Work plan for analytical support of an integrated ecosystem assessment of the California Current Large Marine Ecosystem, FY11 ‐ FY13

NOAA/NCCOS is conducting the following work for the NOAA California Current Integrated Ecosystem Assessment, in support of the NOAA/NMFS Northwest Fisheries Science Center.

Northeast Fisheries Observer Program manual, 2013

The National Marine Fisheries Service (NMFS) Northeast Fisheries Science Center (NEFSC) Fisheries Sampling Branch (FSB) collects, maintains, and distributes data for scientific and management purposes in the northwest Atlantic Ocean. FSB manages three separate but related observer programs: the Northeast Fisheries Observer Program (NEFOP), the Industry Funded Scallop (IFS) Observer Program, and the At Sea Monitoring (ASM) Program. For the purposes of this manual, “observers” refers to any observer/monitor working for the FSB. In 2011, FSB trained and deployed over 200 observers, provided coverage on a variety of fisheries, and completed over 15,000 sea days. Observed trips are required under many of the region's fishery management plans, and for some fisheries by other federal laws and authorities such as Amendment 16 and Framework 44, Magnuson-Stevens Fishery Conservation and Management Act, Marine Mammal Protection Act, the Endangered Species Act, the and the Sustainable Fisheries Act. The purpose of this guide is to provide FSB observers, as well as end users of NEFSC Observer Program data, with a detailed description of each data field collected. In addition to this manual, the NEFSC Observer Program Biological Sampling and Catch Estimation Manual provides summaries and tables intended to enable observers to quickly determine the correct sampling protocols and methods while at sea. This manual represents a revision of the data forms, collection procedures, and protocols described in the 1996 NEFSC Observer Program Manual. For documentation of other changes see Documentation of changes made to the NEFSC Fisheries Observer Program Manual, 2013.

Distribution and abundance of humpback whales (Megaptera novaeangliae) and other marine mammals off the northern Washington coast

We examined the summer distribution of marine mammals off the northern Washington coast based on six ship transect surveys conducted between 1995 and 2002, primarily from the NOAA ship McArthur. Additionally, small boat surveys were conducted in the same region between 1989 and 2002 to gather photographic identification data on humpback whales (Megaptera novaeangliae) and killer whales (Orcinus orca) to examine movements and population structure. In the six years of ship survey effort, 706 sightings of 15 marine mammal species were made. Humpback whales were the most common large cetacean species and were seen every year and a total of 232 sightings of 402 animals were recorded during ship surveys. Highest numbers were observed in 2002, when there were 79 sightings of 139 whales. Line-transect estimates for humpback whales indicated that about 100 humpback whales inhabited these waters each year between 1995 and 2000; in 2002, however, the estimate was 562 (CV= 0.21) whales. A total of 191 unique individuals were identified photographically and mark recapture estimates also indicated that the number of animals increased from under 100 to over 200 from 1995 to 2002. There was only limited interchange of humpback whales between this area and feeding areas off Oregon and California. Killer whales were also seen on every ship survey and represented all known ecotypes of the Pacific Northwest, including southern and northern residents, transients, and offshore-type killer whales. Dall’s porpoise (Phocoenoides dalli) were the most frequently sighted small cetacean; abundance was estimated at 181−291 individuals, except for 2002 when we observed dramatically higher numbers (876, CV= 0.30). Northern fur seals (Callorhinus ursinus) and elephant seals (Mirounga angustirostris) were the most common pinnipeds observed. There were clear habitat differences related to distance offshore and water depth for different species.

Yield- and biomass-per-recruit analysis for rotational fisheries, with an application to the Atlantic sea scallop (Placopecten magellanicus)

A general model for yield-per-recruit analysis of rotational (periodic) fisheries is developed and applied to the sea scallop (Placopecten magellanicus) fishery of the northwest Atlantic. Rotational fishing slightly increases both yield- and biomass-per-recruit for sea scallops at FMAX. These quantities decline less quickly when fishing mortality is increased beyond FMAX than when fishing is at a constant rate. The improvement in biomass-per-recruit appears to be nearly independent of the selectivity pattern but increased size-at-entry can reduce or eliminate the yield-per-recruit advantage of rotation. Area closures and rotational fishing can cause difficulties with the use of standard spatially averaged fishing mortality metrics and reference points. The concept of temporally averaged fishing mortality is introduced as one that is more appropriate for sedentary resources when fishing mortality varies in time and space.

