Migration and Residence Patterns of Salmonids in Puget Sound, Washington

Thesis (Ph.D.)--University of Washington, 2016-08

Parasites of endemic and introduced fishes of Zaianderud River of the Esfahan

In this research, 9 species of local and introduced fishes of the Zayandehroud River in Esfahan province (in the Sarmatian region belonging to the large paleoarctic fauna) in 6 seasons (winter 2003, spring, summer, autumn and winter 2004 and summer 2005) were parasitologically studied. The local fishes included alburnoides bipunctatus, Alburnus maculatus, Aphanius vladykovi, Capoeta aculeata & Capoeta damascina & the introduced fishes included Aristichthys nobilis, Carassius auratus, Ctenopharyngodon idella and Cyprinus carpio. Upon being hunted, the fishes were transferred alive to Esfahan Aquatics Breeding Center and physiologically studied after the determination of their species and genus by identification keys Berg (30), Coad (31), Saadati (51), Abdoli (20) and Holchic (38). 32 species of parasites were totally identified as follows: 6 Protozoan species including Ichthyophthirius multifiliis, 5 Trichodina species, 2 Myxobolus species including Myxobolus cristatus & Myxobolus saidovi, 16 monogenea species including Dactylogyrus alatus. D. anchorutus, D. baueri, D. chalcalburni, D. chramuli, D. extensus, D. gracilis, D. lamellatus, D. lenkorani and D. pukher, 4 Dactylogyrus spp. 2 Gyrodactylus species, 1 species of Digenea, Diplostomum spthaceum, 4 species of Cestoda including Bothriocephallus gowkongensis, khawia armeniaca, Ligulaintestinalis. Caryophyllaeus sp. 1 Acanthocephala: Acanthocephalo rhynchoides cholodkowsky, 2 species of the crustaceans including the mature & copepodian stages of Lernaea cyprinacea & 1 sp of the genus Lamproglena. Out of all the 166 pcs of the fishes hunted in this research, 127 fishes (76.5%) were infected, and 39 fishes (23.50%) were not infected. In the fishes studied, having 14 of 32 species of the parasites identified, Capoeta aculeata displayed the most variety of infection, and having only 1 sp of the parasites. Aristichthys nobilis displayed the least variety of infection. The new findings of the research will follow: Myxobolus saidovi sp is reported for the 1st time from Iran's fresh water fishes, Alburnus maculatus and Capoeta aculeata are new hosts for M. saidovi and M. cristatus, respectively. Regarding monogenea Capoeta damascina & C. aculeata were reported as the new hosts for parasite D. pukher. The presence of D. pukher the infection of Capoeta aculeata with D. chramuli, D. lenkorani and D. gracilis in the Zayandehroud river were the 1st report. Regarding the Cestodea, Bothriocephalus gowkongensis was reported to be hosted by Aphanius Vladykovi for the 1St time in Iran.

Some biological and ecological considerations for research in the management of the fisheries of Lakes Victoria and Kyoga

There is little doubt that the exploitation of the current fisheries of Lakes Victoria and Kyoga requires close monitoring with a view to enforce adherence to prudent management practices. Many indigenous fishes have gradually disappeared from the commercial fishery of both lakes. In the Uganda portion of Lake Victoria for instance Okaronon and Wadanya (in press) have shown that:- 1. The once preponderant haplochromiine taxon ceased to feature in the commercial catches in 1979. 2. The lung-fish (Protopterus aethiopicus) which formerly contributed significantly to the commercial landings had declined to minor species status by the mid 1980s. 3. The catfishes Clarias mossambicus and Bagrus docmac, formerly major fish species, contributed insignificant quantities to the commercial fishery since the early and mid 1980s, respectively. Similar trend have been "reported in the Kenya and Tanzania portions of Lake Victoria (Bwathondi, 1985; Mainga, 1985, Witte and Goudswaard, 1985). On the other hand since their establishment all round the lake in the early to mid 1980s some introduced fishes namely Nile perch (Lates niloticus) and Nile tilapia (Oreochromis niloticus) built up impressive stocks in Lake Victoria (Ssentongo and Welcomme, 1985, Okaronon et al. 1985; Okaronon and Wadanya, in press). Togetther with the native pelagic cyprinid Rastrineobola argentea or Dagaa/Mukene the introduced fishes have contributed unprecidented catches, stimulating vibrant commercial fisheries which have yielded significant social economic benefits to the peoples of the three states riparian to the Lake (Reynolds and Greboval, 1988; Kudhongania et al in press). The impressive landings particularly of the Nile perch and Nile tilapia have also led to rapid industrialisation of fish processing in East Africa mainly for the export market. Fish export has now the potential of a major foreign exchange enterprise in the region.

