Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

Cryptococcus neoformans is a pathogenic basidiomycetous yeast responsible for more than 600,000 deaths each year. It occurs as two serotypes (A and D) representing two varieties (i.e. grubii and neoformans, respectively). Here, we sequenced the genome and performed an RNA-Seq-based analysis of the C. neoformans var. grubii transcriptome structure. We determined the chromosomal locations, analyzed the sequence/structural features of the centromeres, and identified origins of replication. The genome was annotated based on automated and manual curation. More than 40,000 introns populating more than 99% of the expressed genes were identified. Although most of these introns are located in the coding DNA sequences (CDS), over 2,000 introns in the untranslated regions (UTRs) were also identified. Poly(A)-containing reads were employed to locate the polyadenylation sites of more than 80% of the genes. Examination of the sequences around these sites revealed a new poly(A)-site-associated motif (AUGHAH). In addition, 1,197 miscRNAs were identified. These miscRNAs can be spliced and/or polyadenylated, but do not appear to have obvious coding capacities. Finally, this genome sequence enabled a comparative analysis of strain H99 variants obtained after laboratory passage. The spectrum of mutations identified provides insights into the genetics underlying the micro-evolution of a laboratory strain, and identifies mutations involved in stress responses, mating efficiency, and virulence.

Sources of black carbon aerosols in South Asia and surrounding regions during the Integrated Campaign for Aerosols, Gases and Radiation Budget (ICARB)

This study examines differences in the surface black carbon (BC) aerosol loading between the Bay of Bengal (BoB) and the Arabian Sea (AS) and identifies dominant sources of BC in South Asia and surrounding regions during March-May 2006 (Integrated Campaign for Aerosols, Gases and Radiation Budget, ICARB) period. A total of 13 BC tracers are introduced in the Weather Research and Forecasting Model coupled with Chemistry to address these objectives. The model reproduced the temporal and spatial variability of BC distribution observed over the AS and the BoB during the ICARB ship cruise and captured spatial variability at the inland sites. In general, the model underestimates the observed BC mass concentrations. However, the model-observation discrepancy in this study is smaller compared to previous studies. Model results show that ICARB measurements were fairly well representative of the AS and the BoB during the pre-monsoon season. Elevated BC mass concentrations in the BoB are due to 5 times stronger influence of anthropogenic emissions on the BoB compared to the AS. Biomass burning in Burma also affects the BoB much more strongly than the AS. Results show that anthropogenic and biomass burning emissions, respectively, accounted for 60 and 37% of the average +/- standard deviation (representing spatial and temporal variability) BC mass concentration (1341 +/- 2353 ng m(-3)) in South Asia. BC emissions from residential (61 %) and industrial (23 %) sectors are the major anthropogenic sources, except in the Himalayas where vehicular emissions dominate. We find that regional-scale transport of anthropogenic emissions contributes up to 25% of BC mass concentrations in western and eastern India, suggesting that surface BC mass concentrations cannot be linked directly to the local emissions in different regions of South Asia.

The statistics of the second order response of an FPSO in spreading seas

An expression for the probability density function of the second order response of a general FPSO in spreading seas is derived by using the Kac-Siegert approach. Various approximations of the second order force transfer functions are investigated for a ship-shaped FPSO. It is found that, when expressed in non-dimensional form, the probability density function of the response is not particularly sensitive to wave spreading, although the mean squared response and the resulting dimensional extreme values can be sensitive. The analysis is then applied to a Sevan FPSO, which is a large cylindrical buoy-like structure. The second order force transfer functions are derived by using an efficient semi-analytical hydrodynamic approach, and these are then employed to yield the extreme response. However, a significant effect of wave spreading on the statistics for a Sevan FPSO is found even in non-dimensional form. It implies that the exact statistics of a general ship-shaped FPSO may be sensitive to the wave direction, which needs to be verified in future work. It is also pointed out that the Newman's approximation regarding the frequency dependency of force transfer function is acceptable even for the spreading seas. An improvement on the results may be attained when considering the angular dependency exactly. Copyright © 2009 by ASME.

La aventura del barco encantado y nuevas notas sobre las escrituras del viaje en el Quijote

Integran este número de la revista ponencias presentadas en Studia Hispanica Medievalia VIII: Actas de las IX Jornadas Internacionales de Literatura Española Medieval, 2008, y de Homenaje al Quinto Centenario de Amadis de Gaula.

A time domain computation method for dynamic behavior of mooring system

A quasi-steady time domain method is developed for the prediction of dynamic behavior of a mooring system under the environmental disturbances, such as regular or irregular waves, winds and currents. The mooring forces are obtained in a static sense at each instant. The dynamic feature of the mooring cables can be obtained by incorporating the extended 3-D lumped-mass method with the known ship motion history. Some nonlinear effects, such as the influence of the instantaneous change of the wetted hull surface on the hydrostatic restoring forces and Froude-Krylov forces, are included. The computational results show a satisfactory agreement with the experimental ones.

