VIRTOPSY--scientific documentation, reconstruction and animation in forensic: individual and real 3D data based geo-metric approach including optical body/object surface and radiological CT/MRI scanning.

Until today, most of the documentation of forensic relevant medical findings is limited to traditional 2D photography, 2D conventional radiographs, sketches and verbal description. There are still some limitations of the classic documentation in forensic science especially if a 3D documentation is necessary. The goal of this paper is to demonstrate new 3D real data based geo-metric technology approaches. This paper present approaches to a 3D geo-metric documentation of injuries on the body surface and internal injuries in the living and deceased cases. Using modern imaging methods such as photogrammetry, optical surface and radiological CT/MRI scanning in combination it could be demonstrated that a real, full 3D data based individual documentation of the body surface and internal structures is possible in a non-invasive and non-destructive manner. Using the data merging/fusing and animation possibilities, it is possible to answer reconstructive questions of the dynamic development of patterned injuries (morphologic imprints) and to evaluate the possibility, that they are matchable or linkable to suspected injury-causing instruments. For the first time, to our knowledge, the method of optical and radiological 3D scanning was used to document the forensic relevant injuries of human body in combination with vehicle damages. By this complementary documentation approach, individual forensic real data based analysis and animation were possible linking body injuries to vehicle deformations or damages. These data allow conclusions to be drawn for automobile accident research, optimization of vehicle safety (pedestrian and passenger) and for further development of crash dummies. Real 3D data based documentation opens a new horizon for scientific reconstruction and animation by bringing added value and a real quality improvement in forensic science.

Ventilation/perfusion SPECT/CT in patients with pulmonary emphysema. Evaluation of software-based analysing

UNLABELLED The purpose of this study was to evaluate the reproducibility of a new software based analysing system for ventilation/perfusion single-photon emission computed tomography/computed tomography (V/P SPECT/CT) in patients with pulmonary emphysema and to compare it to the visual interpretation. PATIENTS, MATERIAL AND METHODS 19 patients (mean age: 68.1 years) with pulmonary emphysema who underwent V/P SPECT/CT were included. Data were analysed by two independent observers in visual interpretation (VI) and by software based analysis system (SBAS). SBAS PMOD version 3.4 (Technologies Ltd, Zurich, Switzerland) was used to assess counts and volume per lung lobe/per lung and to calculate the count density per lung, lobe ratio of counts and ratio of count density. VI was performed using a visual scale to assess the mean counts per lung lobe. Interobserver variability and association for SBAS and VI were analysed using Spearman's rho correlation coefficient. RESULTS Interobserver agreement correlated highly in perfusion (rho: 0.982, 0.957, 0.90, 0.979) and ventilation (rho: 0.972, 0.924, 0.941, 0.936) for count/count density per lobe and ratio of counts/count density in SBAS. Interobserver agreement correlated clearly for perfusion (rho: 0.655) and weakly for ventilation (rho: 0.458) in VI. CONCLUSIONS SBAS provides more reproducible measures than VI for the relative tracer uptake in V/P SPECT/CTs in patients with pulmonary emphysema. However, SBAS has to be improved for routine clinical use.

Car, parce que, puisque’ revisited: Three empirical studies on French causal connectives

In French, a causal relation is often conveyed by the connectives car, parce que or puisque. Since the seminal work of the Lambda-l Group (1975), it has generally been assumed that parce que, used to relate semantic content, contrasts with car and puisque, both used to connect either speech act or epistemic content. However, this analysis leaves a number of questions unanswered. In this paper, I present a reanalysis of this trio, using empirical methods such as corpus analysis and constrained elicitation. Results indicate that car and parce que are interchangeable in many contexts, even if they are still prototypically used in their respective domain in writing. As for puisque, its distribution does not overlap with car, despite their similar domains of use. I argue that the specificity of puisque with respect to the other two connectives is to introduce a cause with an echoic meaning.

