Comportamiento térmico y mecánico del yeso con adiciones de aerogel de sílice granulado

La presente tesis doctoral aborda el estudio de un nuevo material mineral, compuesto principalmente por una matriz de yeso (proveniente de un conglomerante industrial basado en sulfato de calcio multifase) y partículas de aerogel de sílice hidrófugo mesoporoso, compatibilizadas mediante un surfactante polimérico, debido a su alto carácter hidrófugo. La investigación se centra en conocer los factores que influyen en las propiedades mecánicas y conductividad térmica del material compuesto generado. Este estudio pretende contribuir al conocimiento sobre el desarrollo de nuevos morteros de elevado aislamiento térmico que puedan ser utilizados en la rehabilitación energética de edificios de viviendas existentes, debido a que estos representan gran parte del consumo energético del parque de viviendas de España, aunque también a nivel internacional. De los materiales utilizados para desarrollar los morteros estudiados, el yeso, además de ser un material muy abundante, especialmente en España, requiere una menor cantidad de energía para la fabricación de un conglomerante (debido a una menor temperatura de fabricación), en comparación con el cemento o la cal, por lo que presenta una menor huella de carbono que estos últimos. Por otro lado, el aerogel de sílice hidrófugo mesoporoso es, de acuerdo con la documentación disponible, el material que posee actualmente la mayor capacidad de aislamiento térmico en el mercado. El desarrollo de nuevos morteros minerales con una capacidad de aislamiento térmico mayor que los materiales aislantes utilizados tradicionalmente, tiene una aplicación relevante en los casos de rehabilitación energética de edificios históricos y patrimoniales, en los que se requiere la aplicación del aislamiento por el interior de la fachada, ya que este tipo de soluciones tienen el inconveniente de reducir el espacio habitable de las áreas involucradas, especialmente en zonas climáticas en las que el aislamiento térmico puede suponer un espesor considerable, por lo que es ideal utilizar materiales de altas prestaciones de aislamiento térmico capaces de aportar el mismo nivel de aislamiento (o incluso mayor), pero en un espesor considerablemente menor. La investigación se desarrolla en tres etapas: bibliográfica, experimental y de simulación. La primera etapa, parte del estudio de la bibliografía existente, relacionada con materiales aislantes, incluyendo soluciones basadas, tanto en morteros aislantes, como en paneles de aislamiento térmico. La segunda, de carácter experimental, se centra en estudiar la influencia de la microestrucrura y macroestructura, del nuevo material mineral, en las propiedades físicas elementales, mecánicas y conductividad térmica del compuesto. La tercera etapa, mediante una simulación del consumo energético, consiste en cuantificar teóricamente el potencial ahorro energético que puede aportar este material en un caso de rehabilitación energética en particular. La investigación experimental se centró principalmente en conocer los factores principales que influyen en las propiedades mecánicas y conductividad térmica de los materiales compuestos minerales desarrollados en esta tesis. Para ello, se llevó a cabo una caracterización de los materiales de estudio, así como el desarrollo de distintas muestras de ensayo, de tal forma que se pudo estudiar, tanto la hidratación del yeso en los compuestos, como su posterior microestructura y macroestructura, aspectos fundamentales para el entendimiento de las propiedades mecánicas y conductividad térmica del compuesto aislante. De este modo, se pudieron conocer y cuantificar, los factores que influyen en las propiedades estudiadas, aportando una base de conocimiento y entendimiento de este tipo de compuestos minerales con aerogel de sílice hidrófugo, no existiendo estudios publicados hasta el momento de finalización de esta tesis, con la aproximación al material propuesta en este estudio, ni con yeso (basado en sulfato de calcio multifase), ni con otro tipo de conglomerantes. Particularmente, se determinó la influencia que tiene la incorporación de partículas de aerogel de sílice hidrófugo, en grandes proporciones en volumen, en un compuesto mineral basado en distintas fases de sulfato de calcio. No obstante, para llevar a cabo las mezclas, fue necesario utilizar un surfactante para compatibilizar este tipo de partículas, con el conglomerante basado en agua. El uso de este tipo de aditivos tiene una influencia, no solo en el aerogel, sino en las propiedades del compuesto en general, dependiendo de su concentración, por lo que se establecieron dos porcentajes de adición: la primera, determinada a partir de la cantidad mínima necesaria para compatibilizar las mezclas (0,1% del agua de amasado), y la segunda, como límite superior, la concentración utilizada habitualmente a nivel industrial para estabilizar burbujas de aire en hormigones espumados (5%). El surfactante utilizado mostró la capacidad de modificar la superficie del aerogel, cambiando el comportamiento de las partículas frente al agua, permitiendo una invasión parcial de su estructura porosa, por parte del agua de amasado. Este comportamiento