Use of fermented kitchen waste in rearing Penaeus monodon larvae

Fermented vegetable and kitchen wastes are available as feeds for not only zoea but also mysis and up to certain points in the postlarval stages of sugpo, Penaeus monodon. It is recommended that the hatchery use fermented wastes as larval feed for P.monodon when diatoms or brine shrimp nauplii are lacking or in short supply. Among three stages namely, zoea, mysis and postlarva, the survival rate during postlarva particularly after P SUB-4 was quite low. The problems encountered are as follows: (a) how to prevent fermented particles from lumping, (b) how to prevent them from easily sinking to the bottom, and, (c) how to prevent bacteria and fungi, particularly Lagenidium sp blooming.

Nitrogen fixing bacteria, Azotobacter sp. in aquatic sediment

Non-symbiotic, free living, nitrogen fixing bacteria, Azotobacter sp. was estimated in sediments of estuarine, marine, backwater and mangrove environments of Portonovo. Number of colony forming units (CFU) of Azotobacter sp. was less (5 to 27 cells/g of dry sediment). CFU of total heterotrophic bacteria (THB), actinomycetes and fungi were between 4.1x10 super(6) and 4.5x10 super (7), 0.8x10 super(5) and 4.9x10 super(5), 1.1x10 super(5) and 3.8x10 super(5)/g respectively. Mangrove sediments contained more CFU of the above microbial groups.

Application of whey protein incorporation with Cinnamon oil as a preservative in Huse huso fillet under chilled storage condition

Biodegradable protein-based film was developed by incorporating cinnamon essential oil (CEO) into whey protein concentrate (WPC) at level of 0.8% and 1.5% v/v. Then physical and mechanical properties of the films were evaluated. Adding CEO to the WPC matrix decreased the water vapour permeability of the films and water solubility. Films containing CEO showed significant antibacterial activity both gram-positive and gram-negative strains and exhibited significant inhibitory effect on the studied fungi. In continue, the effect of whey coating and whey coating incorporated with 1.5% CEO on quality and shelf life of Huso huso fillet during refregrated (4±1°C) storage period were also investigated. The control and treated fish samples were analyzed for microbiological (total viable count, psychrophilic counts), chemical (PV, TBA, FFA, pH, TVB-N), and sensory characteristics in 4-day intervals up of microbial, chmical and sensoy analyses indicated lower levels of PV, TBA, FFA, pH, TVB-N in coasted sampels and specially, those with CEO while were kept in refrigerator. Based on results, whey protein edible coating contain 1.5% cinnamon essential oil could enhance preserving ability Huso huso during storage cold.

Study on the sustainability of FPC produced from Kilka (Clupeonella engrauliformis, C. grimmi and C. cultriventris) in two vacuum packaging and modified atmosphere packaging at different environmental factors

Fish protein concentrate (FPC) is a healthy, sustainable and high nutritive product which sanitized produced from fishes in which, protein and other nutrients are more concentrated than in fresh fishes. The aim of this research is to study on the sustainability of FPC produced from Kilka (Clupeonella engrauliformis , C. grimmi and C. cultriventris) in two Vaccum Packaging and Modified Atmosphere Packaging at different environmental factors during six months. In our study the analysis of FPC protein showed 91.2%, lipid: 0.5%, ash: 3.6%, moisture: 2.3%, Total Volatile Nitrogen: 10 ml/100gr and peroxide: 5meq/kg. Amino acids and fatty acids were also determined. Bacteria and Fungi were lower than 1000 colony. Samples are kept in different condition of temperature (5, 20 and 35 degree centigrade), humidity (25, 40 and 90 percent) and light and dark environment in six month. Lipid rate in FPC after 6 months in VP and MAP (60% C02, 30 % N2 and 10% O2), packages was decreased but was not significant (P>0.05). It was also detected that increase temperature lead to more decrease in lipid content. Protein rate of FPC was decreased from 91.2% to 73.6% during six months at 35°C in VP Package and from 91.2% to 69.4% in MAP package. These changes were significant (P<0.05). TVN and PV rate in FPC after 6 months in VP and MAP packages was increased but was significant (P<0.05). Amino acids and fatty acids were also determined. But more changes in MAP packages was detected.

