A linear algebra approach to OLAP

Inspired by the relational algebra of data processing, this paper addresses the foundations of data analytical processing from a linear algebra perspective. The paper investigates, in particular, how aggregation operations such as cross tabulations and data cubes essential to quantitative analysis of data can be expressed solely in terms of matrix multiplication, transposition and the Khatri–Rao variant of the Kronecker product. The approach offers a basis for deriving an algebraic theory of data consolidation, handling the quantitative as well as qualitative sides of data science in a natural, elegant and typed way. It also shows potential for parallel analytical processing, as the parallelization theory of such matrix operations is well acknowledged.

Searching for therapeutic strategies in a mouse modelo of Machado-Joseph disease: targeting proteostases

Tese de Doutoramento em Ciências da Saúde

Influence of chitosan coating on protein-based nanohydrogels properties and in vitro gastric digestibility

Chitosan coating was applied in Lactoferrin (Lf)-Glycomacropeptide (GMP) nanohydrogels by layer-by-layer coating process. A volume ratio of 0.1 of Lf-GMP nanohydrogels (0.2 mg.mL-1, at pH 5.0) to chitosan (1 mg.mL-1, at pH 3) demonstrated to be the optimal condition to obtain stable nanohydrogels with size of 230 ± 12 nm, a PdI of 0.22 ± 0.02 and a -potential of 30.0 ± 0.15 mV. Transmission electron microscopy (TEM) images showed that the application of chitosan coating in Lf-GMP did not affect the spherical shape of nanohydrogels and confirmed the low aggregation of nanohydrogels in solution. The analysis of chemical interactions between chitosan and Lf-GMP nanohydrogels were performed by Fourier transform infrared spectroscopy (FTIR) and by circular dichroism (CD) that revealed that a specific chemical interaction occurring between functional groups of protein-based nanohydrogels and active groups of the chitosan was established. The effect of chitosan coating on release mechanisms of Lf-GMP nanohydrogels at acid conditions (pH 2, 37 ºC) was evaluated by the encapsulation of a model compound (caffeine) in these systems. Linear Superposition Model was used to fit the experimental data and revealed that Fick and relaxation mechanisms are involved in caffeine release. It was also observed that the Fick contribution increase with the application of chitosan coating. In vitro gastric digestion was performed with Lf-GMP nanohydrogels and Lf-GMP nanohydrogels with chitosan coating and it was observed that the presence of chitosan improve the stability of Lf and GMP (proteins were hydrolysed at a slower rate and were present in solution by longer time). Native electrophoreses revealed that the nanohydrogels without coating remained intact in solution until 15 min and with chitosan coating remained intact until 60 min, during gastric digestion.

Production of whey protein-based aggregates under ohmic heating

Formation of whey protein isolate protein aggregates under the influence of moderate electric fields upon ohmic heating (OH) has been monitored through evaluation of molecular protein unfolding, loss of its solubility, and aggregation. To shed more light on the microstructure of the protein aggregates produced by OH, samples were assayed by transmission electron microscopy (TEM). Results show that during early steps of an OH thermal treatment, aggregation of whey proteins can be reduced with a concomitant reduction of the heating chargeby reducing the come-up time (CUT) needed to reach a target temperatureand increase of the electric field applied (from 6 to 12 V cm1). Exposure of reactive free thiol groups involved in molecular unfolding of -lactoglobulin (-lg) can be reduced from 10 to 20 %, when a CUT of 10 s is combined with an electric field of 12 V cm1. Kinetic and multivariate analysis evidenced that the presence of an electric field during heating contributes to a change in the amplitude of aggregation, as well as in the shape of the produced aggregates. TEM discloses the appearance of small fibrillar aggregates upon the influence of OH, which have recognized potential in the functionalization of food protein networks. This study demonstrated that OH technology can be used to tailor denaturation and aggregation behavior of whey proteins due to the presence of a constant electric field together with the ability to provide a very fast heating, thus overcoming heat transfer limitations that naturally occur during conventional thermal treatments.

