Ptychogyliauchen, a new genus of Gyliauchenidae (Platyhelminthes: Digenea) from siganid fishes of the Indo-West Pacific

We propose a new genus of the Gyliauchenidae Fukui, 1929 ( Digenea), Ptychogyliauchen, gen. nov., for four new species that infect Indo-West Pacific siganid fishes. Ptychogyliauchen, gen. nov. is a morphologically distinctive genus, diagnosed principally by the presence of a highly convoluted oesophagus, which generally exceeds the total body length of the worm, and by the unusual folded structure of the ejaculatory duct. Ptychogyliauchen thetidis, sp. nov. is designated as the type species, and is described from the intestine of Siganus punctatus (Siganidae) from Heron Island, Great Barrier Reef, Queensland, Australia. Ptychogyliauchen himinglaeva, sp. nov. is described from the intestine of Siganus corallinus ( Siganidae) from Lizard Island, Great Barrier Reef, Queensland, Australia. Ptychogyliauchen leucothea, sp. nov. is described from the intestine of S. argenteus, and further recorded from S. fuscescens, off Ningaloo, Western Australia, Australia. Ptychogyliauchen thistilbardi, sp. nov. is described from the intestine of S. doliatus from Noumea, New Caledonia, and is also found in S. argenteus, S. canaliculatus, S. corallinus and S. spinus from Noumea, New Caledonia, and Moorea, Tahiti, French Pacific. Ptychogyliauchen thistilbardi, sp. nov. also occurs in the intestine of Chaetodon citrinellus (Chaetodontidae) from Moorea. A key to species is provided. All species have been described following morphological examination using light microscopy, and specimens of P. thetidis, sp. nov., P. leucothea, sp. nov. and P. thistilbardi, sp. nov. have been characterised using molecular methods. Sequences were obtained for a combination of nuclear ribosomal (28S (D1-D3) and ITS2) and mitochondrial (ND1) genes. A phylogenetic analysis of sequenced specimens of Ptychogyliauchen, gen. nov. was conducted using species of Petalocotyle Ozaki, 1934 for outgroup comparison. This analysis, based on alignments of the ITS2 and 28S (D1-D3) rDNA genes, supports monophyly of the geographically widespread P. thistilbardi, sp. nov., which is known from both siganid and chaetodontid hosts. We discuss the taxonomy of the genus and the host associations of each species and the group.

Species of Lecithocladium Luhe, 1901 (Digenea, Hemiuridae) from Australian marine fishes, with a description of a new species from various hosts off eastern Australia

Lecithocladium moretonense sp. nov. is described from Monodactylus argenteus (type-host), Abudefduf sordidus, A. whitleyi, Herklotsichthys castelnaui, Lutjanus russelli, Platycephalus indicus, Rhabdosargus sarba, Siganus nebulosus and Scorpis lineolata from Moreton Bay, southern Queensland, and Acanthopagrus australis from off northern New South Wales. It differs from most Lecithocladium species in having a subglobular oral sucker and pharynx. Other distinguishing features are the thin-walled recurved seminal vesicle and the pars prostatica coiling over the seminal vesicle to the level of the anterior testis. Lecithocladium megalaspis Yamaguti, 1953 from Alepes apercna, Moreton Bay and L. angustiovum Yamaguti, 1953 from Scomber australasicus, Fremantle, Western Australia, are also reported, illustrated and measured.

First record from Australia of the Cretaceous fern genus Tempskya and the description of a new species, T judithae

Silicified fragments of false-trunks of the fern, Tempskya judithae sp. nov., are described from lower Cretaceous (latest Albian) sediments near Winton, central-western Queensland. The species is characterised by a three-layered sclerenchymatous cortex and a two-layered pith of sclerenchyma cells. In possessing these characters, T judithae is more similar to T readii than to other species of Tempskya. However, the Australian species differs from T readii in the abaxial shape of the petiole xylem trace (concave in T judithae, convex in T readii) and in symmetry attributes of the leaf-bases within the false-trunk (random in T judithae and radially symmetrical in T readii). T judithae is the first record of Tempskya from Australia and the second from Gondwana; the known distribution range of the genus embraces a broad area in mid-high latitudinal regions of Laurasia and the Gondwana record now comprises Australia and Argentina. Ecological signals of plant fossil assemblages recorded from the Australian sediments are in accord with flood plain habitats and a temperate climatic regime. (c) 2004 Elsevier B.V. All rights reserved.

Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography

The acetate-utilizing microbial consortium in a full-scale activated sludge process was investigated without prior enrichment using stable isotope probing (SIP). [C-13]acetate was used in SIP to label the DNA of the denitrifiers. The [C-13]DNA fraction that was extracted was subjected to a full-cycle rRNA analysis. The dominant 16S rRNA gene phylotypes in the C-13 library were closely related to the bacterial families Comamonadaceae and Rhodocyclaceae in the class Betaproteobacteria. Seven oligonucleotide probes for use in fluorescent in situ hybridization (FISH) were designed to specifically target these clones. Application of these probes to the sludge of a continuously fed denitrifying sequencing batch reactor (CFDSBR) operated for 16 days revealed that there was a significant positive correlation between the CFDSBR denitrification rate and the relative abundance of all probe-targeted bacteria in the CFDSBR community. FISH-microautoradiography demonstrated that the DEN581 and DEN124 probe-targeted cells that dominated the CFDSBR were capable of taking Up [C-14] acetate under anoxic conditions. Initially, DEN444 and DEN1454 probe-targeted bacteria also dominated the CFDSBR biomass, but eventually DEN581 and DEN124 probe-targeted bacteria were the dominant bacterial groups. All probe-targeted bacteria assessed in this study were denitrifiers capable of utilizing acetate as a source of carbon. The rapid increase in the number of organisms positively correlated with the immediate increase in denitrification rates observed by plant operators when acetate is used as an external source of carbon to enhance denitrification. We suggest that the impact of bacteria on activated sludge subjected to intermittent acetate supplementation should be assessed prior to the widespread use of acetate in the waste-water industry to enhance denitrification.

Structure of a cellulose degrading bacterial community during anaerobic digestion

It is widely accepted that cellulose is the rate-limiting substrate in the anaerobic digestion of organic solid wastes and that cellulose solubilisation is largely mediated by surface attached bacteria. However, little is known about the identity or the ecophysiology of cellulolytic microorganisms from landfills and anaerobic digesters. The aim of this study was to investigate an enriched cellulolytic microbial community from an anaerobic batch reactor. Chemical oxygen demand balancing was used to calculate the cellulose solubilisation rate and the degree of cellulose solubilisation. Fluorescence in situ hybridisation (FISH) was used to assess the relative abundance and physical location of three groups of bacteria belonging to the Clostridium lineage of the Firmicutes that have been implicated as the dominant cellulose degraders in this system. Quantitation of the relative abundance using FISH showed that there were changes in the microbial community structure throughout the digestion. However, comparison of these results to the process data reveals that these changes had no impact on the cellulose solubilisation in the reactor. The rate of cellulose solubilisation was approximately stable for much of the digestion despite changes in the cellulolytic population. The solubilisation rate appears to be most strongly affected by the rate of surface area colonisation and the biofilm architecture with the accepted model of first order kinetics due to surface area limitation applying only when the cellulose particles are fully covered with a thin layer of cells. (c) 2005 Wiley Periodicals, Inc.