Network-based genome-wide association study of Crohn's disease

Genome-wide association studies (GWAS) have rapidly become a standard method for disease gene discovery. Many recent GWAS indicate that for most disorders, only a few common variants are implicated and the associated SNPs explain only a small fraction of the genetic risk. The current study incorporated gene network information into gene-based analysis of GWAS data for Crohn's disease (CD). The purpose was to develop statistical models to boost the power of identifying disease-associated genes and gene subnetworks by maximizing the use of existing biological knowledge from multiple sources. The results revealed that Markov random field (MRF) based mixture model incorporating direct neighborhood information from a single gene network is not efficient in identifying CD-related genes based on the GWAS data. The incorporation of solely direct neighborhood information might lead to the low efficiency of these models. Alternative MRF models looking beyond direct neighboring information are necessary to be developed in the future for the purpose of this study.^

Gene-gene interaction and gene-pathway analysis of genome-wide association for schizophrenia

Schizophrenia (SZ) is a complex disorder with high heritability and variable phenotypes that has limited success in finding causal genes associated with the disease development. Pathway-based analysis is an effective approach in investigating the molecular mechanism of susceptible genes associated with complex diseases. The etiology of complex diseases could be a network of genetic factors and within the genes, interaction may occur. In this work we argue that some genes might be of small effect that by itself are neither sufficient nor necessary to cause the disease however, their effect may induce slight changes to the gene expression or affect the protein function, therefore, analyzing the gene-gene interaction mechanism within the disease pathway would play crucial role in dissecting the genetic architecture of complex diseases, making the pathway-based analysis a complementary approach to GWAS technique. ^ In this study, we implemented three novel linkage disequilibrium based statistics, the linear combination, the quadratic, and the decorrelation test statistics, to investigate the interaction between linked and unlinked genes in two independent case-control GWAS datasets for SZ including participants of European (EA) and African (AA) ancestries. The EA population included 1,173 cases and 1,378 controls with 729,454 genotyped SNPs, while the AA population included 219 cases and 288 controls with 845,814 genotyped SNPs. We identified 17,186 interacting gene-sets at significant level in EA dataset, and 12,691 gene-sets in AA dataset using the gene-gene interaction method. We also identified 18,846 genes in EA dataset and 19,431 genes in AA dataset that were in the disease pathways. However, few genes were reported of significant association to SZ. ^ Our research determined the pathways characteristics for schizophrenia through the gene-gene interaction and gene-pathway based approaches. Our findings suggest insightful inferences of our methods in studying the molecular mechanisms of common complex diseases.^

Calcareous dinoflagellate cycst in the mid-Cenomanian Boreal realm

A transect from the bathyal to proximal shelf facies of the Boreal Realm was investigated to compare spatial and temporal distribution changes of calcareous dinoflagellate cysts (c-dinocysts) throughout the mid-Cenomanian in order to gain information on the ecology of these organisms. Pithonelloideae dominated the cyst assemblages to more than 95% on the shelf, a prevalence that can be observed throughout most of the Upper Cretaceous. The affinity of this group with the dinoflagellates, which is still controversially discussed, can be confirmed, based on evidence from morphological features and distribution patterns. The consistent prevalence of Pithonella sphaerica and P. ovalis in c-dinocyst assemblages throughout the Upper Cretaceous indicates that they were produced more frequently than cysts of the other species and might, therefore, represent a vegetative dinoflagellate life stage. P. sphaerica and P. ovalis are interpreted as eutrophic species. P. sphaerica is the main species in a marginal-shelf upwelling area, offshore Fennoscandia. Here, sedimentary cyclicity appears to have been reduced to the strongest light/dark changes, while in the outer shelf sediments, light/dark cycles are well-developed and show pronounced temporal assemblage changes. Cyclic fluctuations in the P. sphaerica / P. ovalis ratio reflect shifts of the preferred facies zones and indicate changes in surface mixing patterns. During periods of enhanced surface mixing most parts of the shelf were well-ventilated, and nutrient-enriched surface waters led to high productivity and dominance of the Pithonelloideae. These conditions on the shelf contrasted with those in the open ocean, where more oligotrophic and probably stratified waters prevailed, and an assemblage with very few Pithonelloideae and dominance of Cubodinellum renei and Orthopithonella ? gustafsonii was characteristic. While orbitally-forced light/dark sedimentary cyclicity of the shelf sections was mainly related to surface-water carbonate productivity changes, no cyclic modulation of productivity was observed in the oceanic profile. Therefore, dark layer formation in the open ocean was predominantly controlled by the cyclic establishment of anoxic bottom water conditions. Orbitally-forced interruptions in mixing on the shelf resulted in cyclic periods of stratification and oligotrophy in the surface waters, an expansion of oceanic species to the outer shelf, and a shelfward shift of pithonelloid-facies zones, which were probably related to shelfward directed oceanic ingressions.