Novel strategies to combat gram-negative bacterial pathogens using bacteriophage proteins

Dissertação de mestrado em Bioengenharia

Pre-clinical trials for Machado-Joseph Disease: Hypothesis-based and hypothesis-free therapeutic approaches

Tese de Doutoramento em Ciências da Saúde

Socioeconomic aspects of spousal concordance for hypertension, obesity, and smoking in a community of Rio de Janeiro, Brazil

OBJECTIVE: The present study aims to evaluate the environmental role in the distribution of hypertension, obesity, and smoking and spousal concordance for the presence/absence of these 3 cardiovascular risk factors. METHODS: A cross-sectional study was conducted in a community in Rio de Janeiro, Brazil. The households were randomly selected. Odds ratios were estimated to measure spousal concordance, across socioeconomic levels.. RESULTS: Overall a significant aggregation of all 3 risk factors was present. The crude odds ratio for hypertension was 1.78 (95%CI=1.02-3.08); for obesity, it was 1.80 (95%CI=1.09-2.96); and for smoking, it was 3.40 (95% CI=2.07-5.61). The spousal concordance for hypertension decreased significantly (p<0.001) from the lower to the higher educational level. In the case of obesity and smoking, the opposite was observed, although p-values for the linear trend were 0.10 and 0.08, respectively. CONCLUSION: In lower socioeconomic levels, couples are more concordant for hypertension and discordant for smoking. For hypertension and smoking, education seems to be a discriminant stronger than income, but for obesity the 2 socioeconomic indicators seem to represent different aspects of the environmental determinants of risk factor distribution.

Behavior of inflammatory markers of myocardial injury in cardiac surgery: laboratory correlation with the clinical picture of postpericardiotomy syndrome

OBJECTIVE: To verify the association of serum markers of myocardial injury, such as troponin I, creatinine kinase, and creatinine kinase isoenzyme MB, and inflammatory markers, such as tumor necrosis factor alpha (TNF-alpha), C-reactive protein, and the erythrocyte sedimentation rate in the perioperative period of cardiac surgery, with the occurrence of possible postpericardiotomy syndrome. METHODS: This was a cohort study with 96 patients undergoing cardiac surgery assessed at the following 4 different time periods: the day before surgery (D0); the 3rd postoperative day (D3); between the 7th and 10th postoperative days (D7-10); and the 30th postoperative day (D30). During each period, we evaluated demographic variables (sex and age), surgical variables (type and duration , extracorporeal circulation), and serum dosages of the markers of myocardial injury and inflammatory response. RESULTS: Of all patients, 12 (12.5%) met the clinical criteria for a diagnosis of postpericardiotomy syndrome, and their mean age was 10.3 years lower than the age of the others (P=0.02). The results of the serum markers for tissue injury and inflammatory response were not significantly different between the 2 assessed groups. No significant difference existed regarding either surgery duration or extracorporeal circulation. CONCLUSION: The patients who met the clinical criteria for postpericardiotomy syndrome were significantly younger than the others were. Serum markers for tissue injury and inflammatory response were not different in the clinically affected group, and did not correlate with the different types and duration of surgery or with extracorporeal circulation.

Dinámica poblacional de Streptococcus mutans en niños de edad escolar de la provincia de Córdoba. Population dynamics of Streptococcus mutans in school age children in the province of Córdoba

La caries dental es una enfermedad infecciosa, crónica y trasmisible, que se caracteriza por la desmineralización de los tejidos duros del diente, producida por la acción de los ácidos resultantes de la actividad metabólica del biofilm desarrollado sobre los dientes. Si bien, la etiología de la caries sería polimicrobiana, los estreptococos del grupo mutans son señalados como los principales protagonistas en el inicio de la lesión cariosa. En la pared celular se destacan proteínas que participan en procesos de adhesión, agregación y co-agregación, además de polisacáridos que muestran distintas especificidades antigénicas, lo que permite distinguir cuatro serotipos: c, e, f y k. Es escasa la información de las características antigénicas de las cepas circulantes de estreptococos del grupo mutans y se desconoce la relación de las mismas con la actividad de caries. En este estudio nuestros objetivos son identificar y caracterizar fenotípica y genotípicamente las cepas de estreptococos del grupo mutans circulantes en la provincia de Córdoba. La población de estudio estará constituida por escolares, urbano–marginales de la capital y del interior de la provincia. Se determinarán los serotipos de las mismas a través de de amplificaciones por PCR de tipo multiplex y luego se secuenciarán 8 genes a través de la técnica de tipado multilocus, con el fin de realizar estudios de sistemática molecular, y de estimar la estructura genética de S. mutans. Una vez que se hayan caracterizado los patrones de diversidad y distribución geográfica de S. mutans del centro de Argentina, se intentará dilucidar cómo se relacionan la diversidad genética con la experiencia de caries de los niños del estudio. Se analizarán de forma conjunta nuestros resultados con los publicados por otros autores. De esta forma se logrará una mejor comprensión de los factores históricos y ecológicos que han moldeado su distribución y aportar conocimientos a la sistemática del grupo “mutans” en relación a otras bacterias del género Streptococcus. Dental caries is an infectious, chronic and transmissible disease, characterized by demineralization of the hard tissues of the teeth, produced by the action of acids resulting from the metabolic activity of biofilm developed on the teeth. Although the etiology of caries would be polymicrobial, the streptococci of the mutans group are identified as the major responsible in the initiation of the carious lesion. In the cell wall there are proteins involved in adhesion, aggregation and co-aggregation processes, as well as polysaccharides that present different antigenic specificities, which allow the distinction of four serotypes c, e, f and k. There is little information about the antigenic characteristics of the Streptococcus mutans strains and the relationship of those characteristics with the caries activity is unknown. In the present study our goals are to identify and characterize the phenotypic and genotypic strains of streptococci of the mutans group circulating in the province of Cordoba. The study population will consist of urban and rural scholar children from Cordoba city and from the interior of the province. In order to study the molecular systematic, and the genetic structure of S. mutans, different serotypes will be determined by multiplex PCR amplifications and eight genes will be sequenced by using the multilocus typing technique. Once the diversity and the geographical distribution patterns of S. mutans from the center of Argentina is characterized, we will attempt to clarify how the genetic diversity is related with the caries experience in the children of the study. Our results will be analyzed together with those published by other authors. This will achieve a better understanding of the historical and ecological factors that shaped the bacteria’s distribution and will contribute to the knowledge of the systematic of the mutans group in relation to other bacteria of the genus Streptococcus.

