_347del50) in the mtDNA control region in a member of a healthy Han Chinese family belonging to haplogroup B4c1b2, as suggested by complete mtDNA genome sequencing. This deletion removes the conserved sequence block II (CSBII; region 299-315) and the replication primer location (region 317-321). However, quantification of the mtDNA copy number in this subject showed a value within a range that was observed in 20 healthy subjects without the deletion. The deletion was detected in the hair samples of the maternal relatives of the subject and exhibited variable heteroplasmy. Our current observation, together with a recent report for a benign 154-bp deletion in the mtDNA control region, suggests that the control of mtDNA replication may be more complex than we had thought. Hum Mutat 31:538-543, 2010. (C) 2010 Wiley-Liss, Inc.

S-DABO 类衍生物及AZT-氟喹喏酮类偶联物体外抗HIV 活性及机制研究

本论文由2 个相对独立的部分组成: S-DABO 类衍生物体外抗HIV 活性及 其机制研究和AZT－氟喹喏酮类偶联物体外抗HIV-1 活性及其机制研究。 HIV 逆转录酶抑制剂一直是抗HIV 药物研发的热点。该类抑制剂靶定在病 毒复制周期早期，为HAART 疗法提供了很多新的药物组合。目前FDA 批准上 市的逆转录酶抑制剂虽然有很多，但由于较严重的毒副作用、HIV 病毒易变异、 耐药性的出现等问题还需要开发更多的新的逆转录酶抑制剂。本论文对23 个 S-DABO 类化合物和8 个AZT－氟喹喏酮类偶联物的体外抗HIV 活性进行检 测，并对其中活性较高的化合物进行靶点和机制研究。 23 个S-DABO 类化合物采用对C8166 细胞的毒性试验，对HIV-1ⅢB 诱导的 合胞体形成的抑制试验和对HIV-1ⅢB 急性感染的MT-4 细胞的保护试验进行抗 HIV-1 活性初步筛选。试验结果发现所有化合物均对多种HIV 宿主细胞毒性小， 其中22 个化合物具有抗HIV-1 活性，特别是化合物RZK-4 和RZK-5，其对 HIV-1ⅢB 诱导的合胞体形成的SI 值（Selective index）分别为>16666 和>38462； RZK-4 和RZK-5 对HIV-1ⅢB 急性感染的MT-4 细胞的保护的SI 值分别为2666.67 和2150.54，与相应的阳性对照药品NVP（Nevirapine）的SI 值相接近。以p24 抗原水平为指标，对其中20 个化合物的抗HIV-1 活性进行确证，发现这20 个 化合物均能抑制 HIV-1ⅢB p24 抗原的产生，其中RZK-4 和RZK-5 的EC50 值分 别为5.93 和5.74ng/ml，比相应的阳性对照药品NVP（Nevirapine）的EC50 值 要低（27.3ng/ml）。这些化合物对试验株HIV-1MN、临床分离株HIV-1KM018、非 核苷类抑制剂耐药株HIV-1ⅢB A17 也有较好的抑制效果。但这23 个S-DABO 类化合物对HIV-2 病毒株均无抑制作用。通过检测化合物对感染与未感染细胞的 融合的抑制、对HIV-1 逆转录酶和蛋白酶活性的抑制、对慢性感染H9 细胞 （H9/HIV-1ⅢB）中病毒复制的抑制等试验来探讨化合物的抗HIV-1 机制。结果 显示：有20 个化合物对HIV-1 蛋白酶（PR）有抑制作用，其中有17 个化合物 对HIV-1 逆转录酶（RT）有抑制作用；但所有化合物均不能抑制感染与未感染 细胞的融合，也不能抑制慢性感染H9 细胞中病毒的复制。试验结果表明，这 23 个S-DABO 类化合物主要通过抑制HIV-1 逆转录酶来发挥作用，它们是典型 的非核苷类RT 抑制剂。 8 个AZT－氟喹喏酮类偶联物采用对C8166 细胞的毒性试验，对HIV-1ⅢB 诱导的合胞体形成的抑制试验和对HIV-1ⅢB急性感染的MT-4 细胞的保护试验 进行抗HIV-1 活性初步筛选。试验结果发现其中2 个化合物SRLZ 和SROZ 有 较显著的抗HIV-1 活性，其对HIV-1ⅢB诱导的合胞体形成抑制的SI 值分别为 >41667 和>105263；对HIV-1ⅢB 急性感染的MT-4 细胞的保护的SI 值分别为 30162 和 6368，与AZT（Zidothymidine）的SI 值相近似。以p24 抗原水平为 指标，对其抗HIV-1活性进行确证，发现化合物SRLZ和SROZ均能抑制HIV-1ⅢB p24 抗原的产生，其EC50 值分别为 0.71 和2.1ng/ml,比相应的阳性对照药品AZT 的EC50 值要低（3.5ng/ml）。化合物SRLZ 和SROZ 对临床分离株HIV-1KM018 也有较好的抑制活性，其EC50 值分别为1.4 和22ng/ml。通过检测化合物对慢 性感染H9 细胞（H9/HIV-1ⅢB）中病毒复制的抑制试验来探讨化合物的抗HIV-1 机制，结果表明化合物SRLZ 和SROZ 均不能抑制慢性感染H9 细胞中病毒的 复制。通过检测化合物对金黄色葡萄球菌的抑制作用来检测其抗菌活性，化合 物SRLZ 和SROZ 对金黄色葡萄球菌有较好的抑制作用，其MIC（Minimum inhibitory concentration）值分别为14.65 和7.32μg/ml，与其相应的阳性对照药 物的MIC 值相类似。试验结果表明：药物—药物偶连这种化学修饰方法并没有 改变AZT－氟喹喏酮类偶联物的抗HIV 作用靶点，但也没有较大地影响到其体 外抗病毒活性和抗微生物活性。