Segmentación de Secuencias de Vídeo: análisis y desarrollo de estrategias para la detección de cambios de toma y para la detección de objetos móviles

The important technological advances experienced along the last years have resulted in an important demand for new and efficient computer vision applications. On the one hand, the increasing use of video editing software has given rise to a necessity for faster and more efficient editing tools that, in a first step, perform a temporal segmentation in shots. On the other hand, the number of electronic devices with integrated cameras has grown enormously. These devices require new, fast, and efficient computer vision applications that include moving object detection strategies. In this dissertation, we propose a temporal segmentation strategy and several moving object detection strategies, which are suitable for the last generation of computer vision applications requiring both low computational cost and high quality results. First, a novel real-time high-quality shot detection strategy is proposed. While abrupt transitions are detected through a very fast pixel-based analysis, gradual transitions are obtained from an efficient edge-based analysis. Both analyses are reinforced with a motion analysis that allows to detect and discard false detections. This analysis is carried out exclusively over a reduced amount of candidate transitions, thus maintaining the computational requirements. On the other hand, a moving object detection strategy, which is based on the popular Mixture of Gaussians method, is proposed. This strategy, taking into account the recent history of each image pixel, adapts dynamically the amount of Gaussians that are required to model its variations. As a result, we improve significantly the computational efficiency with respect to other similar methods and, additionally, we reduce the influence of the used parameters in the results. Alternatively, in order to improve the quality of the results in complex scenarios containing dynamic backgrounds, we propose different non-parametric based moving object detection strategies that model both background and foreground. To obtain high quality results regardless of the characteristics of the analyzed sequence we dynamically estimate the most adequate bandwidth matrices for the kernels that are used in the background and foreground modeling. Moreover, the application of a particle filter allows to update the spatial information and provides a priori knowledge about the areas to analyze in the following images, enabling an important reduction in the computational requirements and improving the segmentation results. Additionally, we propose the use of an innovative combination of chromaticity and gradients that allows to reduce the influence of shadows and reflects in the detections.

Flujo de potencia entre estructuras complejas sometidas a excitaciones de alta frecuencia y aplicaciones a la detección de daño estructural