The bioaccumulation of persistent contaminants by zebra mussels and their effects on state-endangered common terns

Common terns currently are listed as endangered or threatened in many states, including Illinois, Vermont, Pennsylvania, Ohio, Wisconsin, Michigan, and New York, and a species of special concern by the U.S. Fish and Wildlife Service (USFWS, 2002). The sole remaining nesting colony in Illinois is located at the Naval Station Great Lakes (NSGL) in Lake County where intensive management by the Illinois Department of Natural Resources has reduced nest predation and increased the number of eggs that hatch. However, the overall reproductive success (the number of young successfully reaching independence) has not improved. Observations of gross deformities in hatchlings (i.e. compromised feather development and cross-bill), lethargic behavior of young birds, and lesions, suggested the influence of environmental contaminants (Jablonski et al., 2005). I investigated if there were significant levels of environmental contaminants in eggs and nestlings of common terns. While there were minimal concentration of selenium, mercury, lead, and cadmium, there were large concentration of polychlorinated biphenyls (PCBs) in both the eggs and nestlings. The greater amounts of PCBs in older chicks than younger chicks suggest local contamination. In order to potentially manage the factors responsible for exposing the terns to PCBs I investigated the pathway by which PCBs were exposed to terns. The two most likely biological pathways as determined by research on Great Lake fishes were investigated. The first pathway is through atmospheric deposition of PCBs and resuspension of PCB-ladel sediment which are subsequently acquired by filter-feeding fish (e.g. alewives, Alosa pseudoharengus) and then pelagic fish (e.g. lake trout, Salvelinus namaychus) or in this case terns. The second pathway explored was via the biodeposits of zebra mussels which are consumed by round gobies (Neogobius melanostromus) and ultimately littoral fish (e.g. small-mouthed bass, Micropterus dolomieui) or terns. Because common terns breed in near-shore sites where concentrations of zebra mussels are found, as well as forage in more pelagic environments it is possible that either or both pathways may be contributing to their PCB exposure. Field experiments and stable isotope analyses demonstrated that the most likely pathway by which terns are exposed to PCBs is via alewives, similar to how apex predators such as lake trout acquire PCBs. Biodeposits from zebra mussels do not appear to be a significant factor in PCB accumulation in terns. The impact of PCB exposure on birds can vary widely, however in this situation we choise to investigate one specific behavior often affected by PCB exposure, parental attentiveness. PCBs are known to cause endocrine disruption which ultimately results in reduced brooding of young and incubation of eggs. I used temperature sensors to quantify nest temperatures and parental attentiveness during incubation. High concentrations of PCBs in our study population appear to be leading to poor parental attentiveness, and extended periods of absence during incubation and brooding, ultimately leading to poor reproductive success. Common terns are perilously close to being extirpated in Illinois and management of PCB exposure will be difficult. I propose that additional testing should be conducted to locate a site with less PCB contamination and then to move the tern colony to this location, possibly using social cues as has been done with other tern species in Illinois. PCBs are having a profound impact on common tern populations in Illinois and without moving the colony it is likely that the population will continue to decline.

