Neutrality tests using DNA polymorphism from multiple samples

The polymorphism of a gene or a locus is studied with increasing frequency by multiple laboratories or the same group at different times. Such practice results in polymorphism being revealed by different samples at different regions of the locus. Tests of neutrality have been widely conducted for polymorphism data but commonly used statistical tests cannot be applied directly to such data. This article provides a procedure to conduct a neutrality test and details are given for two commonly used tests. Applying the two new tests to the chemokine-receptor gene (CCR5) in humans, we found that the hypothesis that all mutations are selectively neutral cannot explain the observed pattern of DNA polymorphism.

Croton tiglium (Linn) seed as an ideal eradicant of pests and predators in fish farms

The toxicity of Croton tiglium seed is very effective in the eradication of most of the aquatic fauna except a few species of hard shelled crustaceans such as crabs and prawns which are resistant to even very high concentrations of it. Its toxicity ranged between 0.4 and 2.2 p.p.m. for different species of fishes. Application of homogenized C. tiglium seed at the rate of 10 kg/ha (0.5 m depth) is found effective for the eradication of aquatic pests and predators of fish farms. While its toxicity lasts for 5-8 days in still water ponds, it is only for 1-3 days in tidal ponds with frequent replenishment of water. This method is thus most useful for the initial preparation of the ponds for pisciculture.

Studies on the probable sources of fungal infection and the control measures in a fish seed farm

The causes of mortality of fry of cultivable fishes in a fish seed farm were investigated. The mortality was due to fungal infection and the pathogen was Saprolegnia sp. The sources of infection were unhygienic breeding hapas, spawnery hapas in the cemented ponds, hatching jars and excess feeding. Application of one kg slaked lime followed by 75g of CuSo sub(4)(l-0.5 p.p.m.) and 150g of KMno sub(4)(2-1 p.p.m.) per each nursery (158m³ water) controlled the pathogen.

Estimating material elasticity by spherical indentation load-relaxation tests on viscoelastic samples of finite thickness

A two-step viscoelastic spherical indentation method is proposed to compensate for 1) material relaxation and 2) sample thickness. In the first step, the indenter is moved at a constant speed and the reaction force is measured. In the second step, the indenter is held at a constant position and the relaxation response of the material is measured. Then the relaxation response is fit with a multi-exponential function which corresponds to a three-branch general Maxwell model. The relaxation modulus is derived by correcting the finite ramp time introduced in the first step. The proposed model takes into account the sample thickness, which is important for applications in which the sample thickness is less than ten times the indenter radius. The model is validated numerically by finite element simulations. Experiments are carried out on a 10% gelatin phantom and a chicken breast sample with the proposed method. The results for both the gelatin phantom and the chicken breast sample agree with the results obtained from a surface wave method. Both the finite element simulations and experimental results show improved elasticity estimations by incorporating the sample thickness into the model. The measured shear elasticities of the 10% gelatin sample are 6.79 and 6.93 kPa by the proposed finite indentation method at sample thickness of 40 and 20 mm, respectively. The elasticity of the same sample is estimated to be 6.53 kPa by the surface wave method. For the chicken breast sample, the shear elasticity is measured to be 4.51 and 5.17 kPa by the proposed indentation method at sample thickness of 40 and 20 mm, respectively. Its elasticity is measured by the surface wave method to be 4.14 kPa. © 2011 IEEE.

Observations on the fish and prawn seed resources of the Gulf of Kutch and their utilization in aquaculture

The characteristics of the fish and prawn seed resources of the Gulf of Kutch are described. Results of experiments conducted in a primary low saline reservoir of a solar salt works to study their utility for aquaculture are reported. The prospective role of aquaculture in augmenting fish production along the coast is also discussed.