Dinámica poblacional de arvenses en el cultivo del pipian (Cucurbita pepo L.) producido bajo un sistema de manejo orgánico y un sistema de manejo convencional, en Tipitapa, Masaya 2007

Actualmente, el manejo de arvenses en las Cucurbitaceae es a base de herbicidas, repercutiendo en serios problemas al ambiente y al hombr e. En la finca experimental El Plantel, ubicado en el km 43 ½ carretera Tipitapa – Masaya, se estableció un estudio con el objetivo de conocer la dinámica poblacional de arvenses y su incidencia en el cultivo de pipián Cucurbita pepo L; producido bajo dos sistemas de manejo. Se evaluó un sistema convencional con el uso de Completo (12 - 30 - 10) 522.98 Kg/Ha, Urea 190.06 Kg/Ha, y un sistema orgánico con el uso Humus 10,886.95Kg/Ha, Compost: 21,900.62Kg/Ha, Biofertilizante: 14,765.21 Kg/Ha En una área 525m2, en tres parcelas de 80.5 m2, alternando con el pipián, el caupí. ( Vigna unguiculata . (L) Walp). En la diversidad se encontraron 13 especies en el sistema orgánico, predominando Tithonia rotundifolia (Mill) Blake, Boerhavia erecta L., Sorghum halepense (L) P e rs. Y 10 familias, entre ellas, Portulacaceae, Asteraceae, Nyctaginaceae, y Cyperaceae. Y en el sistema convencional 11 especies, predominando, Ixophorus unicetus (Presl), Sorghum halepense (L) P ers, Tithonia rotundifolia (Mill) Blake, y 9 familias, sobres alieron Poaceae, Portulacaceae, Asteraceae, y Nyctaginaceae. El porcentaje de cobertura en los dos sistemas de manejo se presento similar. La biomasa por familia, especie y cultivo, fue mayor en el sistema orgánico. El rendimiento del cultivo no reflejo di ferencia significativa entre los dos sistemas de manejo evaluados. Los resultados demostraron que presencia de arvenses no afectó el desarrollo y crecimiento del cultivo. El manejo orgánico puede verse como una alternativa viable para el productor y para l a conservación del ambiente, a pesar de ser este un corto ciclo, este manejo muestra que a futuro se pueden obtenerse mejores resultados

Dinämica poblacional de arvenses en el cultivo de la yuca (Manihot esculenta, Crantz) bajo un sistema convencional y un sistema orgánico

En Nicaragua el cultivo de yuca ( Manihot esculenta Crantz), se siembra tradicionalmente en suelos de baja fertilidad y las arvenses representan el 30% o más del costo de producción. Se evaluó la Dinámica poblacional de arvenses en el cultivo de la yuca, bajo dos sistemas de manejo convencional y orgánico. En la finca El Plantel km 43 1/2 carretera Tipitapa- Masaya, en el 2007 – 2008. Se establecido un diseño no experimental con dos tratamientos: un sistema de manejo convencional el uso de abono completo 12 – 24 – 12 y Urea 46 %- y uno sistema orgánico el uso de lombriz Humus, compost y biofertilizante. En ambos sistemas se encontró una diversidad de 15 especies de arvenses distribuidas en 10 familias. En el Sistema Orgánico predominaron especies de la clase dicotiledóneas, Jalacate Tithonia rotundifolia L. (jalacate), Golondrina ( Boerhravia erecta L) . Desmodium tortuosum (S.W) D.C, (pega pega), Portulaca oleraceae L, (Verdolaga) y las monocotiledoneas, Invasor ( Sorghum halepense (L.)) y Coyolillo ( Cyperus rotundus L), y el Sistema Convencional con menor presencia de especies. En el banco de semilla las clases dicotiledóneas y monocotiledonea, predominan en el sistema orgánico. La biomasa en ambos sistemas, acumularon mayor peso las familias Poaceae, Asteraceae, Cyperaceae y las Papilionaceas. Con relación a peso acumulado por especie, en el sistema orgánico el mayor peso se encontró en, Jalacate ( Tithonia rotundifolia (Mill) Blake), e Invasor ( Sorghum halepense (L) Pers) y en el sistema convencional, Zacate dulce ( Ixophorus unicetus (Persl)) e Invasor ( Sorghum halepense (L) Perl). La cobertura decreció a medida que el cultivo cerraba su ciclo. En los dos sistemas de manejo, el número promedio de raíces por planta, diámetro de raíz y rendimientos promedio de yuca, no presentaron diferencia significativa. Caso contrario con la longitud de la raíz. El sistema de manejo orgánico puede verse como una alternativa viable para el manejo del cultivo de yuca, donde los resultados fueron más satisfactorios

Los museos y el patrimonio histórico militar en la conformación de la identidad nacional

Resumen: El objeto de este trabajo es vincular la actividad de los museos y su patrimonio histórico militar en la conformación de identidades, como parte de un proyecto que se inició hacia fines del siglo XIX. Abordaremos la cuestión desde una visión amplia, incluyendo todos aquellos bienes que por su historia, y la función que ocupan en esa construcción identitaria, guardan estrecha relación con la historia militar. Para tal fin, se tomarán cuatro casos: el Museo Histórico Nacional, el Buque Museo Corbeta Uruguay, la Casa Museo Luis Piedra Buena y la Casa Amarilla (sede del Departamento de Estudios Históricos Navales y del Instituto Nacional Browniano) Todos ellos bienes patrimoniales e instituciones que surgen o se re-significan con el objeto de facilitar a la comunidad nacional e internacional el acceso al conocimiento de la historia del país.

Numerical investigation of thermocapillary migration of the drop for large Marangoni numbers

An axisymmetric model is adopted to simulate the problem of unsteady drop thermocapillary motion for large Marangoni numbers. Front tracking methods are used in the investigation. It is found that the non-dimensional drop migration velocity will decrease with increasing Marangoni number. This agrees well with the experimental results obtained from the 4th Shen-Zhou space ship. In the meanwhile, this is also the first time for numerical simulations to verify the experimental phenomenon under large Marangoni numbers.