717 resultados para E3 ubiquitine ligase


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Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

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The compositions of natural glasses and phenocrysts in basalts from Deep Sea Drilling Project Sites 501, 504, and 505, near the Costa Rica Rift, constitute evidence for the existence of a periodically replenished axial magma chamber that repeatedly erupted lavas of remarkably uniform composition. Magma compositions were affected by three general components: (1) injected magmas carrying (in decreasing order of abundance) Plagioclase, olivine, and chrome-spinel phenocrysts (spinel assemblage); (2) injected magmas carrying Plagioclase, clinopyroxene, and olivine phenocrysts, but no spinel (clinopyroxene assemblage); and (3) moderately evolved hybrids in the magma chamber itself. The compositions of the injected phenocrysts and minerals in glomerocrysts are as follows: Plagioclase - An85-94; olivine - Fo87-89; clinopyroxene - high Cr2O3 (0.7-1.1%), endiopside (Wo42En51Fs7), and aluminous chromian spinel (Cr/Cr + Al = 0.3). These minerals resemble those thought to occur in upper mantle sources (9 kbars and less) of ocean-ridge basalts and to crystallize in magmas near those sources. In the magma chamber, more sodic Plagioclase (An79-85), less magnesian olivine (Fo81-86) and low-Cr2O3 (0.1-0.4%) clinopyroxene formed rims on these crystals, grew as other phenocrysts, and formed cumulus segregations on the walls and floors of the magma chamber. In the spinel-assemblage magmas, magnesiochromite (Cr/Cr + Al = 0.4-0.5) also formed. Some cumulus segregations were later entrained in lavas as xenoliths. The glass compositions define 16 internally homogeneous eruptive units, 13 of which are in stratigraphic order in a single hole, Hole 504B, which was drilled 561.5 meters into the ocean crust. These units are defined as differing from each other by more than analytical uncertainty in one or more oxides. However, many of the glass groups in Hole 504B show virtually no differences in TiO2 contents, Mg/Mg + Fe2+, or normative An/An + Ab, all of which are sensitive indicators of crystallization differentiation. The differences are so small that they are only apparent in the glass compositions; they are almost completely obscured in whole-rock samples by the presence of phenocrysts and the effects of alteration. Moreover, several of the glass units at different depths in Hole 504B are compositionally identical, with all oxides falling within the range of analytical uncertainty, with only small variations in the rest of the suite. The repetition of identical chemical types requires (1) very regular injection of magmas into the magma chamber, (2) extreme similarity of injected magmas, and (3) displacement of very nearly the same proportion of the magmas in the chamber at each injection. Numerical modeling and thermal considerations have led some workers to propose the existence of such conditions at certain types of spreading centers, but the lava and glass compositions at Hole 504B represent the first direct evidence revealed by drilling of the existence of a compositionally nearly steady-state magma chamber, and this chapter examines the processes acting in it in some detail. The glass groups that are most similar are from clinopyroxene-assemblage lavas, which have a range of Mg/Mg + Fe2"1" of 0.59 to 0.65. Spinel-assemblage basalts are less evolved, with Mg/Mg + Fe2+ of 0.65 to 0.69, but both types have nearly identical normative An/An + Ab (0.65-0.66). However, the two lava types contain megacrysts (olivine, Plagioclase, clinopyroxene) that crystallized from melts with Mg/Mg + Fe2+ values of 0.70 to 0.72. Projection of glass compositions into ternary normative systems suggests that spinel-assemblage magmas originated deeper in the mantle than clinopyroxene-assemblage magmas, and mineral data indicate that the two types followed different fractionation paths before reaching the magma chamber. The two magma types therefore represent neither a low- nor a high-pressure fractionation sequence. Some of the spinel-assemblage magmas may have had picritic parents, but were coprecipitating all of the spinel-assemblage phenocrysts before reaching the magma chamber. Clinopyroxene-assemblage magmas did not have picritic parents, but the compositions of phenocrysts suggest that they originated at about 9 kbars, near the transition between plagioclase peridotite and spinel peridotite in the mantle. Two glass groups have higher contents of alkalis, TiO2, and P2O5 than the others, evidently as a result of the compositions of mantle sources. Eruption of these lavas implies that conduits and chambers containing magmas from dissimilar sources were not completely interconnected on the Costa Rica Rift. The data are used to draw comparisons with the East Pacific Rise and to consider the mechanisms that may have prevented the eruption of ferrobasalts at these sites.