Geographic and temporal patterns in size and maturity of the longfin inshore squid (Loligo pealeii) off the northeastern United States

Analysis of 32 years of standardized survey catches (1967–98) indicated differential distribution patterns for the longfin inshore squid (Loligo pealeii) over the northwest Atlantic U.S. continental shelf, by geographic region, depth, season, and time of day. Catches were greatest in the Mid-Atlantic Bight, where there were significantly greater catches in deep water during winter and spring, and in shallow water during autumn. Body size generally increased with depth in all seasons. Large catches of juveniles in shallow waters off southern New England during autumn resulted from inshore spawning observed during late spring and summer; large proportions of juveniles in the Mid-Atlantic Bight during spring suggest that substantial winter spawning also occurs. Few mature squid were caught in survey samples in any season; the majority of these mature squid were captured south of Cape Hatteras during spring. Spawning occurs inshore from late spring to summer and the data suggest that winter spawning occurs primarily south of Cape Hatteras.

Physiological ecology of juvenile chinook salmon (Oncorhynchus tshawytscha) at the southern end of their distribution, the San Francisco Estuary and Gulf of the Farallones, California

Juvenile chinook salmon, Oncorhynchus tshawytscha, from natal streams in California’s Central Valley demonstrated little estuarine dependency but grew rapidly once in coastal waters. We collected juvenile chinook salmon at locations spanning the San Francisco Estuary from the western side of the freshwater delta—at the confluence of the Sacramento and San Joaquin Rivers—to the estuary exit at the Golden Gate and in the coastal waters of the Gulf of the Farallones. Juveniles spent about 40 d migrating through the estuary at an estimated rate of 1.6 km/d or faster during their migration season (May and June 1997) toward the ocean. Mean growth in length (0.18 mm/d) and weight (0.02 g/d) was insignificant in young chinook salmon while in the estuary, but estimated daily growth of 0.6 mm/d and 0.5 g/d in the ocean was rapid (P≤0.001). Condition (K factor) declined in the estuary, but improved markedly in ocean fish. Total body protein, total lipid, triacylglycerols (TAG), polar lipids, cholesterol, and nonesterified fatty acids concentrations did not change in juveniles in the estuary, but total lipid and TAG were depleted in ocean juveniles. As young chinook migrated from freshwater to the ocean, their prey changed progressively in importance from invertebrates to fish larvae. Once in coastal waters, juvenile salmon appear to employ a strategy of rapid growth at the expense of energy reserves to increase survival potential. In 1997, environmental conditions did not impede development: freshwater discharge was above average and water temperatures were only slightly elevated, within the species’ tolerance. Data suggest that chinook salmon from California’s Central Valley have evolved a strong ecological propensity for a ocean-type life history. But unlike populations in the Pacific Northwest, they show little estuarine dependency and proceed to the ocean to benefit from the upwelling-driven, biologically productive coastal waters.

Validated age and growth of the porbeagle shark (Lamna nasus) in the western North Atlantic Ocean

Growth parameters were estimated for porbeagle shark (Lamna nasus) in the northwest Atlantic Ocean on the basis of vertebral annuli. A total of 578 vertebrae was analyzed. Annuli were validated up to an age of 11 years by using vertebrae from recaptured oxytetracycline-injected and known-age sharks. Males and females grew at similar rates until the size of male sexual maturity, after which the relative growth of the males declined. The growth rate of the females declined in a similar manner at the onset of maturity. Growth curves were consistent with those derived from tag-recapture analyses (GROTAG) of 76 recaptured fish and those based on length-frequency methods with measurements from 13,589 individuals. Von Bertalanffy growth curve parameters (combined sexes) were L∞ = 289.4 cm fork length, K = 0.07 and t0 = –6.06. Maximum age, based on vertebral band pair counts, was 25 and 24 years for males and females, respectively. Longevity calculations, however, indicated a maximum age of 45 to 46 years in an unfished population.