光动力疗法抑制人免疫缺陷病毒复制的实验研究

通过对人免疫缺陷病毒复制过程的抑制作用研究，探索光动力疗法(PDT)在艾滋病防治中的潜在价值。使 用不同稀释浓度的光敏剂血卟啉单甲醚(HMME)和亚甲蓝(MB)分别与人免疫缺陷病毒HIV一1Ⅲs或宿主细胞 MT4，C8166或H9／HIV-IⅢB孵育2 h。以波长630 nm能量密度0．3 J／cm2的半导体激光进行照射。继续孵育若干 小时后，用噻唑蓝(MTT)比色法检测细胞存活率或合胞体计数，同时收集培养上清液用ELISA法检测HIV-I p24 抗原。结果表明，光动力疗法能显著抑制人免疫缺陷病毒诱导的细胞一细胞融合(HMME-PDT抑制率64．68％， MB-PDT抑制率61．56％)和病毒一细胞融合(HMME—PDT抑制率85％，Mt}PDT抑制率73．64％)，并对游离病毒 有很强的杀伤作用，最高可达到100％。光动力疗法不能抑制慢性感染期和急性感染2 h后病毒的复制过程。可 见光动力疗法对游离病毒和病毒感染诱导的膜融合有显著抑制作用，有可能为艾滋病的防治提供一种新的方法。

Trophic State Index, morphoedaphic index and fish yield prediction in a sub-tropical lake, Manchar (Sindh), Pakistan

Limnological factors of a sub-tropical lake Manchar were studied on seasonal basis. The mean values of various parameters were: transparency, (secchi disc reading): 90.5 cm, Orthophosphate: 0.257 mg/l, TDS: 3310,5 mg/l, Conductivity: 5232 µs/l, Total Chlorophyll (Planktonic): 31.3 µg/l Planktonic biomass: 5466 µg/l. Trophic state index (TSI) was calculated by using Carlson's (1977) equations. Mean TSI for transparency was 61, while for orthophosphate and chlorophyll, it was 82 and 64 respectively. TSI values indicate advanced eutrophic state of Manchar Lake. Morphoedaphic index (MEI) was also calculated on seasonal basis. The mean values were, TDS: 1103, conductivity: 1744, alkalinity: 60, transparency: 29 and biomass (plankton dry weight): 1746. Fish yield prediction for Manchar Lake (Z =3m, mean area=100 km²) was calculated by using MEI values. The results were quite different among various parameters. Conductivity (89.1mt/y), biomass (67.6 mt/y) and TDS (44.6 mt/y) were found to be good predictors of fish yield. Chlorophyll, transparency and alkalinity values gave very low estimate.

Anti-HIV-1 Activity of Lignans from the Fruits of Schisandra rubriflora

This study investigated the 70% aqueous acetone extract of the fruits of Schisandra rubriflora which led to the isolation of eight lignans, including a new isolate, rubrisandrin C (1), and seven known lignans (2-8). The structure of 1 was established by extensive 1D and 2D NMR spectroscopy and its absolute stereochemistry was determined by CD spectrum. Compounds 1-5 and 7-8 were evaluated for their anti-HIV-1 activity that showed inhibitory activity on HIV-1(IIIB) induced syncytium formation with EC50 values in the range of 2.26 similar to 20.4 mu g/mL. Compounds 1 and 7 exerted their obvious protection of HIV-1(IIIB) inducted MT-4 host cells lytic effects with a selectivity index of 15.4 and 24.6, respectively.