El tema central de investigación en esta Tesis es el estudio del comportamientodinámico de una estructura mediante modelos que describen la distribución deenergía entre los componentes de la misma y la aplicación de estos modelos parala detección de daños incipientes.Los ensayos dinámicos son un modo de extraer información sobre las propiedadesde una estructura. Si tenemos un modelo de la estructura se podría ajustar éstepara que, con determinado grado de precisión, tenga la misma respuesta que elsistema real ensayado. Después de que se produjese un daño en la estructura,la respuesta al mismo ensayo variará en cierta medida; actualizando el modelo alas nuevas condiciones podemos detectar cambios en la configuración del modeloestructural que nos condujeran a la conclusión de que en la estructura se haproducido un daño.De este modo, la detección de un daño incipiente es posible si somos capacesde distinguir una pequeña variación en los parámetros que definen el modelo. Unrégimen muy apropiado para realizar este tipo de detección es a altas frecuencias,ya que la respuesta es muy dependiente de los pequeños detalles geométricos,dado que el tamaño característico en la estructura asociado a la respuesta esdirectamente proporcional a la velocidad de propagación de las ondas acústicas enel sólido, que para una estructura dada es inalterable, e inversamente proporcionala la frecuencia de la excitación. Al mismo tiempo, esta característica de la respuestaa altas frecuencias hace que un modelo de Elementos Finitos no sea aplicable enla práctica, debido al alto coste computacional.Un modelo ampliamente utilizado en el cálculo de la respuesta de estructurasa altas frecuencias en ingeniería es el SEA (Statistical Energy Analysis). El SEAaplica el balance energético a cada componente estructural, relacionando la energíade vibración de estos con la potencia disipada por cada uno de ellos y la potenciatransmitida entre ellos, cuya suma debe ser igual a la potencia inyectada a cadacomponente estructural. Esta relación es lineal y viene caracterizada por los factoresde pérdidas. Las magnitudes que intervienen en la respuesta se consideranpromediadas en la geometría, la frecuencia y el tiempo.Actualizar el modelo SEA a datos de ensayo es, por lo tanto, calcular losfactores de pérdidas que reproduzcan la respuesta obtenida en éste. Esta actualización,si se hace de manera directa, supone la resolución de un problema inversoque tiene la característica de estar mal condicionado. En la Tesis se propone actualizarel modelo SEA, no en término de los factores de pérdidas, sino en términos deparámetros estructurales que tienen sentido físico cuando se trata de la respuestaa altas frecuencias, como son los factores de disipación de cada componente, susdensidades modales y las rigideces características de los elementos de acoplamiento.Los factores de pérdidas se calculan como función de estos parámetros. Estaformulación es desarrollada de manera original en esta Tesis y principalmente sefunda en la hipótesis de alta densidad modal, es decir, que en la respuesta participanun gran número de modos de cada componente estructural.La teoría general del método SEA, establece que el modelo es válido bajounas hipótesis sobre la naturaleza de las excitaciones externas muy restrictivas,como que éstas deben ser de tipo ruido blanco local. Este tipo de carga es difícil dereproducir en condiciones de ensayo. En la Tesis mostramos con casos prácticos queesta restricción se puede relajar y, en particular, los resultados son suficientementebuenos cuando la estructura se somete a una carga armónica en escalón.Bajo estas aproximaciones se desarrolla un algoritmo de optimización por pasosque permite actualizar un modelo SEA a un ensayo transitorio cuando la carga esde tipo armónica en escalón. Este algoritmo actualiza el modelo no solamente parauna banda de frecuencia en particular sino para diversas bandas de frecuencia demanera simultánea, con el objetivo de plantear un problema mejor condicionado.Por último, se define un índice de daño que mide el cambio en la matriz depérdidas cuando se produce un daño estructural en una localización concreta deun componente. Se simula numéricamente la respuesta de una estructura formadapor vigas donde producimos un daño en la sección de una de ellas; como se tratade un cálculo a altas frecuencias, la simulación se hace mediante el Método delos Elementos Espectrales para lo que ha sido necesario desarrollar dentro de laTesis un elemento espectral de tipo viga dañada en una sección determinada. Losresultados obtenidos permiten localizar el componente estructural en que se haproducido el daño y la sección en que éste se encuentra con determinado grado deconfianza.AbstractThe main subject under research in this Thesis is the study of the dynamic behaviourof a structure using models that describe the energy distribution betweenthe components of the structure and the applicability of these models to incipientdamage detection.Dynamic tests are a way to extract information about the properties of astructure. If we have a model of the structure, it can be updated in order toreproduce the same response as in experimental tests, within a certain degree ofaccuracy. After damage occurs, the response will change to some extent; modelupdating to the new test conditions can help to detect changes in the structuralmodel leading to the conclusión that damage has occurred.In this way incipient damage detection is possible if we are able to detect srnallvariations in the model parameters. It turns out that the high frequency regimeis highly relevant for incipient damage detection, because the response is verysensitive to small structural geometric details. The characteristic length associatedwith the response is proportional to the propagation speed of acoustic waves insidethe solid, but inversely proportional to the excitation frequency. At the same time,this fact makes the application of a Finite Element Method impractical due to thehigh computational cost.A widely used model in engineering when dealing with the high frequencyresponse is SEA (Statistical Energy Analysis). SEA applies the energy balance toeach structural component, relating their vibrational energy with the dissipatedpower and the transmitted power between the different components; their summust be equal to the input power to each of them. This relationship is linear andcharacterized by loss factors. The magnitudes considered in the response shouldbe averaged in geometry, frequency and time.SEA model updating to test data is equivalent to calculating the loss factorsthat provide a better fit to the experimental response. This is formulated as an illconditionedinverse problem. In this Thesis a new updating algorithm is proposedfor the study of the high frequency response regime in terms of parameters withphysical meaning such as the internal dissipation factors, modal densities andcharacteristic coupling stiffness. The loss factors are then calculated from theseparameters. The approach is developed entirely in this Thesis and is mainlybased on a high modal density asumption, that is to say, a large number of modescontributes to the response.General SEA theory establishes the validity of the model under the asumptionof very restrictive external excitations. These should behave as a local white noise.This kind of excitation is difficult to reproduce in an experimental environment.In this Thesis we show that in practical cases this assumption can be relaxed, inparticular, results are good enough when the structure is excited with a harmonicstep function.Under these assumptions an optimization algorithm is developed for SEAmodel updating to a transient test when external loads are harmonic step functions.This algorithm considers the response not only in a single frequency band,but also for several of them simultaneously.A damage index is defined that measures the change in the loss factor matrixwhen a damage has occurred at a certain location in the structure. The structuresconsidered in this study are built with damaged beam elements; as we are dealingwith the high frequency response, the numerical simulation is implemented witha Spectral Element Method. It has therefore been necessary to develop a spectralbeam damaged element as well. The reported results show that damage detectionis possible with this algorithm, moreover, damage location is also possible withina certain degree of accuracy.