Spatial behavior of two coral reef fishes within a Caribbean Marine Protected Area

A better understanding of the key ecological processes of marine organisms is fundamental to improving design and effective implementation of marine protected areas (MPAs) and marine biodiversity. The movement behavior of coral reef fish is a complex mechanism that is highly linked to species life-history traits, predation risk and food resources. We used passive acoustic telemetry to study monthly, daily and hourly movement patterns and space use in two species, Schoolmaster snapper (Lutjanus apodus) and Stoplight parrotfish (Sparisoma viride). We investigated the spatial overlap between the two species and compared intra-specific spatial overlap between day and night. Presence-absence models showed different diel presence and habitat use patterns between the two species. We constructed a spatial network of the movement patterns, which showed that for both species when fish were detected by the array of receivers most movements were made around the coral reef habitat while occasionally moving to silt habitats. Our results show that most individuals made predictable daily crepuscular migrations between different locations and habitat types, although individual behavioral changes were observed for some individuals across time. Our study also highlights the necessity to consider multiple species during MPA implementation and to take into account the specific biological and ecological traits of each species. The low number of fish detected within the receiver array, as well as the intraspecific variability observed in this study, highlight the need to compare results across species and individuals to be used for MPA management.

Trophic niche overlap of sprat and commercial small pelagic teleosts in the Gulf of Lions (NW Mediterranean Sea)

Increasing abundance of non-commercial sprats and decreasing biomass and landings of commercial anchovies and sardines justify the need to study the feeding ecology and trophic niche overlap of these planktivorous species in the Gulf of Lions. Their diet has been investigated on the basis of stomach content and stable isotope analyses in 2011 and 2012 according to different depths and regions in the study area. The main prey were Corycaeidae copepods, Clauso/Paracalanus, Euterpina acutifrons and Microsetella, for sprats and small copepods, such as Microsetella, Oncaea and Corycaeidae, for anchovies and sardines. This is the first time that the diet of sprats is described in the Gulf of Lions. Sprats fed on a larger size spectrum of prey and seem to be more generalist feeders compared to anchovies and sardines. Ontogenetic changes as well as spatial and temporal variations of the diet occurred in the three species. Stable isotope analysis revealed mobility of sardines and sprats among feeding areas while anchovies exhibited preferred feeding areas. Sprats showed a higher relative condition assessed by C/N ratios than sardines and anchovies. Our results showed an overlap of the trophic niches for the three species, indicating a potential trophic competition in the Gulf of Lions.

Influence of environmental variability and age on the body condition of small pelagic fish in the Gulf of Lions

Endogenous and environmental variables are fundamental in explaining variations in fish condition. Based on more than 20 yr of fish weight and length data, relative condition indices were computed for anchovy and sardine caught in the Gulf of Lions. Classification and regression trees (CART) were used to identify endogenous factors affecting fish condition, and to group years of similar condition. Both species showed a similar annual cycle with condition being minimal in February and maximal in July. CART identified 3 groups of years where the fish populations generally showed poor, average and good condition and within which condition differed between age classes but not according to sex. In particular, during the period of poor condition (mostly recent years), sardines older than 1 yr appeared to be more strongly affected than younger individuals. Time-series were analyzed using generalized linear models (GLMs) to examine the effects of oceanographic abiotic (temperature, Western Mediterranean Oscillation [WeMO] and Rhone outflow) and biotic (chlorophyll a and 6 plankton classes) factors on fish condition. The selected models explained 48 and 35% of the variance of anchovy and sardine condition, respectively. Sardine condition was negatively related to temperature but positively related to the WeMO and mesozooplankton and diatom concentrations. A positive effect of mesozooplankton and Rhone runoff on anchovy condition was detected. The importance of increasing temperatures and reduced water mixing in the NW Mediterranean Sea, affecting planktonic productivity and thus fish condition by bottom-up control processes, was highlighted by these results. Changes in plankton quality, quantity and phenology could lead to insufficient or inadequate food supply for both species.

Fishing effort and the impact of fishing gears and fishing methods on fishes and fisheries of Kyoga basin lakes

Lake Kyoga at the time of Worthington Survey (Worthington, 1929) was fished by only natives around it. The fishing gears consisted of locally made basket traps, hooks and seine nets made out of papyrus. Fishing was mainly during the dry season as in wet season, the fishers would revert to crop growing. During 1937 to 1950s Oreochromis variabilis, oreochromis esculentus (Ngege) and Protopterus aethiopicus (Mamba) were the most important commercial fish species and contributed over 95% to the total landings until early 1950s when their proportions started to change as a result of changes in fishing techniques. The tilapiines' were then being caught using mainly basket traps and P.aethiopicus was caught in hooks prior to the mid 1950s.