supone un aumento muy importante en la relación agua/yeso, afectando el hábito cristalino e influenciando negativamente las propiedades mecánicas de la matriz de yeso, presentando un efecto aún notable a mayor concentración de surfactante (5%). En cuanto a las propiedades finales alcanzadas, fue posible lograr un compuesto mineral ultraligero (200 kg/m3), con alrededor de un 60% de aerogel en volumen y de alta capacidad aislante (0,028 W/m•K), presentando una conductividad térmica notablemente menor que los morteros aislantes del mercado, e incluso también menor que la de los aislantes tradicionales basado en las lanas minerales o EPS; no obstante, con la limitante de presentar bajas propiedades mecánicas, condicionando su posible aplicación futura. Entre los factores principales relacionados con las propiedades mecánicas, se encontró que estas dependen exponencialmente del volumen de yeso en el compuesto; no obstante, factores de segundo orden, como el grado de hidratación, o una mejor distribución del conglomerante entre las partículas de aerogel, debido al aumento de la superficie específica del polvo mineral, pueden aumentar las propiedades mecánicas entre el doble y el triple, dependiendo del volumen de aerogel en cuestión. Además, se encontró que el aerogel, en conjunto con el surfactante, es capaz de introducir una gran cantidad de aire (0,70 m3 por cada m3 de aerogel), que unido al agua evaporada (no consumida por el conglomerante durante la hidratación), el volumen de aire total alcanza, generalmente, un 40%, independientemente de la cantidad de aerogel en la mezcla. De este modo, el aire introducido en la matriz desplaza las proporciones en volumen del aerogel y del yeso, disminuyendo, tanto las propiedades mecánicas, como la capacidad aislante de compuesto mineral. Por otro lado, la conductividad térmica mostró tener una dependencia directa de la contribución de las tres fases principales en el compuesto: yeso, aerogel y aire ocluido. De este modo, se pudo desarrollar un modelo matemático, adaptado de uno existente, capaz de calcular, con bastante precisión, la relación de los tres componentes mencionados, en la conductividad térmica de los compuestos, para el rango de volúmenes y materiales utilizados en esta tesis. Finalmente, la simulación del consumo energético realizada a una vivienda típica de España, de los años 1900 a 1959 (basada en muros de ladrillo macizo), para las zonas climáticas estudiadas (A, D y E), permitió observar el potencial ahorro energético que puede aportar este material, dependiendo de su espesor, como aislamiento interior de los muros de fachada. Particularmente, para la zona A, se determinó un espesor óptimo de 1 cm, mientras que para la zona D y E, 3,5 y 3,9 cm respectivamente. En este sentido, el nuevo material estudiado es capaz de disminuir, entre un 35% y un 80%, el espesor de la capa aislante, en comparación con paneles de lana de roca o los morteros minerales de mayor capacidad aislante del mercado español respectivamente. ABSTRACT The present doctoral thesis studies a new mineral-based composite material, composed by a gypsum matrix (based on an industrial multiphase gypsum binder) and mesoporous hydrophobic silica aerogel particles, compatibilized with a polymeric surfactant due to the high hydrophobic character of the insulating particles. This study pretends to contribute to the development of new composite insulating materials that could be used in energy renovation of existing dwellings, in order to reduce their high energy consumption, as they represent a great part of the total energy consumed in Spain, but also internationally. Between the materials used to develop de studied insulating mortars, gypsum, besides being an abundant material, especially in Spain, requires less energy for the manufacture of a mineral binder (due to lower manufacturing temperatures), compared to lime or cement, thus presenting lower carbon footprint. In other hand, the hydrophobic mesoporous silica aerogel, is, according to the existing references, the material with the highest know insulating capacity in the market. The development of new mineral mortars with higher thermal insulation capacity than traditional insulating materials, presents a relevant application in energy retrofitting of historic and cultural heritage buildings, in which implies that the insulating material should be installed as an internal layer, rather than as an external insulating system. This type of solution involves a reduced internal useful area, especially in climatic zones where the demand for thermal insulation is higher, and so the insulating layer thickness, being idealistic to use materials with very high insulating properties, in order to reach same insulating level (or higher), but in lower thickness than the provided by traditional insulating materials. This research is developed in three main stages: bibliographic, experimental and simulation. The first stage starts by studying the existing references regarding thermally insulating materials, including existing insulating mortars and insulating panels. The second stage, mainly experimental, is centered in the study of the the influence of the microstructure and macrostructure in the physical