Hemorheological and Glycemic Parameters and HDL Cholesterol for the Prediction of Cardiovascular Events

Abstract Background: Hemorheological and glycemic parameters and high density lipoprotein (HDL) cholesterol are used as biomarkers of atherosclerosis and thrombosis. Objective: To investigate the association and clinical relevance of erythrocyte sedimentation rate (ESR), fibrinogen, fasting glucose, glycated hemoglobin (HbA1c), and HDL cholesterol in the prediction of major adverse cardiovascular events (MACE) and coronary heart disease (CHD) in an outpatient population. Methods: 708 stable patients who visited the outpatient department were enrolled and followed for a mean period of 28.5 months. Patients were divided into two groups, patients without MACE and patients with MACE, which included cardiac death, acute myocardial infarction, newly diagnosed CHD, and cerebral vascular accident. We compared hemorheological and glycemic parameters and lipid profiles between the groups. Results: Patients with MACE had significantly higher ESR, fibrinogen, fasting glucose, and HbA1c, while lower HDL cholesterol compared with patients without MACE. High ESR and fibrinogen and low HDL cholesterol significantly increased the risk of MACE in multivariate regression analysis. In patients with MACE, high fibrinogen and HbA1c levels increased the risk of multivessel CHD. Furthermore, ESR and fibrinogen were significantly positively correlated with HbA1c and negatively correlated with HDL cholesterol, however not correlated with fasting glucose. Conclusion: Hemorheological abnormalities, poor glycemic control, and low HDL cholesterol are correlated with each other and could serve as simple and useful surrogate markers and predictors for MACE and CHD in outpatients.

When is the Best Time for the Second Antiplatelet Agent in Non-St Elevation Acute Coronary Syndrome?

Abstract Dual antiplatelet therapy is a well-established treatment in patients with non-ST elevation acute coronary syndrome (NSTE-ACS), with class I of recommendation (level of evidence A) in current national and international guidelines. Nonetheless, these guidelines are not precise or consensual regarding the best time to start the second antiplatelet agent. The evidences are conflicting, and after more than a decade using clopidogrel in this scenario, benefits from the routine pretreatment, i.e. without knowing the coronary anatomy, with dual antiplatelet therapy remain uncertain. The recommendation for the upfront treatment with clopidogrel in NSTE-ACS is based on the reduction of non-fatal events in studies that used the conservative strategy with eventual invasive stratification, after many days of the acute event. This approach is different from the current management of these patients, considering the established benefits from the early invasive strategy, especially in moderate to high-risk patients. The only randomized study to date that specifically tested the pretreatment in NSTE-ACS in the context of early invasive strategy, used prasugrel, and it did not show any benefit in reducing ischemic events with pretreatment. On the contrary, its administration increased the risk of bleeding events. This study has brought the pretreatment again into discussion, and led to changes in recent guidelines of the American and European cardiology societies. In this paper, the authors review the main evidence of the pretreatment with dual antiplatelet therapy in NSTE-ACS.