FMECA application to Rainfall Hazard prevention

This paper presents a System Safety application to reduce the economical impact hazards in growings produced by Rainfall. System Safety is an engineering subdiscipline oriented to identify and mitigate the possible hazards to a system under study. Inside the System Safety area, the FMECA (Failure Mode, Effects and Criticallity Analysis) is a popular tool to analyze and identify the failures and weaknesses points of any system. Basically, it consist on identifying systematically the failure modes of a system to mitigate them as much as possible. The idea is to study three different kind of growings (stone fruits in the south of Spain, wheat production in Castilla Leon and Olive trees production in Andalucia) using this methodology in order to identify all the hazardous situations produced by rainfall. Applying the state of the art weather forecast techniques, this information would help farmers to prevent and mitigate the identified hazardous situations. The aim of the work is to prevent the economical hazards as are defined in the System Safety area: "Any real or potential condition that can cause injury, illness, or death to personnel; damage to or loss of a system, equipment or property; or damage to the environment", so the study is not reduced to the analysis of catastrophical situations but aboutany kind of economical damage produced by rainfall.

DAEDALUS at ImageCLEF 2011 Plant Identification Task: Using SIFT Keypoints for Object Detection

This paper describes the participation of DAEDALUS at ImageCLEF 2011 Plant Identification task. The task is evaluated as a supervised classification problem over 71 tree species from the French Mediterranean area used as class labels, based on visual content from scan, scan-like and natural photo images. Our approach to this task is to build a classifier based on the detection of keypoints from the images extracted using Lowe’s Scale Invariant Feature Transform (SIFT) algorithm. Although our overall classification score is very low as compared to other participant groups, the main conclusion that can be drawn is that SIFT keypoints seem to work significantly better for photos than for the other image types, so our approach may be a feasible strategy for the classification of this kind of visual content.

Four Decades of Studying Global Linear Instability: Progress and Challenges

Global linear instability theory is concerned with the temporal or spatial development of small-amplitude perturbations superposed upon laminar steady or time-periodic three-dimensional flows, which are inhomogeneous in two(and periodic in one)or all three spatial directions.After a brief exposition of the theory,some recent advances are reported. First, results are presented on the implementation of a Jacobian-free Newton–Krylov time-stepping method into a standard finite-volume aerodynamic code to obtain global linear instability results in flows of industrial interest. Second, connections are sought between established and more-modern approaches for structure identification in flows, such as proper orthogonal decomposition and Koopman modes analysis (dynamic mode decomposition), and the possibility to connect solutions of the eigenvalue problem obtained by matrix formation or time-stepping with those delivered by dynamic mode decomposition, residual algorithm, and proper orthogonal decomposition analysis is highlighted in the laminar regime; turbulent and three-dimensional flows are identified as open areas for future research. Finally, a new stable very-high-order finite-difference method is implemented for the spatial discretization of the operators describing the spatial biglobal eigenvalue problem, parabolized stability equation three-dimensional analysis, and the triglobal eigenvalue problem; it is shown that, combined with sparse matrix treatment, all these problems may now be solved on standard desktop computers

Pulse shortening of gain switched single mode semiconductor lasers using a variable delay interferometer

We propose a pulse shaping and shortening technique for pulses generated from gain switched single mode semiconductor lasers, based on a Mach Zehnder interferometer with variable delay. The spectral and temporal characteristics of the pulses obtained with the proposed technique are investigated with numerical simulations. Experiments are performed with a Distributed Feedback laser and a Vertical Cavity Surface Emitting Laser, emitting at 1.5 µm, obtaining pulse duration reduction of 25-30%. The main asset of the proposed technique is that it can be applied to different devices and pulses, taking advantage of the flexibility of the gain switching technique.