Archaeal diversity in two thermophilic chalcopyrite bioleaching reactors

This study used a culture-independent molecular approach to investigate the archaeal community composition of thermophilic bioleaching reactors. Two culture samples, MTC-A and MTC-B, grown with different concentrations of chalcopyrite (CuFeS2), a copper sulfidic ore, at a temperature of 78 degrees C and pH 1.6 were studied. Phylogenetic analysis of the 16S rRNA genes revealed that both cultures consisted of Archaea belonging to the Sulfolobales. The 16S rRNA gene clone library of MTC-A grown with 4% (w/v) chalcopyrite was dominated by a unique phylotype related to Sulfolobus shibatae (69% of total clones). The remaining clones were affiliated with Stygiolobus azoricus (11%), Metallosphaera sp. J1 (8%), Acidianus infernus (2%), and a novel phylotype related to Sulfurisphaera ohwakuensis (10%). In contrast, the clones from MTC-B grown with 12% (w/v) chalcopyrite did not appear to contain Sulfolobus shibatae-like organisms. Instead the bioleaching consortium was dominated by clones related to Sulfurisphaera ohwakuensis (73.9% of total clones). The remaining microorganisms detected were similar to those found in MTC-A.

Genetic uniformity of international isolates of Leifsonia xyli subsp xyli, causal agent of ratoon stunting disease of sugarcane

An international collection of the sugarcane ratoon stunting disease pathogen, Leifsonia xyli subsp. xyli, was analysed to assess genetic diversity. DNA fingerprinting using BOX primers was performed on 105 isolates, comprising 65 Australian isolates and an additional 40 isolates from Indonesia (n = 8), Japan (n = 1), USA (n = 3), Brazil (n = 2), Mali (n = 2), Zimbabwe (n = 13), South Africa (n = 9) and Reunion (n = 2). Sixty-two of these isolates were also screened using ERIC primers. No variation was found among any of the isolates. The intergenic spacer (IGS) region of the ribosomal RNA genes from 54 isolates was screened for sequence variation using single-stranded conformational polymorphism (SSCP), but none was observed. Direct sequencing of the IGS from a subset of nine isolates, representing all of the countries sampled in this study, confirmed the results of the SSCP analysis. Likewise, no sequence variation was found in the 16S ribosomal RNA genes of the same subset. Four Colombian isolates from sugarcane, morphologically similar to L. xyli subsp. xyli, were putatively shown to be an undescribed Agrococcus species of unknown pathogenicity. The lack of genetic variation among L. xyli subsp. xyli isolates, independent of time of sampling, cultivar of isolation, or country of origin, suggests the worldwide spread of a single pathogenic clone, and further suggests that sugarcane cultivars resistant to ratoon stunting disease in one area should retain this property in other regions.

Microvertebrate assemblages from the Upper Silurian of Cornwallis Island, Arctic Canada

Microvertebrate assemblages from four Upper Silurian (?Ludlow-Pridoli) localities on Cornwallis Island, Arctic Canada, comprise mainly scales, plus dentition cones and jaw fragments from ischnacanthid acanthodians, with rare scales assigned to heterostracan Lepidaspis? sp., ?chondrichthyan Arauzia? sp., and Placodermi? gen. et sp. indet. Most of the scales in sample C-11460 are assigned to the poracanthodid acanthodian Poracanthodes canadensis sp.nov., which shows closest affinity to Poracanthodes punctatus Brotzen variants from the Baltic Pridoli. The flank scales of the new species resemble those of P. punctatus s.s. (Silurian variant; the zone fossil for the late Pridoli in the Standard Silurian microvertebrate scheme), with their superposed crown growth zones, rows of small pores aligned with the underlying zones, number of radial canals, and arcade canals connecting these radial canals. They differ in having numerous anterior crown riblets, zig-zag rather than straight crown pore rows, and V-shaped arcade canals.

Five new species of yeasts from fresh water and marine habitats in the Florida Everglades

