Bimolecular quadruplexes and their transitions to higher-order molecular structures detected by ESI-FTICR-MS

Four individual quadruplexes, which are self-assembled in ammonium acetate solution from telomeric sequences of closely related DNA strands - d(G(4)T(4)G(4)), d(G(3)T(4)G(4)), d(G(3)T(4)G(3)), and d(G(4)T(4)G(3)) - have been detected in the gas phase using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS). The bimolecular quadruplexes associate with the same number of NH4+ in the gas phase as NMR shows that they do in solution. The quadruplex structures formed in solution are maintained in the gas phase. Furthermore, the mass spectra show that the bimolecular quadruplexes generated by the strands d(G(3)T(4)G(3)) and d(G(4)T(4)G(3)) are unstable, being converted into trimolecular and tetramolecular structures with increasing concentrations of NH4+ in the solution. Circular dichroism (CD) spectra reveal structural changes during the process of strand stoichiometric transitions, in which the relative orientation of strands in the quadruplexes changes from an antiparallel to a parallel arrangement. Such changes were observed for the strand d(G(4)T(4)G(3)), but not for the strand d(G(3)T(4)G(3)). The present work provides a significant insight into the formation of various DNA quadruplexes, especially the higher-order species.

Order-disorder transition in eicosylated polyethyleneimine comblike polymers

Order-disorder transition (ODT) behavior in eicosylated polyethyleneimine (PEI20C) comblike polymer obtained by grafting n-eicosyl group on polyethyleneimine backbone was systematically investigated by the combination of differential scanning calorimetry (DSC), wide-angle X-ray diffraction (WAXD), Fourier transform infrared (FTIR) spectroscopy as well as solid-state high resolution nuclear magnetic resonance (NMR) spectroscopy. DSC investigations showed two obvious transitions, assigned to the transitions (1) from orthorhombic to hexagonal and (2) from hexagonal to amorphous phase, respectively. These transitions are induced by the variations of alkyl side chain conformation and packing structure with temperature changing, which consequently lead to the destruction of original phase equilibrium. The ODT behavior can also be confirmed by spectroscopic methods like WAXD, FTIR and NMR. The ordered structure and the transition behavior of the alkyl side chains confined by the PEI backbone are obviously different from those of pristine normal alkanes. The transition mechanism of ODT and the origin of the phase transition behavior in PEI20C comblike polymer were discussed in detail in this paper.

High order liquid crystalline structure of poly(11-{[(4 '-heptyloxy-4-biphenylyl)carbonyl]oxy}-1-undecyne)

Liquid crystalline properties of a mesomorphic polyacetylene {-[HC=C(CH2 )(9)OOC-Biph-OC7H15](n)- (PA9EO7), Biph=4-4'-biphenylyl} are investigated by X-ray diffraction, polarizing optical microscope, and transmission electron microscope. Polyacetylene PA9EO7 from solution adopts a sandwich structure, which is a high order smectic phase. The biphenylyl pendants pack in a hexagonal fashion and the distance between two appendages is 4.51 Angstrom. The heptyloxy tails on one polymer backbone overlap with those on the neighboring chain. The nonyl spacer and the heptyloxy tail exhibit a hexagonal packing arrangement with intermolecular distance of 3.24 Angstrom.

Observation of inverted phases in poly(styrene-b-butadiene-b-styrene) triblock copolymer by solvent-induced order-disorder phase transition

We report observation of inverted phases consisting of spheres and/or cylinders of the majority fraction block in a poly(styrene-b-butadiene-b-styrene) (SBS) triblock copolymer by solvent-induced order-disorder phase transition (ODT). The SBS sample has a molecular weight of 140K Da and a polystyrene (PS) weight fraction of 30%. Tapping mode atomic force microscopy (AFM) and transmission electron microscopy (TEM) were utilized to study the copolymer microstructure of a set of solution-cast SBS films dried with different solvent evaporation rates, R. The control with different R leads to kinetic frozen-in of microstructures corresponding to a different combination parameter chi (eff)Z of the drying films (where chi (eff) is the effective interaction parameter of the polymer solution in the cast film and Z the number of "blobs" of size equal to the correlation length one block copolymer chain contains), for which faster evaporation rates result in microstructures of smaller chi (eff)Z. As R was decreased from rapid evaporations (similar to0.1 mL/h), the microstructure evolved from a totally disordered one sequentially to inverted phases consisting of spheres and then cylinders of polybutadiene (PB) in a PS matrix and finally reached the equilibrium phase, namely cylinders of PS in a PB matrix. We interpret the formation of inverted phases as due to the increased relative importance of entropy as chi (eff)Z is decreased, which may dominate the energy penalty for having a bigger interfacial area between the immiscible blocks in the inverted phases.

Calculation of second-order nonlinear optical coefficients of KTiOPO4 and KTiOAsO4

The second-order nonlinear optical tensor coefficients of both KTiOPO4 (KTP) and KTiOAsO4 (KTA) are calculated from the chemical bond viewpoint. All constituent chemical bonds of both crystals are considered, and contributions of each type of bond to the total linearity and nonlinearity are determined. Calculated results agree satisfactorily with experimental data in both signs and numerical values. The calculation shows that though TiO6 groups and P(1)O-4 or As(1)O-4 groups have relatively larger linear contributions, they can only produce an advantageous environment for KOx (x = 8, 9) groups and P(2)O-4 or As(2)O-4 groups in nonlinear optical contributions. The origin of nonlinearity of KTP family crystals comes from the KOx (x = 8, 9) and P(2)O-4 groups in their crystal structures. Furthermore, the difference in optical nonlinearities of KTP type crystals is analyzed, based on the detailed calculation of nonlinearities of both KTP and KTA. (C) 1999 Academic Press.