Structural health monitoring network system with wireless communications inside closed aerospace structures

Structural Health Monitoring (SHM) requires integrated "all in one" electronic devices capable of performing analysis of structural integrity and on-board damage detection in aircraft?s structures. PAMELA III (Phased Array Monitoring for Enhanced Life Assessment, version III) SHM embedded system is an example of this device type. This equipment is capable of generating excitation signals to be applied to an array of integrated piezoelectric Phased Array (PhA) transducers stuck to aircraft structure, acquiring the response signals, and carrying out the advanced signal processing to obtain SHM maps. PAMELA III is connected with a host computer in order to receive the configuration parameters and sending the obtained SHM maps, alarms and so on. This host can communicate with PAMELA III through an Ethernet interface. To avoid the use of wires where necessary, it is possible to add Wi-Fi capabilities to PAMELA III, connecting a Wi-Fi node working as a bridge, and to establish a wireless communication between PAMELA III and the host. However, in a real aircraft scenario, several PAMELA III devices must work together inside closed structures. In this situation, it is not possible for all PAMELA III devices to establish a wireless communication directly with the host, due to the signal attenuation caused by the different obstacles of the aircraft structure. To provide communication among all PAMELA III devices and the host, a wireless mesh network (WMN) system has been implemented inside a closed aluminum wingbox. In a WMN, as long as a node is connected to at least one other node, it will have full connectivity to the entire network because each mesh node forwards packets to other nodes in the network as required. Mesh protocols automatically determine the best route through the network and can dynamically reconfigure the network if a link drops out. The advantages and disadvantages on the use of a wireless mesh network system inside closed aerospace structures are discussed.

Integrated electronic system for ultrasonic structural health monitoring

A fully integrated on-board electronic system that can perform in-situ structural health monitoring (SHM) of aircraft?s structures using specifically designed equipment for SHM based on guided wave ultrasonic method or Lamb waves? method is introduced. This equipment is called Phased Array Monitoring for Enhanced Life Assessment (PAMELA III) and is an essential part of overall PAMELA SHM? system. PAMELA III can generate any kind of excitation signals, acquire the response signals that propagate throughout the structure being tested, and perform the signal processing for damage detection directly on the structure without need to send the huge amount of raw signals but only the final SHM maps. It monitors the structure by means of an array of integrated Phased Array (PhA) transducers preferably bonded onto the host structure. The PAMELA III hardware for SHM mapping has been designed, built and subjected to laboratory tests, using aluminum and CFRP structures. The 12 channel system has been designed to be low weight (265 grams only), to have a small form factor, to be directly mounted above the integrated PhA transducers without need for cables and to be EMI protected so that the equipment can be taken on board an aircraft to perform required SHM analyses by use of embedded SHM algorithms. Moreover, the autonomous, automatic and on real-time working procedure makes it suitable for the avionic field, sending the corresponding alerts, maps and reports to external equipment.

A new ultrasonic signal amplification method for detection bacteria

A new method is presented that increases the sensitivity of ultrasound-based techniques for detection of bacteria. The technique was developed for the detection of catalase-positive microorganisms. It uses a bubble trapping medium containing hydrogen peroxide that is mixed with the sample for microbiological evaluation. The enzyme catalase is present in catalase-positive bacteria, which induces a rapid hydrolysis of hydrogen peroxide, forming bubbles which remain in the medium. This reaction results in the amplification of the mechanical changes that the microorganisms produce in the medium. The effect can be detected by means of ultrasonic wave amplitude continuous measurement since the bubbles increase the ultrasonic attenuation significantly. It is shown that microorganism concentrations of the order of 105 cells ml−1 can be detected using this method. This allows an improvement of three orders of magnitude in the ultrasonic detection threshold of microorganisms in conventional culture media, and is competitive with modern rapid microbiological methods. It can also be used for the characterization of the enzymatic activity.