Yeast populations in the Shark River Slough of the Florida Everglades, USA, were examined during a 3-year period (2002–2005) at six locations ranging from fresh water marshes to marine mangroves. Seventy-four described species (33 ascomycetes and 41 basidiomycetes) and an approximately equal number of undescribed species were isolated during the course of the investigation. Serious human pathogens, such as Candida tropicalis, were not observed, which indicates that their presence in coastal waters is due to sources of pollution. Some of the observed species were widespread throughout the fresh water and marine habitats, whereas others appeared to be habitat restricted. Species occurrence ranged from prevalent to rare. Five representative unknown species were selected for formal description. The five species comprise two ascomycetes: Candida sharkiensis sp. nov. (CBS 11368T) and Candida rhizophoriensis sp. nov. (CBS 11402T) (Saccharomycetales, Metschnikowiaceae), and three basidiomycetes: Rhodotorula cladiensis sp. nov. (CBS 10878T) in the Sakaguchia clade (Cystobasidiomycetes), Rhodotorula evergladiensis sp. nov. (CBS 10880T) in the Rhodosporidium toruloides clade (Microbotryomycetes, Sporidiobolales) and Cryptococcus mangaliensis sp. nov. (CBS 10870T) in the Bulleromyces clade (Agaricomycotina, Tremellales).

Morphology and Typification of Mastogloia Smithii and M. Lacustris, with Descriptions of Two New Species from the Florida Everglades and the Caribbean Region

The names Mastogloia smithii Thwaites ex Smith and M. smithii var. lacustris Grunow have been attributed to a variety of related diatom morphologies, partly due to the poor availability of type material and complicated nomenclatural history. The history is detailed, clarifying the type morphologies of M. smithii and reconfirming a neglected elevation of M. smithii var. lacustris to M. lacustris (Grunow) Grunow. Populations reported as M. smithii and M. lacustris from the temperate zone (Ontario, Canada and Iowa and Michigan, USA), karstic wetlands of the subtropical Everglades (Florida, USA) and the tropics (Jamaica, Mexico and Belize) are compared with each other. Based on morphological differences including density of partecta, striae and areolae, M. calcarea sp. nov. and M. pseudosmithii sp. nov. are described from the Everglades and the Caribbean region, and a lectotype of M. smithii and a neotype of M. lacustris are designated.

Entomobryoidea e Symphypleona (Collembola, Hexapoda) em remanescentes de Mata Atlântica do Estado Do Rio Grande do Norte

Colêmbolos são pequenos artrópodes extremamente abundantes na natureza. São semelhantes a insetos em seu padrão de tagmose, ecologicamente muito importantes e podem ser usados como bioindicadores. Mais de 8.300 esp��cies já foram descritas no mundo, mas se estima que a riqueza real corresponda a um número muito maior. A Mata Atlântica corresponde ao domínio fitogeográfico mais alterado pela ação antrópica no Brasil, restando menos de 8,5% de sua cobertura original. No Rio Grande do Norte a Mata Atlântica cobre apenas 0,27% do território do Estado. Assim, considerando a importância de se conhecer a fauna de Collembola, sobretudo num ambiente ameaçado como a Mata Atlântica, este trabalho objetivou estudar a riqueza de colêmbolos Entomobryoidea e Symphypleona ocorrentes em dois remanescentes de Mata Atlântica do Rio Grande do Norte através de coletas ativas com aspirador entomológico e passivas com pitfall, durante os períodos de chuva e seca. Foram identificadas 22 esp��cies de colêmbolos, sendo que destas 19 (mais de 85% do total) são novas para a ciência, incluindo um novo gênero da família Sminthuridae. As coletas realizadas no período chuvoso apresentaram praticamente o dobro de esp��cies em relação às realizadas no período seco. Este fato possivelmente está associado à dependência dos colêmbolos de umidade, assim como estratégias de resistência a período secos. São descritas quatro novas esp��cies, incluindo o novo gênero (Trogolaphysa sp.nov., Gen.nov. sp.nov., Szeptyckitheca sp.nov. e Sminthurinus sp.nov.). Este expressivo número de esp��cies novas identificadas, os novos registros para o gêneros e famílias para a Mata Atlântica do Rio Grande do Norte e a descoberta de um novo gênero corroboram o pressuposto que motivou este trabalho: o Rio Grande do Norte apresenta uma fauna de Collembola desconhecida e potencialmente diversificada. Além disso, foram geradas informações importantes sobre a morfologia das esp��cies descritas, que por sua vez são de grande importância para a sistemática dos Collembola. O novo gênero descrito faz parte de um visível subgrupo dentro da família Sminthuridae (aqueles com o unguis com cavidade) que aparentemente tem potencial para ser reconhecido futuramente em alguma categoria taxonômica supragenérica.