Strong, low frequency (decadal) environmental fluctuations during the 20th century in the North Pacific Ocean, on the Washington coast, and in Puget Sound

At decadal period (10-20 years), dynamic linkage was evident between atmospheric low pressure systems over the North Pacific Ocean and circulation in a Pacific Northwest fjord (Puget Sound). As the Aleutian low pressure center shifts, storms arriving from the North Pacific Ocean deposit varying amounts of precipitation in the mountains draining into the estuarine system; in turn, the fluctuating addition of fresh water changes the density distribution near the fjord basin entrance sill, thereby constraining the fjord's vertical velocity structure. This linkage was examined using time series of 21 environmental parameters from 1899 to 1987. Covariation in the time series was evident because of the strong decadal cycles compared with long-term averages, interannual variability, and seasonal cycles.

Tree-ring records as indicators of air-sea interaction in the northeast Pacific sector

Climate conditions in land areas of the Pacific Northwest are strongly influenced by atmosphere/ocean variability, including fluctuations in the Aleutian Low, Pacific-North American (PNA) atmospheric circulation modes, and the El Niño-Southern Oscillation (ENSO). It thus seems likely that climatically sensitive tree-ring data from these coastal land areas would likewise reflect such climatic parameters. In this paper, tree-ring width and maximum lakewood density chronologies from northwestern Washington State and near Vancouver Island, British Columbia, are compared to surface air temperature and precipitation from nearby coastal and near-coastal land stations and to monthly sea surface temperature (SST) and sea level pressure (SLP) data from the northeast Pacific sector. Results show much promise for eventual reconstruction of these parameters, potentially extending available instrumental records for the northeastern Pacific by several hundred years or more.

中国西北地区分布的几种荒漠植物的生理生态学特性研究

白沙蒿(Artemisia sphaerocephala Krasch.)是中国西北部沙漠的流动及固定沙丘上广泛分布的优势种灌木。瘦果小而轻;借助显微镜和扫描电镜对瘦果的形态结构进行了观察，其种子的种皮与果皮愈合，果皮外层为很厚的粘液层，其粘液层在遇湿后迅速吸水膨胀，其重量增至原来的589倍。在自然生境中，粘液物质将沙粒粘附于瘦果的周围，使瘦果的重量发生变化。瘦果能长时间在水上漂浮，粘液物质有助于种子的萌发和苗的发育。白沙蒿产生三种不同颜色的瘦果，其种子具有不同的萌发速率但最终达到相同的萌发率。瘦果的粘液物质对白沙蒿种子的传播与萌发具有重要的生态意义。白沙蒿种子为需光种子，种子在光下萌发而在暗中受到抑制。种子萌发的适宜温度为250 C，在100 C和300 C萌发速率和萌发率都很低，萌发在50 C受到抑制。种子在沙中被埋越深，其萌发速率和萌发率就越低。在沙平面下2厘米或更深层沙土下出苗率为零。但是，当将种子上层沙土移走，只保留0.5厘米沙土覆盖种子，这些种子的萌发率达到原先就位于沙土下0.5厘米的种子的萌发率，但是后者的萌发速率较高。土壤水分含量越高，从1. 7%到14. 7%，其萌发就越快。土壤水分含量从19.4%起，种子的萌发受到了延迟，苗的发育受到了抑制。 梭梭(Haloxylon ammodendron)是我国西北荒漠中分布的多年生植物，属中亚荒漠植被成分。其种子萌发的最适温度为loo C，亚适宜温度为15-20 0C。从200C起，温度越高，萌发比率越低。种子无论在光下和暗中都能萌发，萌发率无显著性差异。浓度低于0.2 molL的NaCl溶液对萌发的影响不大;但从0.8 mol/L起，萌发率随着浓度增高而降低，直至为零。将在盐溶液中处理9d的种子转移至蒸馏水后，原来较高浓度下的种子具有较高的萌发恢复率。不同浓度下的种子的萌发率和萌发恢复率要比蒸馏水中的低，表明NaCl处理后的部分种子永久地失去萌发力。梭梭的种子为短命种子，在自然状态下，种子的含水量为8.5%，寿命约为10个月。将梭梭种子含水量降至2. 5%和1.4%，其耐贮藏力增强。经过500 C下5天和10天的人工加速老化后，超干种子表现出较强的抗老化能力。与对照相比，超干种子萌发率、根长及活力指数等均显著提高。较低的电导率和较高的脱氢酶活性，说明种子在超干处理后表现出了膜系统的完整性和较高的种子生活力。超干处理既能显著提高梭梭种子的耐贮性，也能有效保持种质的稳定性，是梭梭种质资源保护的重要途径之一。 沙柳（Salix psammophila）是毛乌素沙地流动沙丘和固定沙丘上广泛分布的重要固沙植物。沙柳叶片的光合速率呈现出双峰型的日动态变化，在午后14点出现光合午休现象。蒸腾速率呈现出单峰型的日动态变化，蒸腾在午后15点达到最大。水分利用效率在早晨9点后保持在2.5 μmol C02．mmol-l H20左右。叶片水分亏缺也表现出规律性的变化。从早晨开始，叶片水分亏缺逐渐增强，在18时达到最大值。比较生长季节的不同时期环境因子的变化情况表明，春末的光照强度和气温比夏末高，但土壤水分含量则相反。沙柳在春末的光合速率、蒸腾速率分别是夏末的79%和72.4%，表明水分亏缺是影响沙柳生长发育的主要限制因素。