Thermally stable interpenetrating polymer networks for second-order nonlinear optical materials

We report several kinds of interpenetrating polymer networks (IPNs) with nonlinear optical (NLO) properties. DMA spectra show that the two components of the IPNs have good compatibility with each other. The NLO materials have good optical transparency. The thermal stability of alignment was improved and the poled order remained very high. (C) 1999 John Wiley & Sons, Inc.

Structure and order of the discotic compound 2,3,6,7,10,11-hexakispentyloxytriphenylene as revealed by diffraction and molecular simulation studies

The aggregate structure of the discotic compound 2,3,6,7,10,11-hexakispentyloxytriphenylene (HPT) was studied both for the crystalline state and the liquid crystalline state by using electron crystallography and a molecular simulation approach. In the crystalline state, HPT was found to adopt an orthorhombic P-2212 space group with cell parameters a = 36.73 Angstrom, b = 27.99 Angstrom and c = 4.91 Angstrom. Molecular packing calculations were conducted to elucidate the molecular conformation and mutual orientational characteristics in the different states. Phase transitions and relationships are discussed from a structural point of view.

Study of molecular order in organo-soluble polyimide thin films

The changes in refractive indices (n(TE) and n(TM)) in a direction normal to the plane of thin films of an organo-soluble polyimide based on 1,4-bis(3,4-dicarboxyphenoxy) benzene dianhydride and 2,2'-dimethyl-4,4'-methylene dianiline were measured by a prism coupler. The results implied that the molecules near the substrate-polyimide interface were much ordered, while those near the polyimide-air interface were less ordered, judging from the variation in the level of negative birefringence with the depth of the films. The molecules are more condensed near the substrate surface, as seen by the average refractive index increasing from the polyimide-air interface to the substrate-polyimide interface, which implies that the condensed states of polyimide molecules change gradually in the depth direction. (C) 1997 Elsevier Science B.V.

Effect of crystal-disrupting chlorohydroquinone on the first-order transitions of poly(aryl ether ketone)s containing biphenyl units

The novel poly(aryl ether ketone)s were synthesized by nucleophilic substitution reactions of 4,4'-difluorobenzophenone with 4,4'-biphenyldiol and chlorohydroquinone. As expected, the copolymers have lower melting transitions than the biphenyldiol-based homopoly(aryl ether ketone) because of the copolymerization effect of the crystal-disrupting monomer chlorohydroquinone. Copolymers containing 50 and 70% biphenyldiol show two first-order transitions which are associated with the crystal-to-liquid crystal transition and the liquid crystal-to-isotropic transition.

A ZINDO-SOS study on the nonlinear second-order optical properties of substituted silanes series molecules

On the basis of ZINDO methods,according to the sum - over - states( SOS) expression, we divise the program for the calculation of nonlinear second - order optical susceptibilities beta(ijk) and study how the different substituents on the phenyl ring attached to the atom silicon influence or; the nonlinear second - order optical properties for substituted silanes series molecules. The property of (CH3)(3)Si is Studied particularly. The effect of length of silica chains on the calculated beta values is studied too. The regularity summarized from calculated results has been explained micromechanically.

A theoretical study on the nonlinear optical second-order properties of azobenzene series molecules

On the basis of AM1 and INDO/CI methods, we devise the program for the calculation of nonlinear second-order optical susceptibilities beta(ijk) and perform systematic theoretical studies on the nonlinear optical second-order properties of azobenzene series molecules, i. e. on the basis of [GRAPHICS] we induced different donors on the left side of phenyl ring, and different accepters on the right side of phenyl ring, and examined the rule of beta variation. The regularity summarized from the calculated results has been explained micromechanically. Finally, a molecule having a big nonlinear second-order optical susceptibility has been designed.

SYNTHESIS OF CROSS-LINKED 2ND-ORDER NONLINEAR-OPTICAL POLYMERS WITH HIGH T-G

Synthesis and characterization of a diamino dihydroxyl azo compound were reported, The crosslinking reaction process of the diamino dihydroxyl azo compound with the biuret of hexamethylene diisocyanate was studied by FTIR, The glass transition temperatures of crosslinked polymers were measured by DSC, The orientation and oriented stability of crosslinked and poled polymers were studied by UV-Vis spectra.

SYNTHESIS AND CHARACTERIZATION OF CROSS-LINKED 2ND-ORDER NONLINEAR-OPTICAL POLYMER

The present paper reports the synthesis of glycidyl monoether of 4-[(p-nitrophenyl) azo] phenol (GMNA) and crosslinking reaction of GMNA with hexamethylene diisocyanate biuret (HDIB). The Tg of crosslinked polymer was investigated by DSC. The orientation and stability of the poled and crosslinked polymer film were studied by UV-Vis spectra and Maker fringe method.