and mechanical properties, and also in the thermal conductivity of the new mineral-based material. The thirds stage, through energy simulation, consists in theoretically quantifying the energy savings potential that can provide this type of insulating material, in a particular energy retrofitting case study. The experimental research is mainly focused in the study of the factors that influence the mechanical properties and the thermal conductivity of the thermal insulating mineral composites developed in this thesis. For this, the characterization of the studied materials has been performed, as well as the development of several experimental samples, in order to study the hydration of the mineral binder within the composites, but also the final microstructure and macrostructure, fundamental aspects for the understanding of the composite’s mechanical and insulating properties. Thus, is was possible to determine and quantify the factors that influence the studied material properties, providing a knowledge base and understanding of mineral composites that comprises mesoporous hydrophobic silica aerogel particles, being the first study up to date regarding the specific approach of the present study, regarding not just multiphase calcium sulfate plaster, but also other mineral binders. Particularly, the influence of the incorporation of hydrophobic silica aerogel particles, in high volume ratios into a mineral compound, based on different phases of calcium sulfate has been determined. However, to perform mixing, it is necessary to use a surfactant in order to compatibilize these particles with the water-based mineral binder. The use of such additives has an influence, not only in the aerogel, but the overall properties of the compound, so two different surfactant concentration has been studied: the first, the minimum amount of surfactant (used in this thesis) in order to develop the slurries (0.1% concentration of the mixing water), and the second, as the upper limit, the concentration usually used industrially to stabilize air bubbles in foamed concrete (5%). One of the side effects of using such additive, was the modification of the aerogel particles, by changing their behavior in respect to water, generating a partial invasion of the aerogel’s porous structure, by the mixing water. This behavior produces a very important increase in water/binder ratios, affecting the crystal habit and negatively influencing the mechanical properties of the gypsum matrix. This effect further increased when a higher concentration of surfactant (5%) is used. Regarding final materials properties, it was possible to achieve an ultra-lightweight mineral composite (200 kg/m3), with around 60% by volume of aerogel, presenting a very high insulating capacity (0.028 W/m•K), a noticeable lower thermal conductivity compared to the insulating mortars and traditional thermal insulating panels on the market, such as mineral wool or EPS; however, the limiting factor for future’s material application in buildings, is related to the very low mechanical properties achieved. Among the main factors related to the mechanical properties, it has been found an exponential correlation to the volume of gypsum in the composite. However, second-order factors such as the degree of hydration, or a better distribution of the binder between the aerogel particles, due to the increased surface area of the mineral powder, can increase the mechanical properties between two to three times, depending aerogel volume involved. In addition, it was found that the aerogel, together with the surfactant, is able to entrain a large amount of air volume (around 0.70 m3 per m3 of aerogel), which together with the evaporated water (not consumed by the binder during hydration), can reach generally around 40% of entrained air within the gypsum matrix, regardless of the amount of aerogel in the mixture. Thus, the entrained air into the matrix displaces the volume proportions of the aerogel and gypsum, reducing both mechanical and insulating properties of the mineral composite. On the other hand, it has been observed a direct contribution of three main phases into the thermal conductivity of the composite: gypsum, aerogel and entrained air. Thus, it was possible to develop a mathematical model (adapted from an existing one), capable of calculating quite accurate the thermal conductivity of such mineral composites, from the ratio these three components and for the range of volumes and materials used in this thesis. Finally, the energy simulation performed to a typical Spanish dwelling, from the years 1900 to 1959 (mainly constructed with massive clay bricks), within three climatic zones of Spain (A, D and E), showed the energy savings potential that can provide this type of insulating material, depending on the thickness of the applied layer. Particularly, for the climatic A zone, it has been found an optimal layer thickness of 1 cm, while for zone D and E, 3.5 and 3.9 cm respectively. In this manner, the new studied materials is capable of decreasing the thickness of the insulating layer by 35% and 80%, compared with rock wool panels or mineral mortars with the highest insulating performance of the Spanish market respectively.