Modeling North Pacific temperature and pressure changes from coastal tree-ring chronologies

Climate modeling using coastal tree-ring chronologies has yielded the first summer temperature reconstructions for coastal stations along the Gulf of Alaska and the Pacific Northwest. These land temperature reconstructions are strongly correlated with nearby sea surface temperatures, indicating large-scale ocean-atmospheric influences. Significant progress has also been made in modeling winter land temperatures and sea surface temperatures from coastal and shipboard stations. In addition to temperature, the pressure variability center over the central North Pacific Ocean (PAC), which is related to the strength and location of the Aleutian Low pressure system, could be extended using coastal tree rings.

西北干旱区多种植物地理分布与气候的相关性及其可能潜在分布预测

　　作为西部大开发的关键地区，西北干旱区由于地理位置和环境条件的独特性、生态系统的脆弱性以及人类活动的长期干扰，对其周边乃至全国的生态环境有较大的影响，在这一地区研究植物种分布与气候的关系，并模拟预测其可能的潜在分布范围，具有理论上和实践上的重要意义。 　　通过广泛收集了西北干旱区优势种和常见种的地理分布资料，共选择128个植物种，利用Holdridge的生命地带分类系统，计算各植物种的生物温度(BT)、可能蒸散(PE)、降水量(P)及可能蒸散率(PER)，分析植物种与气候的相互关系，并将所有植物种进行经验归纳分类。随后，对这砦植物种及其气候信息进行TWINSPAN定量分类，并与经验分类结果相比较，得出西北干旱区128种植物的生态气候分类，分属于以下几大类型：高寒草甸、森林一草原过渡带、草原（典型草原、荒漠草原）、荒漠（草原化荒漠、荒漠、高寒荒漠）。具体来说，包括以下17个生态气候类型： 1)高寒草甸：异针茅。 2)森林一草原过渡带：牛尾蒿、鬼箭锦鸡儿、沙棘。 3)草原a：沙蒿。 4)草原b：长芒草、百里香（变种）、多叶隐子草、贝加尔针茅、大针茅。 5)草原c：羊茅、小叶锦鸡儿、荒漠锦鸡儿、线叶菊、华北岩黄芪、廿青针茅、碱蒿、内蒙古沙蒿、裂叶蒿、狭叶锦鸡儿、山竹岩黄芪、女蒿、小蓬、两伯利亚杏、沙地柏、角果碱篷、霸王、糙隐子草。 6)草原d：紫狐茅、紫花针茅。 7)草原一荒漠草原a：包括沙竹、琵琶柴、吉尔吉斯针茅。 8)草原一荒漠草原b：华北米蒿、差巴嘎蒿、星星草、长芒针茅、铁竿蒿、柠条锦鸡儿。 9)荒漠草原：沙生冰草、蒙古冰草、羊草、冷蒿、中亚紫菀木、刺旋花、老瓜头、木贼麻黄、西伯利亚白刺、唐古特白刺、戈壁针茅、石生针茅、盐地碱蓬、冰草、蓍状亚菊、油蒿、木蓼、刺针枝蓼、长枝木蓼、中间锦鸡儿、尖叶盐爪爪、黄花琵琶柴、松叶猪毛菜、珍珠猪毛菜、东方针茅、囊果碱蓬、四合木、白滨藜、短脚锦鸡儿。 10)草原化荒漠，荒漠a：川青锦鸡儿、优若藜、苦艾蒿、无芒隐子草、沙冬青、籽蒿、地白蒿、菭草、齿叶白刺、绵刺、盐角草、多枝柽柳、盐生假木贼。 11)草原化荒漠．荒漠b：蒿叶猪毛菜、短花针茅、芨芨草、灌木亚菊、博乐蒿、小蒿、喀什蒿、南山短花菊、盐爪爪、木本猪毛菜、针茅、细枝盐爪爪。 12)草原化荒漠．荒漠c：白梭梭、白羊草、无叶假木贼。 13）干旱荒漠a：戈壁短花菊、荒漠细柄茅、刺蓬、沙生针茅、多花柽柳、细枝柽柳。 14)干旱荒漠b：梭梭柴、铃铛刺、天山猪毛菜、帕米尔麻黄、座花针茅、旱蒿、克氏狐茅、短叶假木贼、准格尔沙蒿、长穗柽柳、刚毛柽柳。 15)高寒荒漠植被：匍生优若藜。 16)干旱荒漠c：粉花蒿、白杆沙拐枣、膜果麻黄、花花柴、灌木紫菀木、裸果木、合头草、塔里木沙拐枣。 17)超干旱荒漠植被：沙拐枣、胡杨、盐穗木、灰杨、盐节木、圆叶盐爪爪。 　　综合分类结果表明：多数植物种的生态气候类型与实际生境相符，但也有少数植物种有明显偏差，主要原因有三点：首先，某些种的分布范围超出了西北干旱区，在东北、华北、甚至全国范围内分布，所计算的植物种的气候范围本身存在局限性;其次，西北干旱区的研究资料如植物种的分布范围、分布点的气象资料等有许多缺失：最后，由于文献中对某些植物种分布范围的描述比较笼统，无法确定其精确的地理分布界限，使得植物种所对应的分类结果与其真正所属的植 被类型有一些偏差。 　　本文还进一步在这128种植物中选取了10种分布明确、资料齐备的代表性植被类型的优势种，根据它们的降水和生物温度指标，模拟预测了它们的可能潜在分布区，包括其主要中心分布区和最大可能分布区，并与实际分布范围进行比较。结果表明．其潜在分布区的分布范围与实际调查所得资料所处范围基本一致，特别是中心分布区的预测图，而最大可能分布区与实际有一定误差。