Environmental impact of wild shrimp seed collection with non-selective gears on coastal aquatic biodiversity

Collection of wild tiger shrimp (Penaeus monodon) seed with non-selective gears and its impact upon the coastal aquatic biodiversity has been investigated. Loss of undesired species as by-catch was estimated to be 1,075 individuals for collection of every desired shrimp seed which amounted to be 132 billion in a study area stretching 3 km long coastline of the Sagar Island under the Sunderban Biosphere, West Bengal, India. Non-penaeid shrimp seed and crab larvae accounted to be maximally destroyed as their overall contribution towards the by-catch were 56.5% and 29.44%, respectively. Though, rate of bycatch loss was found to be inversely correlated with the rate of shrimp seed collected per gear (r=-0.82, p<0.05) during the peak season (May-September), the overall relationship between them exhibited a linear relationship (r=0.73, p<0.05). By-catch loss for every shrimp seed collection tended to increase up to a daily collection of 2,500 numbers of shrimp seeds per gear followed by a decline. Coastal aquatic community was maximally damaged when the heterogeneity and stability as reflected by different diversity indices were higher.

Basic steps in the production of the African catfish seed

A typical production cycle for African catfish farming begins with a selection of fingerlings or juvenile fish of good quality for brood stock development. Fish are selected from a family or grow out stock basing on records of the origin,age, strain and performance history of the parents or from the wild in this brochure, we explain the basic steps and requirements a farmer needs in order to achieve good results in the hatchery.

The use of centrifuge tests in the study of arching

The horizontal arching mechanism transfers horizontal earth pressures acting on flexible retaining wall panels to stiffer neighbouring elements via soil shear stresses. In this research, the horizontal arching mechanism and lateral displacements of fixed cantilever walls in a model basement are investigated using centrifuge tests. A series of six tests was carried out at 45 gravities where the panel widths and thicknesses around the model basement were varied, so that the effects of panel geometry and stiffness on horizontal arching could be studied. It is shown that panel crest displacements and base bending moments of the most flexible, narrow panels can be an order of magnitude smaller than conventional active earth pressure calculations would allow. It is suggested that the reduction of earth pressure acting on a panel is directly correlated to the mobilized soil shear strength and hence, soil shear strain. Earth pressure coefficients K are plotted against panel displacements normalized by the panel width, u/B, to simulate the reduction of K with increasing soil strain.An idealized K-u/B curve is introduced, characterised by a reference distortion (u/B) ref beyond which fully plastic soil arching can be inferred, and which is related to the corresponding reference shear strain γ ref at which soil strength is fully mobilized in element tests. © 2006 Taylor & Francis Group, London.

Case study on a deep excavation in soft ground by centrifuge model tests

This paper provides a case study on the deepest excavation carried out so far in the construction of the metro network in Shanghai, which typically features soft ground. The excavation is 38 m deep with retaining walls 65 m deep braced by 9 levels of concrete props. To obtain a quick and rough prediction, two centrifuge model tests were conducted, in which one is for the 'standard' section with green field surrounding and the other with an adjacent piled building. The tests were carried out in a run-stop-excavation-run style, in which excavation was conducted manually. By analyzing the lateral wall displacement, ground deformation, bending moment and earth pressure, the test results are shown to be reasonably convincing and the design and construction were validated. Such industry orientated centrifuge modeling was shown to be useful in understanding the performance of geotechnical processes, especially when engineers lack relevant field experience. © 2010 Taylor & Francis Group, London.

Dynamic centrifuge tests on shallow tunnel models in dry sand

In the framework of the Italian research project ReLUIS-DPC, a set of centrifuge tests were carried out at the Schofield Centre in Cambridge (UK) to investigate the seismic behaviour of tunnels. Four samples of dry sand were prepared at different densities, in which a small scale model of circular tunnel was inserted, instrumented with gauges measuring hoop and bending strains. Arrays of accelerometers in the soil and on the box allowed the amplification of ground motion to be evaluated; LVDTs measured the soil surface settlement. This paper describes the main results of this research, showing among others the evolution of the internal forces during the model earthquakes at significant locations along the tunnel lining. © 2010 Taylor & Francis Group, London.