Establishing a mangrove nursery

Mangroves play an important role in creating habitats for a diverse community of organisms ranging from bacteria and fungi to fishes and mammals. They grow in intertidal flats, estuaries and offshore islands. In the Philippines, mangrove forests have dramatically decreased in area since the start of the century, and therefore there is a need to reforest. However, first mangrove nurseries must be established since they serve as sources of planting materials for different mangrove species. Furthermore, nurseries would mean a sustainable source of livelihood for coastal communities because of continuous demand for propagules. A brief account is given of procedures as to the establishment of a mangrove nursery, describing the construction of a nursery, preparation of potting materials, seed collection, seed sowing, and maintenance and protection. Details are provided of the most common true mangrove species in the Philippines. The mangrove nursery is a place for raising and tending seedlings until they are ready for permanent planting. The establishment of mangrove nurseries is in line with government s efforts to rehabilitate the coastal and mangrove ecosystems.

Identification, characteristic and phylogenetic analysis of type II DNA topoisomerase gene in Giardia lamblia

The genes encoding type II DNA topoisomerases were investigated in Giardia lamblia genome, and a type IIA gene, GlTop 2 was identified. It is a single copy gene with a 4476 by long ORF without intron. The deduced amino acid sequence shows strong homology to eukaryotic DNA Top 2. However, some distortions were found, such as six insertions in the ATPase domain and the central domain, a similar to 100 as longer central domain; a similar to 200 as shorter C-terminal domain containing rich charged residues. These features revealed by comparing with Top 2 of the host, human, might be helpful in exploiting drug selectivity for antigiardial therapy. Phylogenetic analysis of eukaryotic enzymes showed that kinetoplastids, plants, fungi, and animals were monophyletic groups, and the animal and fungi lineages shared a more recent common ancestor than either did with the plant lineage; microsporidia grouped with fungi. However, unlike many previous phylogenetic analyses, the "amitochondriate" G. lamblia was not the earliest branch but diverged after mitochondriate kinetoplastids in our trees. Both the finding of typical eukaryotic type IIA topoisomerase and the phylogenetic analysis suggest G. lamblia is not possibly as primitive as was regarded before and might diverge after the acquisition of mitochondria. This is consistent with the recent discovery of mitochondrial remnant organelles in G. lamblia.

云南西双版纳几种热带兰菌根真菌的研究

:从云南西双版纳不同生境下的14 株热带兰菌根中分离到19 株真菌,分别鉴定为9 个属,其中优势 菌为镰孢霉属( Fusarium) 9 株占47. 37 %;组丝核菌属( Phacodium) 3 株占15. 79 %.

NK-lysin of channel catfish: Gene triplication, sequence variation, and expression analysis

Antimicrobial peptides (AMPs) are important components of the host innate immune response against microbial invasion. In addition to the previously known four classes of antimicrobial peptides, a fifth class of antimicrobial peptides has been recently identified to include NK-lysins that have a globular three-dimensional structure and are larger with 74-78 amino acid residues. NK-lysin has been shown to harbor antimicrobial activities against a wide spectrum of microorganisms including bacteria, fungi, protozoa, and parasites. To date, NK-lysin genes have been reported from only a limited number of organisms. We previously identified a NK-lysin cDNA in channel catfish. Here we report the identification of two noveltypes of NK-lysin transcripts in channel catfish. Altogether, three distinct NK-lysin transcripts exist in channel catfish. In this work, their encoding genes were identified, sequenced, and characterized. We provide strong evidence that the catfish NK-lysin gene is tripled in the same genomic neighborhood. All three catfish NK-lysin genes are present in the same genomic region and are tightly linked on the same chromosome, as the same BAC clones harbor all three copies of the NK-lysin genes. All three NK-lysin genes are expressed, but exhibit distinct expression profiles in various tissues. In spite of the existence of a single copy of NK-lysin gene in the human genome, and only a single hit from the pufferfish,genome, there are two tripled clusters of NK-lysin genes on chromosome 17 of zebrafish in addition to one more copy on its chromosome 5. The similarity in the genomic arrangement of the tripled NK-lysin genes in channel catfish and zebrafish suggest similar evolution of NK-lysin genes. (c) 2005 Elsevier Ltd. All rights reserved.