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In the Tromper Wiek northeast of Rügen, acoustical investigations using Air Gun, Boomer, Chirp Sonar and Sediment-Echosounder were carried out. Together with sediment core information, it allowed the identification of five seismostratigraphic units (E1 to E5). Conventional and AMS-14C-datings supported their chronostratigraphical classification. The uppermost till (E1) was incised by late glacial channels filled with glaciolacustrine sediments (E2) of the early Baltic Ice Lake stages. These were regionally overlain with a sharp unconformity by a thick (locally >20 m) sedimentary complex (E3) of acoustically laminated silts of freshwater origin. This lower part of the E3-complex (E3a) is overlain by fluvial to coastal silty fine sands (E3b) deeper towards the Arkona Basin. Fine plant debris in the uppermost part of sub-unit E3a yielded ages of 10,100 and 10,500 14C-years B.P., representing the final phase of the Baltic Ice Lake. The fine sands of sub-unit E3b were deposited after the final drainage of the Baltic Ice Lake. In the shallower central part of the bay, the silts of sub-unit E3a were covered by a younger unit (E4) of fine sand with plant debris. A sedge peat occurring at the basis of unit E4 yielded an age of 9,590 14C-years B.P. The fine sands overlying the unit E3 in the central part of Tromper Wiek were deposited in the Ancylus Lake. Their position at about 20 m below present sea level (b.s.l.) reflects the maximum highstand in this area. The character and distribution of the Early Holocene deposits at greater depth suggest a lake water level at about 30 m b.s.l. after this highstand. Below 25 m b.s.l. muddy Littorina Sea sediments are observed. The thickness of these muds and sandy muds increases gradually towards the Arkona Basin. Locally, they are found in a channel-like structure immediately north of Jasmund.

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An in situ iron enrichment experiment was carried out in the Southern Ocean Polar Frontal Zone and fertilized a patch of water within an eddy of the Antarctic Circumpolar Current (EisenEx, Nov. 2000). During the experiment, a physical speciation technique was used for iron analysis in order to understand the changes in iron distribution and size-fractionations, including soluble Fe (<200 kDa), colloidal Fe (200 kDa-0.2 µm) and labile particle Fe (>0.2 µm), throughout the development of the phytoplankton bloom. Prior to the first infusion of iron, dissolved (<0.2 µm) iron concentrations in the ambient surface seawater were extremely low (0.06±0.015 nM) with colloidal iron being a minor fraction. For the iron addition, an acidified FeSO4 solution was released three times over a 23-day period to the eddy. High levels of dissolved iron concentrations (2.0±1.1 nM) were measured in the surface water until 4 days after the first iron infusion. After every iron infusion, when high iron concentrations were observed before storm events, there was a significant correlation between colloidal and dissolved iron concentrations ([Colloidal Fe]=0.7627[Dissolved Fe]+0.0519, R2=0.9346). These results indicate that a roughly constant proportion of colloidal vs. dissolved iron was observed after iron infusion (~76%). Storm events caused a significant decrease in iron concentrations (<0.61 nM in dissolved iron) and changed the proportions of the three iron size-fractions (soluble, colloidal and labile particle). The changes in each iron size-fraction indicate that colloidal iron was eliminated from surface mixed layer more easily than particulate and soluble fractions. Therefore, particle and soluble iron efficiently remain in the mixed layer, probably due to the presence of suspended particles and naturally dissolved organic ligands. Our data suggest that iron removal through colloidal aggregation during phytoplankton bloom should be considered in the oceanic iron cycle.