Descrição de novas esp��cies de Entomobryoidea, Womersley, 1934 (Collembola, Hexapoda) em remanescentes urbanos de mata atlântica no Estado do Rio Grande do Norte

Springtails are commonly recognized microarthropods edaphic environments. Among the most common (and most visible) forms of these animals are the Entomobryoidea, one of the most diverse groups of springtails. Although more than 8,300 species of Collembola are registered on the globe, in Brazil a little over 310 species are recorded, mostly in the Southeast. In the Northeast, particularly in Rio Grande do Norte, these records are still reduced, even in the Atlantic Forest domain for this admittedly diverse fauna and specifically, for Entomobryoidea. This study aimed to describe new species of Entomobryoidea in urban remnants of Atlantic Forest in Rio Grande do Norte, specifically in Parque das Dunas, Natal in the Environmental Protection Area Genipabu, Extremoz. The collections were made in the months July and August 2012 and January and February 2013, using entomological vacuums and plastic trays. The specimens were identified in the laboratory and described in detail by looking at the literature. In this paper four new species were described Entomobryidae family: Entomobrya sp. nov. 1, Seira sp. nov. 1, Seira sp. nov. 2 and Trogolaphysa sp. nov. 1. Seira sp. nov. 1 has clear similarities to S. paraibensis, however the chaetotaxy of the mesothorax and abdomen IV distinguishes both species. The number of phylogenetic proximity suggests similarities between species. Seira sp. nov. 2 is characterized by its chaetotaxy, mainly in the 'M' head and his mesothorax. There is possibility of a phylogenetic relationship with S. praiana and S. Potiguara due to some similarities. Entomobrya sp. nov. 1 has little resemblance to Brazilian species, from the point of view of color, however there is for the latter detailing the dorsal chaetotaxy, which might obscure evolutionary relationships of proximity. Even so, the main diagnostic feature Entomobrya sp. nov. 1 compared to other species of the genus is the complexity of the chaetotaxy of the fifth abdominal segment. Descriptions of new species of Collembola, potentially endemic to their habitats of occurrence may help to understand the morphological and evolutionary patterns in the sampled taxa, as well as the preservation of the environments in which they were found.

O gênero Geastrum Pers. (Geastraceae, Basidiomycota): ocorrência, chave taxonômica e descrições de novas esp��cies do Nordeste brasileiro

Geastraceae is a monophyletic family included in the gomphoid-phalloid clade, it is composed only by two genus: Geastrum and Myriostoma. These genus are closely related in their morphology and phylogeny, both showing angiocarpic basidiomata, apical stoma, basidiospores passively released by the bellows mechanism and exoperidium dehiscent in rays, these genus are distinct by the number of stomas and pedicels. Because of dehiscense of exoperidium they are popularly known as “earthstars”. Usually they occur on decomposing leaf-litter and decaying wood. They are, thus, saprophytic, with rare exceptions of ectomycorrhizal species. Geastrum is the most diverse gasteroid genus in Brazil, with an estimated 51 records. However, there are large gaps in the geographic distribution and systematics studies about the Geastrum in this country, especially because of the characteristics found in the Brazilian territory (megadiverse, hotspots and continental size), which makes it a priority area for species inventory. Thus, this work was aimed at realizing inventory of species of Geastrum, which occur in Caatinga and Northeastern Atlantic Rainforest. At least two field expeditions were realized, during about four days on rainy season of 2013 and 2014 in the areas: Reserva Biológica de Guaribas, located in Atlantic Rainforest domain, Paraíba State and Reserva Ecológica Estadual Mata do Pau Ferro, located on “Brejos Paraibanos”, Paraíba State. Furthermore, specimens deposited in the Herbarium of the Universidade Federal do Rio Grande do Norte, which were collected in Parque Nacional Vale do Catimbau, Caatinga of Pernambuco State, were analyzed. The specimens were identified according to analysis of macro and micro morphology based on specific literature. Approximately 400 basidiomata, distributed in 73 exsiccates were analyzed. 21 species were identified, 19 are in specie level, which two are proposed to new species. (Geastrum magnosporum sp. nov. e G. pusillupilosum sp. nov.) and two in genera level (sp. e aff.). We emphasize one new record for Brazil, 12 new records for Paraíba State, four new records for semiarid region in Brazil and six new records to Atlantic Rainforest relicts “Brejo de Altitude”. So, the results improved the knowledge about Geastrum in Paraíba State by 200%, 24 % in Brazilian semiarid region and 55% in Atlantic Rainforest relicts “Brejo de Altitude”, evincing that Northeastern Brazil has high species richness.