Root zone microbial populations, urease activities, and purification efficiency for a constructed wetland

In order to investigate the effects of microorganisms and their urease activities in macrophytic root zones on pollutant removal, four small-scale plots (SSPs) of vertical/reverse-vertical flow wetlands were set up to determine: a) the relationship between the abundance of microorganisms in the root zones and water purification efficiency; and b) the relationship between urease activities in the root zones and pollutant removal in a constructed wetland system. Total numbers of the microbial population (bacteria, fungi, and actinomyces) along with urease activities in the macrophytic root zones were determined. In addition, the relationships between microbial populations and urease activities as well as the wastewater purification efficiencies of total phosphorus (TP), total Kjeldahl nitrogen (TKN), biochemical oxygen demand in 5 days (BOD5), and chemical oxygen demand (COD) were also analyzed. The results showed that there was a highly significant positive correlation (r = 0.9772, P < 0.01) between the number of bacteria in the root zones and BOD5 removal efficiency and a significant negative correlation (r = -0.9092, P < 0.05) between the number of fungi and the removal efficiency of TKN. Meanwhile, there was a significant positive correlation (r = 0.8830, P < 0.05) between urease activities in the root zones and the removal efficiency of TKN. Thus, during wastewater treatment in a constructed wetland system, microorganism and urease activities in the root zones were very important factors.

Characterization and phylogenetic analysis of the chitinase gene from the Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus

A putative chitinase gene was identified within the fragment EcoRI-K of the Helicoverpa armigera single-nucleocapsid nucleopolyhedrovirus (HearNPV, also called HaSNPIV) genome. The open reading frame (ORF) contains 1713 nucleotides (nt) and encodes a protein of 570 amino acids (aa) with a predicted molecular weight of 63.6 kDa. Transcription started at about 18 h post infection (p.i.) and the protein was first detected at 20 h p.i. The times of transcription and expression are characteristic of a late baculovirus gene. 5' and 3' RACE indicated that transcription was initiated from the adenine residue located at -246 nt upstream from the ATG start site and the poly (A) tail was added at 267 nt downstream from the stop codon. This is the first report on the molecular characterization of a chitinase from a single nucleocapsid NPV. The phylogeny of baculoviral chitinase genes were extensively examined in comparison with chitinases derived from bacteria, fungi, nematode, actinomycetes, viruses, insects and mammals. Neighbor-joining and most parsimony analyses showed that the baculoviral chitinases were clustered exclusively within gamma-proteobacteria. Our results strongly suggest that baculoviruses acquired their chitinase genes from bacteria. (C) 2004 Elsevier B.V. All rights reserved.

The vertical microdistribution of cyanobacteria and green algae within desert crusts and the development of the algal crusts

Substantial amounts of algal crusts were collected from five different desert experimental sites aged 42, 34, 17, 8 and 4 years, respectively, at Shapotou ( China) and analyzed at a 0.1 mm microscale of depth. It was found that the vertical distribution of cyanobacteria and microalgae in the crusts was distinctly laminated into an inorganic-layer (ca. 0.00 - 0.02 mm, with few algae), an algae-dense-layer ( ca. 0.02 - 1.0 mm) and an algae-sparse-layer ( ca. 1.0 - 5.0 mm). It was interesting to note that in all crusts Scytonema javanicum Born et Flah ( or Nostoc sp., cyanobacterium), Desmococcus olivaceus (Pers ex Ach., green alga) Laundon and Microcoleus vaginatus Gom. ( cyanobacterium) dominated at the depth of 0.02 - 0.05, 0.05 - 0.1 and 0.1 - 1.0 mm, respectively, from the surface. Phormidium tenue Gom. ( or Lyngbya cryptovaginatus Schk., cyanobacterium) and Navicula cryptocephala Kutz.( or Hantzschia amphioxys (Ehr.) Grun. and N. cryptocephala together, diatom) dominated at the depth of 1.0 - 3.0 and 3.5 - 4.0 mm, respectively, of the crusts from the 42 and 34 year old sites. It was apparent that in more developed crusts there were more green algae and the niches of Nostoc sp., Chlorella vulgaris Beij., M. vaginatus, N. cryptocephala and fungi were nearer to the surface. If lichens and mosses accounted for less than 41.5% of the crust surface, algal biovolume was bigger when the crust was older, but the opposite was true when the cryptogams other than algae covered more than 70%. In addition to detailed species composition and biovolume, analyses of soil physicochemical properties, micromorphologies and mineral components were also performed. It was found that the concentration of organic matter and nutrients, electric conductivity, silt, clay, secondary minerals were higher and there were more micro-beddings in the older crusts than the less developed ones. Possible mechanisms for the algal vertical microdistribtion at different stages and the impact of soil topography on crust development are discussed. It is concluded that biomethods ( such as fine species distribution and biovolume) were more precise than mineralogical approaches in judging algal crust development and thus could be a better means to measure the potentiality of algal crusts in desert amelioration.