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RNA ligases function pervasively across the three kingdoms of life for RNA repair, splicing and can be stress induced. The RtcB protein (also HSPC117, C22orf28, FAAP and D10Wsu52e) is one such conserved ligase, involved in tRNA and mRNA splicing. However, its physiological role is poorly described, especially in bacteria. We now show in Escherichia coli bacteria that the RtcR activated rtcAB genes function for ribosome homeostasis involving rRNA stability. Expression of rtcAB is activated by agents and genetic lesions which impair the translation apparatus or may cause oxidative damage in the cell. Rtc helps the cell to survive challenges to the translation apparatus, including ribosome targeting antibiotics. Further, loss of Rtc causes profound changes in chemotaxis and motility. Together, our data suggest that the Rtc system is part of a previously unrecognised adaptive response linking ribosome homeostasis with basic cell physiology and behaviour.

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HIV-1 integrase, the viral enzyme responsible for provirus integration into the host genome, can be actively degraded by the ubiquitin-proteasome pathway. Here, we identify von Hippel-Lindau binding protein 1(VBP1), a subunit of the prefoldin chaperone, as an integrase cellular binding protein that bridges interaction between integrase and the cullin2 (Cul2)-based von Hippel-Lindau (VHL) ubiquitin ligase. We demonstrate that VBP1 and Cul2/VHL are required for proper HIV-1 expression at a step between integrase-dependent proviral integration into the host genome and transcription of viral genes. Using both an siRNA approach and Cul2/VHL mutant cells, we show that VBP1 and the Cul2/VHL ligase cooperate in the efficient polyubiquitylation of integrase and its subsequent proteasome-mediated degradation. Results presented here support a role for integrase degradation by the prefoldin-VHL-proteasome pathway in the integration-transcription transition of the viral replication cycle.

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Although epidemiological studies suggest that type 2 diabetes mellitus (T2DM) increases the risk of late-onset Alzheimer's disease (LOAD), the biological basis of this relationship is not well understood. The aim of this study was to examine the genetic comorbidity between the 2 disorders and to investigate whether genetic liability to T2DM, estimated by a genotype risk scores based on T2DM associated loci, is associated with increased risk of LOAD. This study was performed in 2 stages. In stage 1, we combined genotypes for the top 15 T2DM-associated polymorphisms drawn from approximately 3000 individuals (1349 cases and 1351 control subjects) with extracted and/or imputed data from 6 genome-wide studies (>10,000 individuals; 4507 cases, 2183 controls, 4989 population controls) to form a genotype risk score and examined if this was associated with increased LOAD risk in a combined meta-analysis. In stage 2, we investigated the association of LOAD with an expanded T2DM score made of 45 well-established variants drawn from the 6 genome-wide studies. Results were combined in a meta-analysis. Both stage 1 and stage 2 T2DM risk scores were not associated with LOAD risk (odds ratio = 0.988; 95% confidence interval, 0.972-1.004; p = 0.144 and odds ratio = 0.993; 95% confidence interval, 0.983-1.003; p = 0.149 per allele, respectively). Contrary to expectation, genotype risk scores based on established T2DM candidates were not associated with increased risk of LOAD. The observed epidemiological associations between T2DM and LOAD could therefore be a consequence of secondary disease processes, pleiotropic mechanisms, and/or common environmental risk factors. Future work should focus on well-characterized longitudinal cohorts with extensive phenotypic and genetic data relevant to both LOAD and T2DM.

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Global competition requires that the companies adapt themselves to technological changes rapidly, develop new products, reduce the cost, shorten the time to market, and increase the quality. In this context, supplier involvement in New Product Development (NPD) is determinant for a company to respond to the requirements of the increasingly dynamic markets. The main purpose of the paper is to demonstrate the importance of supplier involvement in NPD, buyer-supplier relationships and their effects on buyer’s NPD process, highlighting the benefits of supplier involvement, the barriers, the strategic aspects and industry aspects. These issues are addressed with a case study from the semiconductor industry. Besides helping to understand NPD in the semiconductor industry, the contribution and fi ndings of this work are clear: the results achieved confirm the findings of studies referred in the literature review, and confirm that the semiconductor industry sector requires a closer and more complex relationship structure with suppliers, given the specificities and challenges of the sector, such as rapid technological changes, permanent innovation, global competition, reduction of cost and time-to-market cycle, increased capacity, among other. The main contribution of the paper to the scientific literature and to managers is the better understanding of the buyer-supplier relationships in NPD in the semiconductor industry.