An evaluation of surface micro- and mesoplastic pollution in pelagic ecosystems of the Western Mediterranean Sea

This study examines the distribution, abundance and characteristics of surface micro- and mesoplastic debris in the Western Mediterranean Sea. 41 samples were collected in 2011 (summer) and 2012 (summer). Results, firstly, revealed that micro- (<5mm) and mesoplastic debris were widely and uniformly distributed in this area with average concentrations of 130,000 parts/km(2) and 5700 parts/km(2), respectively. Importantly, a strong correlation between micro- and mesoplastic concentrations was identified. Secondly, a classification based on the shape and appearance of microplastics indicated the predominant presence of fragments (73 %) followed by thin films (14 %). Thirdly, the average mass ratio of microplastic to dry organic matter has been measured at 0.5, revealing a significant presence of microplastics in comparison to plankton. Finally, a correction method was applied in order to correct wind mixing effect on microplastics' vertical distribution. This data allows for a comprehensive view, for the first time, of the spatial distribution and nature of plastic debris in the Western Mediterranean Sea.

The changing fisheries of Lake Victoria, Uganda

Lake Victoria had a complex multi-species fishery dominated until the late 1970s by the tilapiine and haplochromine cichlids but with important subsidiary fisheries of more than 20 genera of non-cichlid fishes. Since the 1980s, however, the fishery has been dominated by the Nile perch (Lates niloticus), Nile tilapia (Oreochromis niloticus eduardianus) both introduced into the lake during the late 1950s and early 1960s and Rastrineobola argentea, a pelagic cyprinid. Although the actual landed commercial catch figures from the Uganda sector of the lake point to the increased landings since 1984, the catch rates in the experimental trawl fishery and mean weight of fish in both experimental trawl and commercial fishery have been on the decline.

Le Copépodes pélagiques de la Baie de Cauda (Viet-Nam)

The author presents his study on marine pelagic fishes collected on the coast of Annam, in the Bay of Cauda, where the Indochina government built the Institute of Oceanography. These samples allowed the systematic identification of pelagic Copepods.

High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species

Animal-associated microbiotas form complex communities, which are suspected to play crucial functions for their host fitness. However, the biodiversity of these communities, including their differences between host species and individuals, has been scarcely studied, especially in case of skin-associated communities. In addition, the intraindividual variability (i.e. between body parts) has never been assessed to date. The objective of this study was to characterize skin bacterial communities of two teleostean fish species, namely the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata), using a high-throughput DNA sequencing method. In order to focus on intrinsic factors of host-associated bacterial community variability, individuals of the two species were raised in controlled conditions. Bacterial diversity was assessed using a set of four complementary indices, describing the taxonomic and phylogenetic facets of biodiversity and their respective composition (based on presence/absence data) and structure (based on species relative abundances) components. Variability of bacterial diversity was quantified at the interspecific, interindividual and intraindividual scales. We demonstrated that fish surfaces host highly diverse bacterial communities, whose composition was very different from that of surrounding bacterioplankton. This high total biodiversity of skin-associated communities was supported by the important variability, between host species, individuals and the different body parts (dorsal, anal, pectoral and caudal fins).

Identification, diversity and distribution patterns of fish larvae in Khark & Kharko Coralline Islands ecosystem – Persian Gulf, by GIS method