Temperature and precipitation effects on wheat yield across a European transect: a crop model ensemble analysis using impact response surfaces

This study explored the utility of the impact response surface (IRS) approach for investigating model ensemble crop yield responses under a large range of changes in climate. IRSs of spring and winter wheat Triticum aestivum yields were constructed from a 26-member ensemble of process-based crop simulation models for sites in Finland, Germany and Spain across a latitudinal transect. The sensitivity of modelled yield to systematic increments of changes in temperature (-2 to +9°C) and precipitation (-50 to +50%) was tested by modifying values of baseline (1981 to 2010) daily weather, with CO2 concentration fixed at 360 ppm. The IRS approach offers an effective method of portraying model behaviour under changing climate as well as advantages for analysing, comparing and presenting results from multi-model ensemble simulations. Though individual model behaviour occasionally departed markedly from the average, ensemble median responses across sites and crop varieties indicated that yields decline with higher temperatures and decreased precipitation and increase with higher precipitation. Across the uncertainty ranges defined for the IRSs, yields were more sensitive to temperature than precipitation changes at the Finnish site while sensitivities were mixed at the German and Spanish sites. Precipitation effects diminished under higher temperature changes. While the bivariate and multi-model characteristics of the analysis impose some limits to interpretation, the IRS approach nonetheless provides additional insights into sensitivities to inter-model and inter-annual variability. Taken together, these sensitivities may help to pinpoint processes such as heat stress, vernalisation or drought effects requiring refinement in future model development.

Structural changes in hemoglobin during adsorption to solid surfaces: Effects of pH, ionic strength, and ligand binding

We have studied the adsorption of two structurally similar forms of hemoglobin (met-Hb and HbCO) to a hydrophobic self-assembled methyl-terminated thiol monolayer on a gold surface, by using a Quartz Crystal Microbalance (QCM) technique. This technique allows time-resolved simultaneous measurements of changes in frequency (f) (c.f. mass) and energy dissipation (D) (c.f. rigidity/viscoelastic properties) of the QCM during the adsorption process, which makes it possible to investigate the viscoelastic properties of the different protein layers during the adsorption process. Below the isoelectric points of both met-Hb and HbCO, the ΔD vs. Δf graphs displayed two phases with significantly different slopes, which indicates two states of the adsorbed proteins with different visco-elastic properties. The slope of the first phase was smaller than that of the second phase, which indicates that the first phase was associated with binding of a more rigidly attached, presumably denatured protein layer, whereas the second phase was associated with formation of a second layer of more loosely bound proteins. This second layer desorbed, e.g., upon reduction of Fe3+ of adsorbed met-Hb and subsequent binding of carbon monoxide (CO) forming HbCO. Thus, the results suggest that the adsorbed proteins in the second layer were in a native-like state. This information could only be obtained from simultaneous, time-resolved measurements of changes in both D and f, demonstrating that the QCM technique provides unique information about the mechanisms of protein adsorption to solid surfaces.