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This study aimed to analyze the leadership style adopted by managers of nongovernmental organizations in the metropolitan region of Belem on the theory of Hersey and Blanchard. This theory is called situational leadership ranks E1, E2, E3, E4 and the styles of leadership and maturity in parallel classes M1, M2, M3 and M4. This study examined the relationship of leadership styles with the maturity of work, identified the relationship of leadership styles as related to psychological maturity and job maturity and psychological maturity. The main objectives were to analyze and relate leadership styles with the maturity of the leaders and understand the phenomenon of leadership from the self-perception of those who lead the organizations studied. To achieve the objectives we used a questionnaire already validated the theory of situational leadership and applied in 320 non-governmental organizations in the metropolitan region of Belem The methodology was quantitative, descriptive and exploratory. The analysis was by descriptive statistics and inferential statistics for univariate and bivariate form, applying the chi-square, the V Crammer and Spearman correlation. The data analysis shows safety, attested to the frequencies, and average margin of error and after application of the tests it was found that a relationship between the leadership style of work with the maturity and psychological maturity. The managers of nongovernmental organizations practicing various styles of leadership and focus on the quadrant of high maturity. It was diagnosed when the manager uses only one style of leadership was the predominance of E3 "share or support", which represents 24% of the sample. As uses two styles of leadership is the predominance of E3 and E2, which represents 76%. So the managers of nongovernmental organizations in the metropolitan region of Belem, practicing a style of leadership support, sharing ideas for decision making using a democratic style

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Glutamine synthetase (GS) is a vital enzyme for the assimilation of ammonia into amino acids in higher plants. In legumes, GS plays a crucial role in the assimilation of the ammonium released by nitrogen-fixing bacteria in root nodules, constituting an important metabolic knob controlling the nitrogen (N) assimilatory pathways. To identify new regulators of nodule metabolism, we profiled the transcriptome of Medicago truncatula nodules impaired in N assimilation by specifically inhibiting GS activity using phosphinothricin (PPT). Global transcript expression of nodules collected before and after PPT addition (4, 8, and 24 h) was assessed using Affymetrix M. truncatula GeneChip arrays. Hundreds of genes were regulated at the three time points, illustrating the dramatic alterations in cell metabolism that are imposed on the nodules upon GS inhibition. The data indicate that GS inhibition triggers a fast plant defense response, induces premature nodule senescence, and promotes loss of root nodule identity. Consecutive metabolic changes were identified at the three time points analyzed. The results point to a fast repression of asparagine synthesis and of the glycolytic pathway and to the synthesis of glutamate via reactions alternative to the GS/GOGAT cycle. Several genes potentially involved in the molecular surveillance for internal organic N availability are identified and a number of transporters potentially important for nodule functioning are pinpointed. The data provided by this study contributes to the mapping of regulatory and metabolic networks involved in root nodule functioning and highlight candidate modulators for functional analysis.