Changes in the hydrometeorological regime in the Pacific Southwest [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): Selected hydrometeorological (HM) data for the Pacific Northwest and atmospheric and North Pacific sea-surface temperature (SST) data are examined for three successive periods that are subsets of the historical record to estimate if their characteristics have changed.

Changes in mass balance of South Cascade Glacier, North Cascades, 1959 to 1994

EXTRACT (SEE PDF FOR FULL ABSTRACT): Annual, winter, and summer mass balance measurements at South Cascade Glacier in the North Cascade Mountains of Washington State constitute a continuous time series 36 years long, from 1959 to 1994. ... The long-term trends at South Cascade Glacier are decreased winter accumulation and increased summer ablation, neither of which is conducive to glacier growth, so the trend in the Pacific Northwest is clearly away from an ice-age type of climate at the current time. The data also demonstrate that a glaciologically significant long-term change in snow precipitation can occur rapidly, in as short an interval as 1 year, much more rapidly than changes in temperature.

Population dynamics and stock assessment of Koth (Otolithoides biauritus Cantor, 1850) along the north-west coast of India

MSY, growth, selection and mortality parameters of Otolithoides biauritus have been worked out from data collected by MFV Saraswati of CIFE, and length frequency data from Ferry Wharf, Sasson dock, and Versova fish landing centres of Bombay. Values of L infinity, K, and t omicron obtained from length frequency study are 1572 mm, 0.2633/yr and 0.0289 yr respectively, and of weight growth parameters are W infinity = 10067 g, K = 0.03904/yr and t omicron = 0.0137 yr. Selection parameters are L + 150 mm, t sub(r) + 0.4167 yr lc + 240 mm and t omicron = 0.6367 yr. Selection factor (K) for codent worked out to be 12. Based on Z = 0.6486, the MSY of O. biauritus off northwest coast of India is assessed as 1,802 tons which is slightly higher than the current catch level of 1,634 tons.