Identification of the prooxidant site of human ceruloplasmin: A model for oxidative damage by copper bound to protein surfaces

Free transition metal ions oxidize lipids and lipoproteins in vitro; however, recent evidence suggests that free metal ion-independent mechanisms are more likely in vivo. We have shown previously that human ceruloplasmin (Cp), a serum protein containing seven Cu atoms, induces low density lipoprotein oxidation in vitro and that the activity depends on the presence of a single, chelatable Cu atom. We here use biochemical and molecular approaches to determine the site responsible for Cp prooxidant activity. Experiments with the His-specific reagent diethylpyrocarbonate (DEPC) showed that one or more His residues was specifically required. Quantitative [14C]DEPC binding studies indicated the importance of a single His residue because only one was exposed upon removal of the prooxidant Cu. Plasmin digestion of [14C]DEPC-treated Cp (and N-terminal sequence analysis of the fragments) showed that the critical His was in a 17-kDa region containing four His residues in the second major sequence homology domain of Cp. A full length human Cp cDNA was modified by site-directed mutagenesis to give His-to-Ala substitutions at each of the four positions and was transfected into COS-7 cells, and low density lipoprotein oxidation was measured. The prooxidant site was localized to a region containing His426 because CpH426A almost completely lacked prooxidant activity whereas the other mutants expressed normal activity. These observations support the hypothesis that Cu bound at specific sites on protein surfaces can cause oxidative damage to macromolecules in their environment. Cp may serve as a model protein for understanding mechanisms of oxidant damage by copper-containing (or -binding) proteins such as Cu, Zn superoxide dismutase, and amyloid precursor protein.

A herpes simplex virus 1 recombinant lacking the glycoprotein G coding sequences is defective in entry through apical surfaces of polarized epithelial cells in culture and in vivo

During infection of a new host, the first surfaces encountered by herpes simplex viruses are the apical membranes of epithelial cells of mucosal surfaces. These cells are highly polarized, and the protein composition of their apical and basolateral membranes are very different, so that different viral entry pathways have evolved for each surface. To determine whether the viral glycoprotein G (gG) is specifically required for efficient infection of a particular surface of polarized cells, apical and basal surfaces were infected with wild-type virus or a gG deletion mutant. After infection of polarized cells in culture, the gG− virus was deficient in infection of apical surfaces but was able to infect cells through basal membranes, replicate, and spread into surrounding cells. The gG-dependent step in apical infection was a stage beyond attachment. After in vivo infection of apical surfaces of epithelial cells of nonscarified mouse corneas, infection by glycoprotein C− or gG− virus was considerably reduced as compared with that observed after infection with wild-type virus. In contrast, when corneas were scarified, allowing virus access to other cell surfaces, the gG and glycoprotein C deletion mutants infected eyes as efficiently as wild-type viruses. A secondary mutation allowing infection of apical surfaces by gG− virus arose readily during passage of the virus in nonpolarized cells, indicating that either the gG-dependent step of apical infection can be bypassed or that another viral protein can acquire the same function.

Affinity modulation of small-molecule ligands by borrowing endogenous protein surfaces

A general strategy is described for improving the binding properties of small-molecule ligands to protein targets. A bifunctional molecule is created by chemically linking a ligand of interest to another small molecule that binds tightly to a second protein. When the ligand of interest is presented to the target protein by the second protein, additional protein–protein interactions outside of the ligand-binding sites serve either to increase or decrease the affinity of the binding event. We have applied this approach to an intractable target, the SH2 domain, and demonstrate a 3-fold enhancement over the natural peptide. This approach provides a way to modulate the potency and specificity of biologically active compounds.