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Les protéines MCM (minichromosome maintenance) forment un complexe hétérohexamérique composé des protéines MCM2 à MCM7 qui possède une activité hélicase nécessaire lors de la réplication de l’ADN. Ce complexe est la cible des protéines ATM et ATR, kinases responsables de l’initiation de la réponse cellulaires aux dommages à l’ADN, pour permettre l’arrêt de la réplication lors de la détection de cassure double brin. De plus, les MCM permettent le remodelage de la chromatine par leur activité hélicase mais aussi par leur association avec une chaperone d’histone la protéine ASF1. Toutefois, la majorité des complexes MCM ne co-localisent pas avec les origines de réplication. De plus, la quantité des protéines MCM dans la cellule est nettement supérieure à la quantité requise lors de la réplication. Ces deux faits laissent présager que ce complexe hélicase pourrait jouer un second rôle. Des études effectuées au laboratoire ont démontré une augmentation de la fixation à la chromatine des protéines MCM suite au traitement avec l’étoposide, un inhibiteur de la topoisomérase II qui cause des cassures double brin. L’étude des interactions de la protéine MCM2 par spectrométrie de masse ainsi que par immunobuvardage ont démontré une augmentation de l’interaction entre la protéine MCM2 et ASF1 suite aux dommages. Ceci suggère que les protéines MCM pourraient être impliquées dans les mécanismes de réparation de l’ADN. La nature de l’interaction entre la protéine MCM2 et ASF1 a été déterminée in vitro par des immunobuvardages de type Far western et des Dot blot avec des mutants de la protéine MCM2. Des cellules U2OS-Flp-in ont été utilisées pour générer des lignées stables exprimants les protéines MCM2 à MCM7 avec une étiquette GFP ou fusionnées avec une biotine-ligase (BirA). Les cellules ont été cultivées dans du milieu SILAC et des immunoprécipitations ont été effectuées sur des cellules contrôles (R0K0), des cellules qui expriment MCM-GFP ou BirA (R6K4) non-traitées et des cellules qui expriment MCM-GFP ou BirA traitées à l’étoposide (R10K8). Les immunoprécipitations ont été analysés au spectromètre de masse pour déterminer la modulation des interactions avant et après dommages à l’ADN. Les études d’interactions in vitro ont permis d’identifier que l’interaction entre la protéine MCM2 et ASF1 se situe entre les acides aminés 81-162 sur la protéine MCM2. L’approche de spectrométrie de masse a permis d’identifier plusieurs protéines liant le complexe MCM qui sont impliquées non seulement dans la réplication de l’ADN mais aussi dans le remodelage de la chromatine. De plus, certains de ces nouveaux partenaires augmentent leur interaction avec le complexe suite à l’induction de dommages. Ces résultats suggèrent que les protéines MCM jouent un rôle dans la réorganisation de la chromatine dans les mécanismes de réparation de l’ADN.

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O desenvolvimento da nanotecnologia vem se intensificando nos últimos anos. Sendo que os NM já estão sendo utilizados em vários produtos disponíveis no mercado. Dentre os NM mais utilizados estão os compostos de carbono que embora sejam compostos somente por este elemento podem ter estruturas diferentes que refletem em suas aplicações e possivelmente em seus efeitos. Dentre os NM de carbono, o grafeno e o óxido de grafeno apresentam promissoras características que ampliam sua utilização em diversos segmentos desde eletrônicos até a distribuição de medicamentos. A intensificação da produção e utilização destes NM é acompanhada pela liberação destes nanomateriais no ambiente que pode afetar os organismos vivos, principalmente os animais aquáticos. Entretanto, pouco se sabe sobre os efeitos do óxido de grafeno em crustáceos de importância comercial como é o caso do camarão branco Litopenaeus vannamei. Portanto, a presente dissertação teve como objetivo avaliar os efeitos biológicos da exposição ao óxido de grafeno em diferentes tecidos do camarão.

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Three types of phospholipases, phospholipase D, secreted phospholipase A2, and patatin-related phospholipase A (pPLA) have functions in auxin signal transduction. Potential linkage to auxin receptors ABP1 or TIR1, their rapid activation or post-translational activation mechanisms, and downstream functions regulated by these phospholipases is reviewed and discussed. Only for pPLA all aspects are known at least to some detail. Evidence is gathered that all these signal reactions are located in the cytosol and seem to merge on regulation of PIN-catalyzed auxin efflux transport proteins. As a consequence, auxin concentration in the nucleus is also affected and this regulates the E3 activity of this auxin receptor. We showed that ABP1, PIN2, and pPLA, all outside the nucleus, have an impact on regulation of auxin-induced genes within 30 min. We propose that regulation of PIN protein activities and of auxin efflux transport are the means to coordinate ABP1 and TIR1 activity and that no physical contact between components of the ABP1-triggered cytosolic pathways and TIR1-triggered nuclear pathways of signaling is necessary to perform this.