(Table 6) Number of specimens of Polymastiidae and Suberitidae spp. found in ANDEEP I and II stations, POLARSTERN cruises ANT-XIX/4 and ANT-XXII/3

The Antarctic deep-water fauna of Polymastiidae and Suberitidae is revised using recently collected material from the Weddell Sea. The former family appeared to be more abundant and diverse than the latter family in the studied area. Seven species within five polymastiid genera and three species within three suberitid genera are described. Relatively high sponge abundance at two stations deeper than 4700 m was mainly constituted by a polymastiid species Radiella ant- arctica sp. nov. Previously, representatives of Radiella have never been found in the Antarctic. An eurybathic species, Polymastia invaginata , well known from the Antarctic and subantarctic, appeared to be especially abundant at less than 1000 m depth. Another eurybathic polymastiid species, Tentorium cf. semisuberites , known for its bipolar distribution, was the third abundant species at the depths between 1000-2600 m, with the highest density found at the deeper stations. Tentorium papillatum , endemic of the Southern Hemisphere, was registered only at a depth of about 1000 m. Other spe- cies studied were less abundant. Astrotylus astrotylus , the representative of the endemic Antarctic genus, was found exclusively deeper than 4500 m, often together with R. antarctica . Acanthopolymastia acanthoxa , the endemic deep- water Antarctic species, was registered at 3000 m. The discovery of suberitid Aaptos robustus sp. nov. at about 2300 m is the first signalization of Aaptos in the Antarctic and at such a considerable depth. The finding of Suberites topsenti deeper than 4700 m is also remarkable. In general the results achieved confirm the high degree of geographical ende- mism of the Antarctic deep-water sponge fauna and the eurybathic distribution of many Antarctic sponge species.

Abundance of organic-walled dinoflagellate cysts in surface sediments from the Atlantic sector of the Southern Ocean (Appendix 2)

Thirty-two surface sediment samples from the Southern Ocean (eastern Atlantic sector), between the Subtropical Front and the Weddell Gyre, were investigated to provide information on the distribution of modern organic-walled dinoflagellate cysts in relation to the oceanic fronts of the Antarctic Circumpolar Current (ACC). A clearly distinguishable distribution pattern was observed in relation to the water masses and fronts of the ACC. The dinoflagellate cysts of species characteristic of open oceanic environments, such as Impagidinium species, are highly abundant around the Subtropical Front, whereas south of this front, cosmopolitan species such as Nematosphaeropsis labyrinthus and the cysts of Protoceratium reticulatum characterise the transition from subtropical to subantarctic surface waters. The subantarctic surface waters are dominated by the cysts of heterotrophic dinoflagellates, such as Protoperidinium spp. and Selenopemphix antarctica. The cysts of Protoperidinium spp. form the dominant part of the assemblages around the Antarctic Polar Front, whereas S. antarctica concentrations increase further to the south. The presence of S. antarctica in sediments of the Maud Rise, a region of seasonal sea-ice cover, reflects its tolerance for low temperatures and sea-ice cover. A previously undescribed species, Cryodinium meridianum gen. nov. sp. nov., has a restricted distribution pattern between the Antarctic Polar Front and the ACC-Weddell Gyre Boundary.