Measuring the forces involved in polyvalent adhesion of uropathogenic Escherichia coli to mannose-presenting surfaces

Mechanisms of bacterial pathogenesis have become an increasingly important subject as pathogens have become increasingly resistant to current antibiotics. The adhesion of microorganisms to the surface of host tissue is often a first step in pathogenesis and is a plausible target for new antiinfective agents. Examination of bacterial adhesion has been difficult both because it is polyvalent and because bacterial adhesins often recognize more than one type of cell-surface molecule. This paper describes an experimental procedure that measures the forces of adhesion resulting from the interaction of uropathogenic Escherichia coli to molecularly well defined models of cellular surfaces. This procedure uses self-assembled monolayers (SAMs) to model the surface of epithelial cells and optical tweezers to manipulate the bacteria. Optical tweezers orient the bacteria relative to the surface and, thus, limit the number of points of attachment (that is, the valency of attachment). Using this combination, it was possible to quantify the force required to break a single interaction between pilus and mannose groups linked to the SAM. These results demonstrate the deconvolution and characterization of complicated events in microbial adhesion in terms of specific molecular interactions. They also suggest that the combination of optical tweezers and appropriately functionalized SAMs is a uniquely synergistic system with which to study polyvalent adhesion of bacteria to biologically relevant surfaces and with which to screen for inhibitors of this adhesion.

Biochemical evolution II: Origin of life in tubular microstructures on weathered feldspar surfaces

Mineral surfaces were important during the emergence of life on Earth because the assembly of the necessary complex biomolecules by random collisions in dilute aqueous solutions is implausible. Most silicate mineral surfaces are hydrophilic and organophobic and unsuitable for catalytic reactions, but some silica-rich surfaces of partly dealuminated feldspars and zeolites are organophilic and potentially catalytic. Weathered alkali feldspar crystals from granitic rocks at Shap, north west England, contain abundant tubular etch pits, typically 0.4–0.6 μm wide, forming an orthogonal honeycomb network in a surface zone 50 μm thick, with 2–3 × 106 intersections per mm2 of crystal surface. Surviving metamorphic rocks demonstrate that granites and acidic surface water were present on the Earth’s surface by ∼3.8 Ga. By analogy with Shap granite, honeycombed feldspar has considerable potential as a natural catalytic surface for the start of biochemical evolution. Biomolecules should have become available by catalysis of amino acids, etc. The honeycomb would have provided access to various mineral inclusions in the feldspar, particularly apatite and oxides, which contain phosphorus and transition metals necessary for energetic life. The organized environment would have protected complex molecules from dispersion into dilute solutions, from hydrolysis, and from UV radiation. Sub-micrometer tubes in the honeycomb might have acted as rudimentary cell walls for proto-organisms, which ultimately evolved a lipid lid giving further shelter from the hostile outside environment. A lid would finally have become a complete cell wall permitting detachment and flotation in primordial “soup.” Etch features on weathered alkali feldspar from Shap match the shape of overlying soil bacteria.

Heterogeneous transcription of an indoleacetic acid biosynthetic gene in Erwinia herbicola on plant surfaces

We investigated the spatial pattern of expression of ipdC, a plant inducible gene involved in indoleacetic acid biosynthesis in Erwinia herbicola, among individual cells on plants to gain a better understanding of the role of this phenotype in the epiphytic ecology of bacteria and the factors involved in the regulation of ipdC. Nonpathogenic E. herbicola strain 299R harboring a transcriptional fusion of ipdC to gfp was inoculated onto bean plants, recovered from individual leaves 48 h after inoculation, and subjected to fluorescence in situ hybridization using a 16S rRNA oligonucleotide probe specific to strain 299R. Epifluorescence images captured through a rhodamine filter were used to distinguish the 5carboxytetramethylrhodamine-labeled cells of strain 299R from other leaf microflora. Quantification of the green fluorescence intensity of individual cells by analysis of digital images revealed that about 65% of the 299R cells recovered from bean leaves had higher ipdC expression than in culture. Additionally, 10% of the cells exhibited much higher levels of green fluorescence than the median fluorescence intensity, indicating that they are more heterogeneous with respect to ipdC expression on plants than in culture. Examination of 299R cells in situ on leaf surfaces by confocal laser scanning microscopy after fluorescence in situ hybridization of cells on leaf samples showed that even cells that were in close proximity exhibited dramatically different green fluorescence intensities, and thus, were in a physical or chemical microenvironment that induced differential expression of ipdC.