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Background and aims: Inflammation has long been regarded as a major contributor to cellular oxidative damage and to be involved in the promotion of carcinogenesis. Methods: We aimed to investigate the oxidative damage in inflammatory bowel disease [IBD] patients through a case–control and prospective study involving 344 IBD patients and 294 healthy controls. DNA damage and oxidative DNA damage were measured by comet assay techniques, and oxidative stress by plasmatic lipid peroxidation, protein carbonyls, and total antioxidant capacity. Results: Higher DNA damage [p < 0.001] was found both in Crohn’s disease [CD] (9.7 arbitrary units [AU]; interquartile range [IQR]: 6.2–14.0) and ulcerative colitis [UC] [7.1 AU; IQR: 4.4–11.7], when compared with controls [5.4 AU; IQR: 3.8–6.8], and this was also the case with oxidative DNA damage [p < 0.001] [CD: 3.6 AU; IQR: 1.8–6.8; UC: 4.6 AU; IQR: 2.4–8.1], when compared with controls: 2.3 AU; IQR: 1.2–4.2]. Stratifying patients into groups according to therapy (5-aminosalicylic acid [5-ASA], azathioprine, anti-TNF, and combined therapy [azathioprine and anti-TNF]) revealed significant between-group differences in the level of DNA damage, both in CD and UC, with the combined therapy exhibiting the highest DNA damage levels [11.6 AU; IQR: 9.5–14.3, and 12.4 AU; IQR: 10.6–15.0, respectively]. Among CD patients, disease behaviour [B1 and B2], and age at diagnosis over 40 years [A3] stand as risk factors for DNA damage. For UC patients, the risk factors found for DNA damage were disease activity, treatment, age at diagnosis under 40 years [A1 + A2] and disease locations [E2 and E3]. Conclusions: In IBD there is an increase in DNA damage, and treatment, age at diagnosis and inflammatory burden seem to be risk factors.

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Bunodosoma cangicum é uma anêmona-do-mar que habita a faixa intermarés nas regiões sul e sudeste do Brasil. Assim como outros animais característicos destes locais, esta espécie de anêmona enfrenta diariamente as mudanças nos parâmetros ambientais decorrentes do ciclo de marés, os quais podem variar conforme a estação do ano. Estas mudanças podem alterar o metabolismo oxidativo dos animais destes habtats, que pode também ser influenciado pelas diferentes estações ao longo do ano. Portanto, a influência de dois períodos distintos durante o ano além da exposição ao ar sobre parâmetros oxidativos (Capacidade antioxidante total contra radicais peroxil - ACAP, atividade da glutamato cisteína ligase - GCL, conteúdo de glutationa reduzida - GSH e nível de perxidação lipídica - LPO) foi avaliada em anêmonas-do-mar coletadas em situação de submersão ou de emersão em um perío do frio e um quente (final de inverno/começo de primavera e início de outono). A resposta destes parâmetros, bem como do conteúdo de espécies reativas de oxigênio (ERO) e de adenosina trifosfato (ATP), também foi avaliada em animais submetidos diariamente à exposição ao ar (3 h) em laboratório por 30 dias. Com relação aos parâmetros oxidativos considerando apenas os diferentes períodos do ano, uma maior atividade da GCL foi observada durante o período mais frio, assim como um maior nível de LPO neste mesmo período. Com relação à exposição ao ar, no que diz respeito às defesas antioxidantes, em animais coletados em emersão foi observado uma maior atividade da GCL durante o período quente, além de uma maior ACAP e um menor conteúdo de GSH em anêmonas-do-mar coletadas, tanto no período frio como quente. Com relação aos danos oxidativos, um maior nível de LPO foi encontrado em anêmonas-do-mar coletadas durante emersão no período mais (outono). De forma geral, não foi observado um padrão de variação dos parâmetros oxidativos em função da hora do dia, evidenciando-se apenas uma diminuição na ACAP e um aumento da GSH, em torno das 13h, em animais coletados durante a estação mais quente. As 7 anêmonas-do-mar expostas ao ar sob condições controladas de laboratório mostraram variações transitórias da ACAP (aumento) e do conteúdo de GSH (redução) após a reoxigenação. Estes resultados indicam que alguns parâmetros oxidativos de B. cangicum apresentam variação sazonal enquanto outros são afetados pela exposição ao ar. No entanto, o padrão de resposta destes parâmetros é diferente em campo e em laboratório, sugerindo que os parâmetros controlados em laboratório, tais como temperatura, fotoperíodo e iluminação, modificam a resposta do metabolismo oxidativo de B. cangicum à exposição ao ar em campo.