Effect of desert soil algae on the stabilization of fine sands

Four filamentous cyanobacteria, Microcoleus vaginatus, Phormidium tenue, Scytonema javanicum (Kutz.) and Nostoc sp., and a single-celled green alga, Desmococcus olivaceus, all isolated from Shapotou (Ningxia Hui Autonomous Region of China), were batch cultured and inoculated onto unconsolidated sand in greenhouse and field experiments. Their ability to reduce wind erosion in sands was quantified by using a wind tunnel laboratory. The major factors related to cohesion of algal crusts, such as biomass, species, species combinations, bioactivity, niche, growth phase of algae, moisture, thickness of the crusts, dust accretion (including dust content and manner of dust added) and other cryptogams (lichens, fungi and mosses) were studied. The best of the five species were M. vaginatus and P. tenue, while the best mix was a blend of 80% M. vaginatus and 5% each of P. tenue, S. javanicum, Nostoc sp. and D. olivaceus. The threshold friction velocity was significantly increased by the presence of all of the cyanobacterial species, while the threshold impact velocity was notably increased only by the filamentous species. Thick crusts were less easily eroded than thin crusts, while biomass was more effective than thickness. Dust was incorporated best into Microcoleus crust when added in small amounts over time, and appeared to increase growth of the cyanobacterium as well as strengthen the cohesion of the crust. Microbial crust cohesion was mainly attributed to algal aggregation, while lichens, fungi and mosses affected more the soil structure and physico-chemical properties.

固氮树木丛枝菌根真菌(AMF)遗传多样性的研究

丛枝菌根是自然生态系统中分布最广的内生菌根，在促进植物生存与生长、植被恢复以及生物多样性保护等方面有着非常重要的作用。 随着现代分子生物学技术的不断发展，丛枝菌根真菌研究得到空前发展。大量DNA分析新技术在丛枝菌根真菌的分子遗传、分类鉴定、种间及种内亲缘关系、菌株持久性等方面得到应用，与传统菌根研究方法相比，表现出巨大的优越性。 本项研究利用分子生物学技术和研究方法对中国吉林长白山地区非豆科固氮植物以及东北地区固氮树木的丛枝菌根真菌DNA分子多态性及其与宿主植物之间的相互关系等进行初步研究，旨在利用分子生态学理论和研究方法揭示丛枝菌根真菌多样性及其与宿主植物之间相互适应和协同进化的一般规律，为更好地保护和利用这一重要的微生物资源提供理论依据。 通过比较与筛选，建立起丛枝菌根真菌痕量DNA快速、简便、高效的提取纯化方法——改良CTAB法。经PCR检测，所得DNA满足进一步研究的要求。 根据丛枝菌根真菌18s rRNA 小亚基核基因片段的特点，利用“科”特异性引物进行半巢式标记PCR (Labelled Primers-PCR，LP-PCR) 及单链构象多态性（Single-Stranded Conformation Polymorphism，SSCP）分析技术研究了长白山赤杨在属水平上表现出的多样性。另外，利用巢式PCR-RFLP技术，分别对来源于长白山不同海拔的四种赤杨菌根样品的AMF侵染情况及其系统进化进行了研究。利用AMF特异性PCR技术对我国东北地区四种非豆科树木和5种豆科树木菌根侵染情况和系统发育规律进行了研究 研究结果显示：赤杨根内AMF存在丰富的基因多样性。AMF的侵染有从宿主混乱性向宿主专一性发展的趋势。 长白山地区赤杨属植物至少有东北赤杨、西伯利亚赤杨和色赤杨三个树种在其“属”的水平上与共生的球囊霉科（Glomaceae）至少一个“种” 的丛枝菌根真菌，即根内球囊霉（Glomus intraradix），在“种”的水平上表现出不相关于宿主海拔高度的某种相互选择性。 东北赤杨AMF菌的宿主专一性水平最强，球囊霉属已成为东北赤杨的优势侵染类群；对于其余三种赤杨，AMF则出现宿主混乱现象。宿主因素比海拔因素对AMF侵染特异性的影响更为重要。 豆科与非豆科样本的混乱性都比较强，在特定植物和AMF属之间无特异侵染规律，相对来说，非豆科树木比豆科树木对于AMF的选择性要更强一些，更倾向于和球囊霉属与无梗孢囊霉属的AMF构建共生体。