Designing surfaces that kill bacteria on contact

Poly(4-vinyl-N-alkylpyridinium bromide) was covalently attached to glass slides to create a surface that kills airborne bacteria on contact. The antibacterial properties were assessed by spraying aqueous suspensions of bacterial cells on the surface, followed by air drying and counting the number of cells remaining viable (i.e., capable of growing colonies). Amino glass slides were acylated with acryloyl chloride, copolymerized with 4-vinylpyridine, and N-alkylated with different alkyl bromides (from propyl to hexadecyl). The resultant surfaces, depending on the alkyl group, were able to kill up to 94 ± 4% of Staphylococcus aureus cells sprayed on them. A surface alternatively created by attaching poly(4-vinylpyridine) to a glass slide and alkylating it with hexyl bromide killed 94 ± 3% of the deposited S. aureus cells. On surfaces modified with N-hexylated poly(4-vinylpyridine), the numbers of viable cells of another Gram-positive bacterium, Staphylococcus epidermidis, as well as of the Gram-negative bacteria Pseudomonas aeruginosa and Escherichia coli, dropped more than 100-fold compared with the original amino glass. In contrast, the number of viable bacterial cells did not decline significantly after spraying on such common materials as ceramics, plastics, metals, and wood.

Functional and structural mapping of human cerebral cortex: Solutions are in the surfaces

The human cerebral cortex is notorious for the depth and irregularity of its convolutions and for its variability from one individual to the next. These complexities of cortical geography have been a chronic impediment to studies of functional specialization in the cortex. In this report, we discuss ways to compensate for the convolutions by using a combination of strategies whose common denominator involves explicit reconstructions of the cortical surface. Surface-based visualization involves reconstructing cortical surfaces and displaying them, along with associated experimental data, in various complementary formats (including three-dimensional native configurations, two-dimensional slices, extensively smoothed surfaces, ellipsoidal representations, and cortical flat maps). Generating these representations for the cortex of the Visible Man leads to a surface-based atlas that has important advantages over conventional stereotaxic atlases as a substrate for displaying and analyzing large amounts of experimental data. We illustrate this by showing the relationship between functionally specialized regions and topographically organized areas in human visual cortex. Surface-based warping allows data to be mapped from individual hemispheres to a surface-based atlas while respecting surface topology, improving registration of identifiable landmarks, and minimizing unwanted distortions. Surface-based warping also can aid in comparisons between species, which we illustrate by warping a macaque flat map to match the shape of a human flat map. Collectively, these approaches will allow more refined analyses of commonalities as well as individual differences in the functional organization of primate cerebral cortex.

Mineral surfaces and bioavailability of heavy metals: A molecular-scale perspective

There is a continual influx of heavy metal contaminants and pollutants into the biosphere from both natural and anthropogenic sources. A complex variety of abiotic and biotic processes affects their speciation and distribution, including adsorption onto and desorption from mineral surfaces, incorporation in precipitates or coprecipitates, release through the dissolution of minerals, and interactions with plants and microbes. Some of these processes can effectively isolate heavy metals from the biosphere, whereas others cause their release or transformation to different species that may be more (or less) bioavailable and/or toxic to organisms. Here we focus on abiotic adsorption and precipitation or coprecipitation processes involving the common heavy metal contaminant lead and the metalloids arsenic and selenium in mine tailings and contaminated soils. We have used extremely intense x-rays from synchrotron sources and a structure-sensitive method known as x-ray absorption fine structure (XAFS) spectroscopy to determine the molecular-level speciation of these elements at concentrations of 50 to several thousand ppm in the contaminated environmental samples as well as in synthetic sorption samples. Our XAFS studies of As and Pb in the mine tailings show that up to 50% of these contaminants in the samples studied may be present as adsorbed species on mineral surfaces, which makes them potentially more bioavailable than when present in sparingly soluble solid phases. Our XAFS studies of Se(VI) sorption on Fe2+-containing sulfates show that this element undergoes redox reactions that transform it into less bioavailable and less toxic species. This type of information on molecular-level speciation of heavy metal and metalloid contaminants in various environmental settings is needed to prioritize remediation efforts and to assess their potential hazard to humans and other organisms.

