Performance comparison of two commercial BGO-based PET/CT scanners using NEMA NU 2-2001.

Combined positron emission tomography and computed tomography (PET/CT) scanners play a major role in medicine for in vivo imaging in an increasing number of diseases in oncology, cardiology, neurology, and psychiatry. With the advent of short-lived radioisotopes other than 18F and newer scanners, there is a need to optimize radioisotope activity and acquisition protocols, as well as to compare scanner performances on an objective basis. The Discovery-LS (D-LS) was among the first clinical PET/CT scanners to be developed and has been extensively characterized with older National Electrical Manufacturer Association (NEMA) NU 2-1994 standards. At the time of publication of the latest version of the standards (NU 2-2001) that have been adapted for whole-body imaging under clinical conditions, more recent models from the same manufacturer, i.e., Discovery-ST (D-ST) and Discovery-STE (D-STE), were commercially available. We report on the full characterization both in the two- and three-dimensional acquisition mode of the D-LS according to latest NEMA NU 2-2001 standards (spatial resolution, sensitivity, count rate performance, accuracy of count losses, and random coincidence correction and image quality), as well as a detailed comparison with the newer D-ST widely used and whose characteristics are already published.

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

MOTIVATION: High-throughput sequencing technologies enable the genome-wide analysis of the impact of genetic variation on molecular phenotypes at unprecedented resolution. However, although powerful, these technologies can also introduce unexpected artifacts. Results: We investigated the impact of library amplification bias on the identification of allele-specific (AS) molecular events from high-throughput sequencing data derived from chromatin immunoprecipitation assays (ChIP-seq). Putative AS DNA binding activity for RNA polymerase II was determined using ChIP-seq data derived from lymphoblastoid cell lines of two parent-daughter trios. We found that, at high-sequencing depth, many significant AS binding sites suffered from an amplification bias, as evidenced by a larger number of clonal reads representing one of the two alleles. To alleviate this bias, we devised an amplification bias detection strategy, which filters out sites with low read complexity and sites featuring a significant excess of clonal reads. This method will be useful for AS analyses involving ChIP-seq and other functional sequencing assays.

A comparison of methods for differential expression analysis of RNA-seq data.

BACKGROUND: Finding genes that are differentially expressed between conditions is an integral part of understanding the molecular basis of phenotypic variation. In the past decades, DNA microarrays have been used extensively to quantify the abundance of mRNA corresponding to different genes, and more recently high-throughput sequencing of cDNA (RNA-seq) has emerged as a powerful competitor. As the cost of sequencing decreases, it is conceivable that the use of RNA-seq for differential expression analysis will increase rapidly. To exploit the possibilities and address the challenges posed by this relatively new type of data, a number of software packages have been developed especially for differential expression analysis of RNA-seq data. RESULTS: We conducted an extensive comparison of eleven methods for differential expression analysis of RNA-seq data. All methods are freely available within the R framework and take as input a matrix of counts, i.e. the number of reads mapping to each genomic feature of interest in each of a number of samples. We evaluate the methods based on both simulated data and real RNA-seq data. CONCLUSIONS: Very small sample sizes, which are still common in RNA-seq experiments, impose problems for all evaluated methods and any results obtained under such conditions should be interpreted with caution. For larger sample sizes, the methods combining a variance-stabilizing transformation with the 'limma' method for differential expression analysis perform well under many different conditions, as does the nonparametric SAMseq method.

Treasurer's Annual Report, June 30, 2001

In accordance with Iowa law, this report submitted to the State Treasury. This report discloses all cash receipts and disbursements for fiscal year and the final balance held in the treasury. In addition, you will find descriptions of various treasury activities. This information is a welcomed the opportunity to share this with you and hope it will help you understand the treasurer’s role in state government.

Una lectura de la Llei 10/2001, de 13 de juliol, d'arxius i documents

S'analitza el procés d'elaboració de la nova Llei d'arxius destacant les principals modificacions que recull el text definitiu en relació al projecte. Es comenten també els punts més destacats de la Llei al voltant de tres eixos principals: la definició del Sistema d'Arxius de Catalunya, el sistema de gestió documental i l'accés als documents del patrimoni documental català.

Kako =to uspje=nije plasirati va=e poslovne talente, December 2001

|elite posao. I osje]ate da negdje, neki poslodavac nudi upravo onakav posao kakav vi \elite -posao na kojem va=e znanje i vje=tine mogu do]i do punog izra\aja, a koji, u isto vrijeme, predstavlja izazov i daje mogu]nost napretka. Da biste ostvarili ovaj korak morate se pripremiti na dobro planiranu potragu za poslom. Imate proizvod koji \elite prodati - va=e znanje, vje=tinu i iskustvo-vas same. Ono =to treba da nau[ite je kako da =to uspje=nije predstavite sebe na tr\i=tu. Neke od informacija datih u ovoj bro=uri mogu vam u tome pomo]i bez obzira da li ste tek zavr=ili =kolu spremni da otpo[nete poslovnu karijeru, ili tra\ite novi posao nakon 20 godina rada. NOTE: BOSNIAN

Kako =to uspje=nije plasirati va=e poslovne talente, December 2001

|elite posao. I osje]ate da negdje, neki poslodavac nudi upravo onakav posao kakav vi \elite -posao na kojem va=e znanje i vje=tine mogu do]i do punog izra\aja, a koji, u isto vrijeme, predstavlja izazov i daje mogu]nost napretka. Da biste ostvarili ovaj korak morate se pripremiti na dobro planiranu potragu za poslom. Imate proizvod koji \elite prodati - va=e znanje, vje=tinu i iskustvo-vas same. Ono =to treba da nau[ite je kako da =to uspje=nije predstavite sebe na tr\i=tu. Neke od informacija datih u ovoj bro=uri mogu vam u tome pomo]i bez obzira da li ste tek zavr=ili =kolu spremni da otpo[nete poslovnu karijeru, ili tra\ite novi posao nakon 20 godina rada. NOTE: BOSNIAN

Ajuntaments a Internet: anàlisi a les comarques de Girona 2001-2006

Anàlisi, avaluació i estat de la qüestió de les pàgines web dels ajuntaments de les comarques de Girona. L'article realitza una anàlisi exhaustiva dels continguts, la gestió i el disseny dels 154 ajuntaments virtuals de la demarcació gironina, a gener de 2006. Partint de la revisió d'un article anterior dels mateixos autors (Ítem, 2001) es traça la comparativa a cinc anys vista i es reflexiona sobre les tendències identificades, així com sobre els reptes de futur.

Informe del V Congreso ISKO-España (Alcalá de Henares, 25¿27 d'abril de 2001)

L'objectiu i el lema central de les aportacions al V Congreso ISKO-España, en paraules del comitè organitzador, va ser l'anàlisi de les metodologies, els models i les aplicacions dels sistemes de representació i organització del coneixement.