Khark & Kharko Islands are the last Northern point for fringing coral reefs in Iranian side of the Persian Gulf. These Coralline habitats are the Protected Area and Wildlife Refugees with the total area of 2400 ha which located in the territory of Bushehr Province. This research carried out during 2006-2007 with monthly sampling from 12 stations, which selected around Islands and inshore waters with maximum depth of 20 meter. Sampling was conducted using by Bongo-Net plankton sampler with 500μ of mesh size. Totally, 1808 specimen from 45 family fish larvae was identified in studied area, including: 21 coralline fish larva families and 24 shore fish larvae such as pelagic and demersal fishes which some of them known as indicator, sentinel or endemic species for coral reef ecosystems. The results was shown that coral reef diversity in coral reefs (Khark & Kharko Islands) is more than other habitats such as estuary and river mouth, creeks, mangrove forest sites, and off shore water of the Persian Gulf and Oman Sea Iranian side. Among Identified families, Clupeidae, Blenniidae, Sillaginidae, Atherinidae and Tripterygiidae; with more abundance were dominant families in studied area. The pick of fish larvae abundance family were estimated in spring. There were significant differences between seasonally abundance and sub areas, but there were not significant differences in diversity indexes between Khark and Kharko stations with coastal stations (p< 0.05). The mean abundance of fish larvae were estimated 18.7083 larvae under 10m² of sea surface, and the mean diversity indexes and evenness were estimated 0.7135 and 0.565342 consequently, that was showed the area is under ecological stress for fish larvae, and wasn’t stable. Therefore, from the ecological point of view, only some of the fish larvae groups as like Clupeidae were dominant. Thus, they were the main cause of the fish larvae abundance change in studied area. Due to geographical location of Khark and Kharko Islands and among the environmental parameters, Its seems that the condition of sea current is the main cause for present or absent and distribution patterns of fish larvae in area. Abundance of fish larvae in west of Islands was higher than eastern parts in the spring. But this condition will be reversed in eastern part of Island and several coastal stations, so that the Islands surrounding clock wise current to cause fish larvae distribution patterns.

Survey on gill parasites of sturgeon fishes (Acipenseridae) in southern part of Caspian Sea with emphasis on Nitzschia sturionis Ablidgaard, 1794

Sturgeons are important because of producing the expensive caviar. With regard to decreasing of natural stocks of these fishes, cultured sturgeons farms are expanding, so infectious or non-infectious agents can cause problems in this industry. One of the most important infectious diseases, are parasitic diseases, like gill parasites. In this study from March 2007 to June 2008, gills of 122 sturgeons of south west of Caspian Sea, 44 samples of juveniles from freshwater farms and 25 samples of cultured fishes in freshwater were collected and examined. Parasites were separated and determination of species and prevalence of them were done. Nitzschia sturionis and Diclybothrium armatum (monogenea) with general prevalence 8.7% in Acipenser persicus and 25.6% in Acipenser stellatus from sea sturgeons and Trichodina (sp.1, sp.2) and Ichthyophthirius multifiliis from freshwater sturgeons, were separated. Statistical analysis was done according to species, sex, length and weight of fishes. Pathology, morphometric and morphological characters of Nitzschia sturionis were also studied. At the end, we have suggested ways for health management of farms for prevention of parasites entry.

Summary study of gill ectoparasite infections and their histopathologic effects in four species of freshwater ornamental fishes

Ornamental fish are more expensive in comparison with the other fish. It especially highlights in non-breeding fish (in imported one for importation costs). But of course, with entering the new and unhealthy fishes to aquarium or ponds, they may transmit a pathogen to others (interfere with Iran ornamental fish parasitic fauna). In this study (Dec. 2008- Sep. 2009), 400 fish gill arch from 4 species of ornamental fish (within focus on imported fish); namely, i.e. Goldfish (Carassius auratus), platyfish (Xiphophorus maculatus), Dwarf gourami (Colisa lalia) and Catfish (Hypostomus plecostomus) were inspected for gill ectoparasites and then pathologic effects (but in high- affected gill). In this study, seven protozoan and ten metazoan species, indeed seventeen parasite species were identified. Protozan parasites consist of: Trichodina spp. and Ichthyophthirius multifiliis were found in four fish species; Ichthyobodo necatrix (Costia necator/C. necatrix) and Cryptobia branchialis, were respectively found in Dwarf gourami and goldfish. The highest prevalence belongs to Ichthyophthirius (47%) in platyfish. Metazoan parasites consist of: Ancyrocephalus sp. (Dwarf gourami), Ancylodiscoides spp. (catfish and platyfish), Dactylogyrus vastator, D. baueri, D. formosus (only in goldfish) and Gyrodactylus spp. (in four fish species). The highest prevalence was related to Dactylogyrus vastator(82%) in goldfish. Histological effects in case with high prevalence of parasite were also observed, e.g., hypertrophy, Lamellar hyperplasia and fusion. In high-parasitized gill, there is dysfunction of gill.