Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers.

Genes underlying mutant phenotypes can be isolated by combining marker discovery, genetic mapping and resequencing, but a more straightforward strategy for mapping mutations would be the direct comparison of mutant and wild-type genomes. Applying such an approach, however, is hampered by the need for reference sequences and by mutational loads that confound the unambiguous identification of causal mutations. Here we introduce NIKS (needle in the k-stack), a reference-free algorithm based on comparing k-mers in whole-genome sequencing data for precise discovery of homozygous mutations. We applied NIKS to eight mutants induced in nonreference rice cultivars and to two mutants of the nonmodel species Arabis alpina. In both species, comparing pooled F2 individuals selected for mutant phenotypes revealed small sets of mutations including the causal changes. Moreover, comparing M3 seedlings of two allelic mutants unambiguously identified the causal gene. Thus, for any species amenable to mutagenesis, NIKS enables forward genetics without requiring segregating populations, genetic maps and reference sequences.

Quarterly Report of the Building Project for the Motor Vehicle Division

Pursuant to Section 1 of House File 466 of the 81st General Assembly, the Iowa Department of Transportation is required to make quarterly reports to the Legislative Council regarding the progress of the building project for the Motor Vehicle Division. During the quarter ending June 30, 2007, the project was delayed by two weeks. The Motor Vehicle Division moved into the new Ankeny facility on June 22 and was operational Monday, June 25. The driver's license stations reopened as scheduled Tuesday, June 26, at the Ankeny facility as well as the Oliver Plaza renewal location.

Project AWARE 2006 Iowa River, 2007

This monthly report from the Iowa Department of Transportation is about the water quality management of Iowa's rivers, streams and lakes.

Agreed upon procedures report for evaluating compliance with provisions of IowaCare (Project No 11-W-00189/7) within the Iowa Department of Human Services for the year ended June 30, 2006

Agreed upon procedures report for evaluating compliance with provisions of IowaCare (Project No 11-W-00189/7) within the Iowa Department of Human Services for the year ended June 30, 2006

Project AWARE Scrapbook, 2005

Iowa has nearly 72,000 miles of streams. With one week of camping, miles of paddling, on-going educational opportunities, and hundreds of dedicated and hard-working Iowans, Project AWARE can make a difference – one stretch of river, one week a year, one piece of trash at a time. If it seems like a vacation to the participants…it is. They just learn and improve the river as they go.

Cooperative Lakes Area Monitoring Project-Little Spirit Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Project Overview, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Silver Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Center Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-West Okoboji Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Lower Gar Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Lake Minnewashta, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Upper Gar Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-East Okoboji Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.

Cooperative Lakes Area Monitoring Project-Big Spirit Lake, 2007

Water fact sheet for Iowa Department of Natural Resources and the Geological Bureau.