Optimized CUDA-Based PDE Solver for Reaction Diffusion Systems on Arbitrary Surfaces

Partial differential equation (PDE) solvers are commonly employed to study and characterize the parameter space for reaction-diffusion (RD) systems while investigating biological pattern formation. Increasingly, biologists wish to perform such studies with arbitrary surfaces representing ‘real’ 3D geometries for better insights. In this paper, we present a highly optimized CUDA-based solver for RD equations on triangulated meshes in 3D. We demonstrate our solver using a chemotactic model that can be used to study snakeskin pigmentation, for example. We employ a finite element based approach to perform explicit Euler time integrations. We compare our approach to a naive GPU implementation and provide an in-depth performance analysis, demonstrating the significant speedup afforded by our optimizations. The optimization strategies that we exploit could be generalized to other mesh based processing applications with PDE simulations.

Granular computing as a basis of human–data interaction: a cognitive cities use case

The article proposes granular computing as a theoretical, formal and methodological basis for the newly emerging research field of human–data interaction (HDI). We argue that the ability to represent and reason with information granules is a prerequisite for data legibility. As such, it allows for extending the research agenda of HDI to encompass the topic of collective intelligence amplification, which is seen as an opportunity of today’s increasingly pervasive computing environments. As an example of collective intelligence amplification in HDI, we introduce a collaborative urban planning use case in a cognitive city environment and show how an iterative process of user input and human-oriented automated data processing can support collective decision making. As a basis for automated human-oriented data processing, we use the spatial granular calculus of granular geometry.

Edge caching with mobility prediction in virtualized LTE mobile networks

Abstract Mobile Edge Computing enables the deployment of services, applications, content storage and processing in close proximity to mobile end users. This highly distributed computing environment can be used to provide ultra-low latency, precise positional awareness and agile applications, which could significantly improve user experience. In order to achieve this, it is necessary to consider next-generation paradigms such as Information-Centric Networking and Cloud Computing, integrated with the upcoming 5th Generation networking access. A cohesive end-to-end architecture is proposed, fully exploiting Information-Centric Networking together with the Mobile Follow-Me Cloud approach, for enhancing the migration of content-caches located at the edge of cloudified mobile networks. The chosen content-relocation algorithm attains content-availability improvements of up to 500 when a mobile user performs a request and compared against other existing solutions. The performed evaluation considers a realistic core-network, with functional and non-functional measurements, including the deployment of the entire system, computation and allocation/migration of resources. The achieved results reveal that the proposed architecture is beneficial not only from the users’ perspective but also from the providers point-of-view, which may be able to optimize their resources and reach significant bandwidth savings.

ARTRIX final report,

"COO-1469-0067."

Numerical software, science or alchemy? /

Bibliography: p. 23-34.

A semi-virtual memory multi-programming system for the mini-computer PDP 8/3 (ILLIAC-3) /

Thesis (M.S.)--University of Illinois at Urbana-Champaign.

Simulation analysis of a network computer,

Bibliography: p. 43.

Techniques for improving the inherent parallelism in programs /

Thesis (M.S.) - University of Illinois at Urbana-Champaign.

An algorithm for solving linear recurrence systems on parallel and pipelined machines /

"UILU-ENG 78 1745."

Analysis of computer architectures for information retrieval /

Thesis (M. S.)--University of Illinois at Urbana-Champaign.

Further negative results regarding the use of continued fractions for digital computer arithmetic /

Mode of access: Internet.

Adaptive merging by parallel disjoint comparisons /

Includes bibliographical references.

A parallel QR-algorithm for tridiagonal symmetric matrices /

"NSF-OCA-GJ-36936-000008."

Parallel techniques.

Originally presented as the author's thesis, University of Illinois at Urbana-Champaign.

The statistical estimation of throughput and turnaround functions for a university computer system /

Vita.