Towards a Flexible Internet Transport Layer Architecture

LANMAN 2016, Rome This work has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 644334 (NEAT). The views expressed are solely those of the authors.

Movements of truncated kinesin fragments with a short or an artificial flexible neck

To investigate the role of the neck domain of kinesin, we used optical trapping nanometry to perform high-resolution measurements of the movements and forces produced by recombinant kinesin fragments in which the neck domains were shortened or replaced by an artificial random coil. Truncated kinesin fragments (K351) that contain a motor domain consisting of ≈340 aa and a short neck domain consisting of ≈11 aa showed fast movement (800 nm/s) and 8-nm steps. Such behavior was similar to that of recombinant fragments containing the full-length neck domain (K411) and to that of native kinesin. Kinesin fragments lacking the short neck domain (K340), however, showed very slow movement (<50 nm/s), as previously reported. Joining an artificial 11-aa sequence that was expected to form a flexible random chain to the motor domain (K340–chain) produced normal fast (≈700 nm/s) and stepwise movement. The results suggest that the neck domain does not act as a rigid lever arm to magnify the structural change at the catalytic domain as has been believed for myosin, but it does act as a flexible joint to guarantee the mobility of the motor domain.

Structure of the recombinant full-length hamster prion protein PrP(29–231): The N terminus is highly flexible

The prion diseases seem to be caused by a conformational change of the prion protein (PrP) from the benign cellular form PrPC to the infectious scrapie form PrPSc; thus, detailed information about PrP structure may provide essential insights into the mechanism by which these diseases develop. In this study, the secondary structure of the recombinant Syrian hamster PrP of residues 29–231 [PrP(29–231)] is investigated by multidimensional heteronuclear NMR. Chemical shift index analysis and nuclear Overhauser effect data show that PrP(29–231) contains three helices and possibly one short β-strand. Most striking is the random-coil nature of chemical shifts for residues 30–124 in the full-length PrP. Although the secondary structure elements are similar to those found in mouse PrP fragment PrP(121–231), the secondary structure boundaries of PrP(29–231) are different from those in mouse PrP(121–231) but similar to those found in the structure of Syrian hamster PrP(90–231). Comparison of resonance assignments of PrP(29–231) and PrP(90–231) indicates that there may be transient interactions between the additional residues and the structured core. Backbone dynamics studies done by using the heteronuclear [1H]-15N nuclear Overhauser effect indicate that almost half of PrP(29–231), residues 29–124, is highly flexible. This plastic region could feature in the conversion of PrPC to PrPSc by template-assisted formation of β-structure.

Population based randomised study of uptake and yield of screening by flexible sigmoidoscopy compared with screening by faecal occult blood testing

Objectives: To compare the feasibility of mass screening by flexible sigmoidoscopy with screening by faecal occult blood testing (Haemoccult) and both tests combined.

The wing of the enhancer-binding domain of Mu phage transposase is flexible and is essential for efficient transposition.

A tetramer of the Mu transposase (MuA) pairs the recombination sites, cleaves the donor DNA, and joins these ends to a target DNA by strand transfer. Juxtaposition of the recombination sites is accomplished by the assembly of a stable synaptic complex of MuA protein and Mu DNA. This initial critical step is facilitated by the transient binding of the N-terminal domain of MuA to an enhancer DNA element within the Mu genome (called the internal activation sequence, IAS). Recently we solved the three-dimensional solution structure of the enhancer-binding domain of Mu phage transposase (residues 1-76, MuA76) and proposed a model for its interaction with the IAS element. Site-directed mutagenesis coupled with an in vitro transposition assay has been used to assess the validity of the model. We have identified five residues on the surface of MuA that are crucial for stable synaptic complex formation but dispensable for subsequent events in transposition. These mutations are located in the loop (wing) structure and recognition helix of the MuA76 domain of the transposase and do not seriously perturb the structure of the domain. Furthermore, in order to understand the dynamic behavior of the MuA76 domain prior to stable synaptic complex formation, we have measured heteronuclear 15N relaxation rates for the unbound MuA76 domain. In the DNA free state the backbone atoms of the helix-turn-helix motif are generally immobilized whereas the residues in the wing are highly flexible on the pico- to nanosecond time scale. Together these studies define the surface of MuA required for enhancement of transposition in vitro and suggest that a flexible loop in the MuA protein required for DNA recognition may become structurally ordered only upon DNA binding.

Considerações sobre os métodos de dimensionamento estrutural de pavimentos com camadas recicladas a frio com espuma de asfalto.