Untersuchung des humanen Proteins NF110 als Bindungspartner viraler RNAs

In der vorliegenden Masterarbeit wurde das Protein nuclear factor 110 (NF110) in vitro rückgefaltet, chromatographisch gereinigt, durch den Zusatz von L-Arginin stabilisiert und seine Affinität gegenüber RNAs untersucht. Das Ausgangsmaterial wurde mittels Dialyse zurückgefaltet und über drei aufeinander folgende Chromatographieschritte gereinigt: mittels Kationenaustauschchromatographie (capture) zur Entfernung von Fremdproteinen, Größenausschlusschromatographie (intermediate) zur Trennung des monomeren Proteins von höher-oligomeren Spezies und der Affinitätschromatographie (polishing). Diese Proteinlösung wurde unter Zusatz von 500 mM L-Arginin gelagert um eine Proteinaggregation zu unterbinden. Durch Streulichtmessungen und eine analytische Ultrazentrifugation konnte erfolgreich nachgewiesen werden, dass NF110 erst in Puffern mit mindestens 200 mM L-Arginin stabil vorliegt. Im Rahmen der vorliegenden Arbeit konnte erfolgreich bestimmt werden, dass NF110 zwischen doppelsträngiger RNA und DNA diskriminiert, während es gegenüber einzel- bzw. doppelsträngiger RNA ähnlich affin ist. Dies stellt einen großen Unterschied zu NF90 dar. Diese C-terminal verkürzte Variante interagiert mit einzelsträngiger RNA in sehr geringerem Umfang als mit doppelsträngiger RNA (Schmidt, 2015). Daher kann vermutet werden, dass der C-Terminus, insbesondere das dort befindliche GQSY-Motiv, für die Spezifität gegenüber den RNAs verantwortlich ist. Ein weiterer Fokus der Arbeit lag auf dem Einfluss von L-Arginin bei der RNA-Bindung. Mit Hilfe einer linearen freien Enthalpiebeziehung (LFER) konnte so eine Dissoziationskonstante für nicht aggregierendes NF110 ohne L-Arginin ermittelt werden. Außerdem wurde ersichtlich, dass dieser Stabilisator zwar die Aggregation hemmt, aber nur marginal die RNA-Bindung des Proteins beeinflusst

Atividade reprodutiva de Physalaemus signifer (Anura, Leptodactylidae) em ambiente temporário

The breeding activity of Physalaemus signifer (Girard, 1853) was monitored from July 1999 to July 2000 in a temporary pond in Palmital, Municipality of Saquarema, State of Rio de Janeiro, Atlantic Rain Forest, Brazil. Males were sexually actives only in four nights, arriving at the pond on the early rainy season. Males in amplexus were larger and spent more nights in the reproductive aggregation than solitary ones. The number of nights was correlated with the mass of the males. Males adopted satellite behavior as alternative tactic for mate acquisition. Changes between calling and satellite tactics were observed in different nights. Calling males were not larger and heavier than satellite ones. Satellite behavior seemed to be related with the order of arrival on the pond. Size and mass of males did not influence the results of fights. Resident males won the majority of agonistics combats. Three types of vocalizations are described: advertisement, territorial, and encounter calls.

Oviposition behavior of Zabrotes subfasciatus females (Coleoptera, Bruchidae) under conditions of host deprivation

Oviposition of Zabrotes subfasciatus (Boheman, 1833) on Phaseolus vulgaris (Linnaeus, 1753) was studied immediately after emergence of the adults throughout the females life and in situations of host deprivation lasting for 1 to 10 days. The number of eggs laid daily, longevity, duration of oviposition and distribution of eggs per grain were studied. The number of eggs laid per day varied significantly, with the oviposition peak in the presence of the host (control group) occurring between day 2 and day 5 of oviposition. In the absence of the host, a shift in the oviposition peak to the first day after deprivation was observed, except for the group deprived for one day which showed a peak between days 1 and 4 after introduction of the host. The distribution of the eggs per grain in the control group and in the groups deprived of the host for 2, 5, 8 and 10 days, a larger egg aggregation was observed for all deprived groups compared to the control group.

Firm Size and Short-Term Dynamics in Aggregate Entry and Exit

Much of the research on industry dynamics focuses on the interdependence between the sectorial rates of entry and exit. This paper argues that the size of firms and the reaction-adjustment period are important conditions missed in this literature. I illustrate the effects of this omission using data from the Spanish manufacturing industries between 1994 and 2001. Estimates from systems of equations models provide evidence of a conical revolving door phenomenon and of partial adjustments in the replacement-displacement of large firms. KEYWORDS: aggregation, industry dynamics, panel data, symmetry, simultaneity. JEL CLASSIFICATION: C33, C52, L60, L11