华东地区木材腐朽菌多样性与资源研究

木材腐朽菌是生物多样性的重要组成部分，在森林生态系统中起着关键的降解还原作用；同时，木材腐朽菌还是重要的生物资源，与人类的生产与生活密切相关，具有重要的经济价值。因此，木腐菌一直是真菌研究的重点领域之一，然而过去对华东地区木腐菌的研究还非常薄弱，对华东地区木腐菌的种类和资源还缺乏清晰的认识。本文对华东地区不同森林生态类型中的木腐菌进行了广泛的调查采样，通过形态学、分子系统学和单孢融合交配实验，对华东地区的木腐菌多样性与资源进行了系统的研究，同时对具有重要经济意义和潜在应用价值的种类进行了菌种的分离保藏，并初步分析了华东地区木腐菌的区系特点。通过本论文的研究，提高了对华东地区木腐菌资源与多样性的认识，丰富了我国木材腐朽菌的种类，为控制林木病原菌、开发利用有益真菌资源提供了基本信息和科学依据。本论文的主要研究结论如下： 1．华东地区的木腐菌有3目13科92属270种，其中真菌新种6个，分别是：铁杉集毛孔菌Coltricia tsugicola Y.C. Dai & B.K. Cui，香榧嗜蓝孢孔菌Fomitiporia torreyae Y.C. Dai & B.K. Cui，拟囊状体大孔菌Megasporoporia cystidiolophora B.K. Cui & Y.C. Dai，菌索多年卧孔菌Perenniporia rhizomorpha B.K. Cui, Y.C. Dai & Decock，微小硬孔菌Rigidoporus minutus B.K. Cui & Y.C. Dai，浅黄芮氏孔菌Wrightoporia luteola B.K. Cui & Y.C. Dai；中国新记录种9个，分别是：紫多孢孔菌Abundisporus violaceus (Wakef.) Ryvarden，卡玛蜡孔菌Ceriporia camaresiana (Bourdot & Galzin) Bondartsev & Singer，撕裂蜡孔菌Ceriporia lacerata N. Maek., Suhara & R. Kondo，塔斯马尼亚集毛孔菌Coltriciella tasmanica (Cleland & Rodway) D.A. Reid，瑞克纤孔菌Inonotus rickii (Pat.) D.A. Reid，骨质多年卧孔菌Perenniporia minutissima (Yasuda) T. Hatt. & Ryvarden，灰硬孔菌Rigidoporus cinereus Núñez & Ryvarden，凹形栓孔菌Trametes ectypus (Berk. & M.A. Curtis) Gilb. & Ryvarden，变形干酪菌Tyromyces transformatus Núñez & Ryvarden。 2．利用分子系统学方法，确定了一些通过形态学研究难以鉴定或容易混淆的种类的分类地位，并对嗜蓝孢孔菌属、彩孔菌属和多年卧孔菌属进行了系统发育分析，发现木腐菌新种3个：Fomitiporia sp.、Hapalopilus sp. 和Perenniporia sp.。 3．华东地区的异担子菌为岛生异担子菌，并且存在两个生物种：T生物种和Y生物种。T生物种为腐生菌，Y生物种为兼性腐生菌，华东地区不存在多年异担子菌这一严重的森林病原菌。 4．华东地区的木腐菌种类丰富，组成复杂多样。优势科为多孔菌科，其次为锈革孔菌科，这两科的种类构成了华东地区木腐菌类区系的主体；优势属主要有多年卧孔菌属、多孔菌属、针层孔菌属和泊氏孔菌属。 4．华东地区木腐菌科的地理成分分为3类：热带亚热带成分，北温带成分和世界广布成分，以世界广布成分为主。属的地理成分分为5类：世界广布属，北温带分布属，热带–亚热带分布属，东亚–北美分布属，大洋洲–北温带分布属，以世界广布属和北温带分布属为主。种的地理成分分为8类：世界广布种，北温带分布成分，泛热带分布成分，亚–欧共有成分，东亚–北美共有成分，东亚–澳大利亚共有成分，东亚成分，中国特有种，以北温带分布种和世界广布种为主。 5．华东地区木腐菌的各主要区系成分均有分布，以世界广布成分和北温带成分为主，表现出明显的北温带性质，可能起源于北半球，华东地区木腐菌类的区系地理成分与其所处的地理位置、气候特点与植物区系的组成密切相关。此外，华东地区的中国特有种类也较为丰富，说明了华东地区木腐菌类的区系具有一定的独特性，也在一定程度上反映了华东地区生态环境条件的特殊性，而木腐菌的生长与环境条件和寄主树木种类有很大的关系。 6．华东地区的木腐菌资源非常丰富，林木病原菌有36种，其中新发现的病原菌有3种；野生的食用木腐菌有11种，野生的药用木腐菌64种，工业用木腐菌有28种。对其中的一种重要经济真菌——黄白多年卧孔菌进行了分离培养，找出了最佳生长条件：最适生长温度为25℃左右，相对最适pH值为5.5，相对最好的碳源为可溶性淀粉和葡萄糖，相对最好的氮源为酵母汁。