A reciclagem profunda com espuma de asfalto tem sido uma alternativa de sucesso para a restauração de pavimentos degradados. Em relação às soluções tradicionais de reabilitação, como os recapeamentos, tem a vantagem de proporcionar a correção de defeitos em camadas inferiores, com a manutenção ou pequena elevação do greide da pista, além de ganhos ambientais, como um menor consumo de materiais virgens da natureza e redução do volume de material descartado. Entretanto, no Brasil não há método para dimensionamento estrutural para esta tecnologia, o que dificulta seu emprego. Para o desenvolvimento de um procedimento de dimensionamento que contemple este tipo de solução, foram estudados métodos presentes na bibliografia internacional: guia da AASHTO de 1993 e Caltrans, dos EUA, TRL386 e TRL611, da Inglaterra, as duas versões do guia sul-africano TG2 e os métodos oriundos do Austroads, tanto o procedimento interino de 2011 como adaptações de órgãos da Austrália e Nova Zelândia. Observou-se divergência de opiniões quanto ao comportamento do material reciclado com espuma de asfalto. Alguns órgãos e autores consideram o comportamento do mesmo mais próximo às misturas asfálticas, sendo o mecanismo de falha o trincamento, e outros o definem como semelhante a um material granular modificado com alta coesão e ruptura devido às deformações permanentes. Correlaciona-se tal associação ao teor de espuma usualmente utilizado nas obras rodoviárias. Outros aspectos que se destacam para este tipo de base são o ganho de resistência ao longo do tempo devido à cura, mesmo com início da operação da rodovia e a importância da infraestrutura remanescente no dimensionamento. Tais fatos foram corroborados pelos estudos de caso e resultados do trecho experimental construído na Rodovia Ayrton Senna - SP 070, monitorado por meio de ensaios deflectométricos com FWD durante um ano. Como resultado do trabalho, foi proposto um procedimento para o dimensionamento estrutural de pavimentos com camadas recicladas a frio com espuma de asfalto utilizando dados deflectométricos que atende o método do Manual de Pavimentação do Departamento Nacional de Infraestrutura de Transportes (DNIT) e incorpora diferentes aspectos na análise mecanicista. Outras conclusões são a viabilidade técnica a longo prazo da solução mencionada e a importância do controle tecnológico, com ênfase para o monitoramento deflectométrico nos primeiros meses de operação do pavimento para averiguar a evolução da cura do material.

Fénix: a flexible information exchange data model for natural language processing

In this paper we describe Fénix, a data model for exchanging information between Natural Language Processing applications. The format proposed is intended to be flexible enough to cover both current and future data structures employed in the field of Computational Linguistics. The Fénix architecture is divided into four separate layers: conceptual, logical, persistence and physical. This division provides a simple interface to abstract the users from low-level implementation details, such as programming languages and data storage employed, allowing them to focus in the concepts and processes to be modelled. The Fénix architecture is accompanied by a set of programming libraries to facilitate the access and manipulation of the structures created in this framework. We will also show how this architecture has been already successfully applied in different research projects.

Flexible ruthenium oxide-activated carbon cloth composites prepared by simple electrodeposition methods

This work focuses on the preparation of flexible ruthenium oxide containing activated carbon cloth by electrodeposition. Different electrodeposition methods have been used, including chronoamperometry, chronopotentiometry and cyclic voltammetry. The electrochemical properties of the obtained materials have been measured. The results show that the potentiostatic method allows preparing composites with higher specific capacitance than the pristine activated carbon cloth. The capacitance values measured by cyclic voltammetry at 10 mV s−1 and 1 V of potential window were up to 160 and 180 F g−1. This means an improvement of 82% and 100% with respect to the capacitance of the pristine activated carbon cloth. This excellent capacitance enhancement is attributed to the small particle size (4–5 nm) and the three-dimensional nanoporous network of the ruthenium oxide film which allows reaching very high degree of oxide utilization without blocking the pore structure of the activated carbon cloth. In addition, the electrodes maintain the mechanical properties of the carbon cloth and can be useful for flexible devices.

Proyecto FIRST (Flexible Interactive Reading Support Tool): desarrollo de una herramienta para ayudar a personas con autismo mediante la simplificación de textos

El Trastorno de Espectro Autista (TEA) es un trastorno que impide el correcto desarrollo de funciones cognitivas, habilidades sociales y comunicativas en las personas. Un porcentaje significativo de personas con autismo presentan además dificultades en la comprensión lectora. El proyecto europeo FIRST está orientado a desarrollar una herramienta multilingüe llamada Open Book que utiliza Tecnologías del Lenguaje Humano para identificar obstáculos que dificultan la comprensión lectora de un documento. La herramienta ayuda a cuidadores y personas con autismo transformando documentos escritos a un formato más sencillo mediante la eliminación de dichos obstáculos identificados en el texto. En este artículo se presenta el proyecto FIRST así como la herramienta desarrollada Open Book.

Selective SWIFT-R. A Flexible Software-Based Technique for Soft Error Mitigation in Low-Cost Embedded Systems

Commercial off-the-shelf microprocessors are the core of low-cost embedded systems due to their programmability and cost-effectiveness. Recent advances in electronic technologies have allowed remarkable improvements in their performance. However, they have also made microprocessors more susceptible to transient faults induced by radiation. These non-destructive events (soft errors), may cause a microprocessor to produce a wrong computation result or lose control of a system with catastrophic consequences. Therefore, soft error mitigation has become a compulsory requirement for an increasing number of applications, which operate from the space to the ground level. In this context, this paper uses the concept of selective hardening, which is aimed to design reduced-overhead and flexible mitigation techniques. Following this concept, a novel flexible version of the software-based fault recovery technique known as SWIFT-R is proposed. Our approach makes possible to select different registers subsets from the microprocessor register file to be protected on software. Thus, design space is enriched with a wide spectrum of new partially protected versions, which offer more flexibility to designers. This permits to find the best trade-offs between performance, code size, and fault coverage. Three case studies have been developed to show the applicability and flexibility of the proposal.

Time-Precision Flexible Arithmetic Unit

Paper submitted to the XVIII Conference on Design of Circuits and Integrated Systems (DCIS), Ciudad Real, España, 2003.

Calculation Methodology for Flexible Arithmetic Processing

Paper submitted to the IFIP International Conference on Very Large Scale Integration (VLSI-SOC), Darmstadt, Germany, 2003.