Biochemical evolution III: Polymerization on organophilic silica-rich surfaces, crystal–chemical modeling, formation of first cells, and geological clues

Catalysis at organophilic silica-rich surfaces of zeolites and feldspars might generate replicating biopolymers from simple chemicals supplied by meteorites, volcanic gases, and other geological sources. Crystal–chemical modeling yielded packings for amino acids neatly encapsulated in 10-ring channels of the molecular sieve silicalite-ZSM-5-(mutinaite). Calculation of binding and activation energies for catalytic assembly into polymers is progressing for a chemical composition with one catalytic Al–OH site per 25 neutral Si tetrahedral sites. Internal channel intersections and external terminations provide special stereochemical features suitable for complex organic species. Polymer migration along nano/micrometer channels of ancient weathered feldspars, plus exploitation of phosphorus and various transition metals in entrapped apatite and other microminerals, might have generated complexes of replicating catalytic biomolecules, leading to primitive cellular organisms. The first cell wall might have been an internal mineral surface, from which the cell developed a protective biological cap emerging into a nutrient-rich “soup.” Ultimately, the biological cap might have expanded into a complete cell wall, allowing mobility and colonization of energy-rich challenging environments. Electron microscopy of honeycomb channels inside weathered feldspars of the Shap granite (northwest England) has revealed modern bacteria, perhaps indicative of Archean ones. All known early rocks were metamorphosed too highly during geologic time to permit simple survival of large-pore zeolites, honeycombed feldspar, and encapsulated species. Possible microscopic clues to the proposed mineral adsorbents/catalysts are discussed for planning of systematic study of black cherts from weakly metamorphosed Archaean sediments.

Cation-pi interactions in aromatics of biological and medicinal interest: electrostatic potential surfaces as a useful qualitative guide.

The cation-pi interaction is an important, general force for molecular recognition in biological receptors. Through the sidechains of aromatic amino acids, novel binding sites for cationic ligands such as acetylcholine can be constructed. We report here a number of calculations on prototypical cation-pi systems, emphasizing structures of relevance to biological receptors and prototypical heterocycles of the type often of importance in medicinal chemistry. Trends in the data can be rationalized using a relatively simple model that emphasizes the electrostatic component of the cation-pi interaction. In particular, plots of the electrostatic potential surfaces of the relevant aromatics provide useful guidelines for predicting cation-pi interactions in new systems.

Controlling cell attachment on contoured surfaces with self-assembled monolayers of alkanethiolates on gold.

This paper describes a method based on experimentally simple techniques--microcontact printing and micromolding in capillaries--to prepare tissue culture substrates in which both the topology and molecular structure of the interface can be controlled. The method combines optically transparent contoured surfaces with self-assembled monolayers (SAMs) of alkanethiolates on gold to control interfacial characteristics; these tailored interfaces, in turn, control the adsorption of proteins and the attachment of cells. The technique uses replica molding in poly(dimethylsiloxane) molds having micrometer-scale relief patterns on their surfaces to form a contoured film of polyurethane supported on a glass slide. Evaporation of a thin (< 12 nm) film of gold on this surface-contoured polyurethane provides an optically transparent substrate, on which SAMs of terminally functionalized alkanethiolates can be formed. In one procedure, a flat poly(dimethylsiloxane) stamp was used to form a SAM of hexadecanethiolate on the raised plateaus of the contoured surface by contact printing hexadecanethiol [HS(CH2)15CH3]; a SAM terminated in tri(ethylene glycol) groups was subsequently formed on the bare gold remaining in the grooves by immersing the substrate in a solution of a second alkanethiol [HS(CH2)11(OCH2CH2)3OH]. Then this patterned substrate was immersed in a solution of fibronectin, the protein adsorbed only on the methyl-terminated plateau regions of the substrate [the tri(ethylene glycol)-terminated regions resisted the adsorption of protein]; bovine capillary endothelial cells attached only on the regions that adsorbed fibronectin. A complementary procedure confined protein adsorption and cell attachment to the grooves in this substrate.