固氮树木丛枝菌根真菌（AMF）遗传多样性的研究

丛枝菌根是自然生态系统中分布最广的内生菌根，在促进植物生存与生长、植被恢复以及生物多样性保护等方面有着非常重要的作用。 随着现代分子生物学技术的不断发展，丛枝菌根真菌研究得到空前发展。大量DNA分析新技术在丛枝菌根真菌的分子遗传、分类鉴定、种间及种内亲缘关系、菌株持久性等方面得到应用，与传统菌根研究方法相比，表现出巨大的优越性。 本项研究利用分子生物学技术和研究方法对中国吉林长白山地区非豆科固氮植物以及东北地区固氮树木的丛枝菌根真菌DNA分子多态性及其与宿主植物之间的相互关系等进行初步研究，旨在利用分子生态学理论和研究方法揭示丛枝菌根真菌多样性及其与宿主植物之间相互适应和协同进化的一般规律，为更好地保护和利用这一重要的微生物资源提供理论依据。 通过比较与筛选，建立起丛枝菌根真菌痕量DNA快速、简便、高效的提取纯化方法——改良CTAB法。经PCR检测，所得DNA满足进一步研究的要求。 根据丛枝菌根真菌18s rRNA 小亚基核基因片段的特点，利用“科”特异性引物进行半巢式标记PCR (Labelled Primers-PCR，LP-PCR) 及单链构象多态性（Single-Stranded Conformation Polymorphism，SSCP）分析技术研究了长白山赤杨在属水平上表现出的多样性。另外，利用巢式PCR-RFLP技术，分别对来源于长白山不同海拔的四种赤杨菌根样品的AMF侵染情况及其系统进化进行了研究。利用AMF特异性PCR技术对我国东北地区四种非豆科树木和5种豆科树木菌根侵染情况和系统发育规律进行了研究 研究结果显示：赤杨根内AMF存在丰富的基因多样性。AMF的侵染有从宿主混乱性向宿主专一性发展的趋势。 长白山地区赤杨属植物至少有东北赤杨、西伯利亚赤杨和色赤杨三个树种在其“属”的水平上与共生的球囊霉科（Glomaceae）至少一个“种” 的丛枝菌根真菌，即根内球囊霉（Glomus intraradix），在“种”的水平上表现出不相关于宿主海拔高度的某种相互选择性。 东北赤杨AMF菌的宿主专一性水平最强，球囊霉属已成为东北赤杨的优势侵染类群；对于其余三种赤杨，AMF则出现宿主混乱现象。宿主因素比海拔因素对AMF侵染特异性的影响更为重要。 豆科与非豆科样本的混乱性都比较强，在特定植物和AMF属之间无特异侵染规律，相对来说，非豆科树木比豆科树木对于AMF的选择性要更强一些，更倾向于和球囊霉属与无梗孢囊霉属的AMF构建共生体.