Multiple four-stranded conformations of human telomere sequence d(CCCTAA) in solution

By detailed NMR analysis of a human telomere repeating unit, d(CCCTAA), we have found that three distinct tetramers, each of which consists of four symmetric single-strands, slowly exchange in a slightly acidic solution. Our new finding is a novel i-motif topology (T-form) where T4 is intercalated between C1 and C2 of the other duplex. The other two tetramers have a topology where C1 is intercalated between C2 and C3 of the other parallel duplex, resulting in the non-stacking T4 residues (R-form), and a topology where C1 is stacked between C3 and T4 of the other duplex (S-form). From the NMR denaturation profile, the R-form is the most stable of the three structures in the temperature range of 15–50°C, the S-form the second and the T-form the least stable. The thermodynamic parameters indicate that the T-form is the most enthalpically driven and entropically opposed, and its population is increased with decreasing temperature. The T-form structure determined by restrained molecular dynamics calculation suggests that inter-strand van der Waals contacts in the narrow grooves should contribute to the enthalpic stabilization of the T-form.

Deuterium isotope effect on the intramolecular electron transfer in Pseudomonas aeruginosa azurin

Intramolecular electron transfer in azurin in water and deuterium oxide has been studied over a broad temperature range. The kinetic deuterium isotope effect, kH/kD, is smaller than unity (0.7 at 298 K), primarily caused by the different activation entropies in water (−56.5 J K−1 mol−1) and in deuterium oxide (−35.7 J K−1 mol−1). This difference suggests a role for distinct protein solvation in the two media, which is supported by the results of voltammetric measurements: the reduction potential (E0′) of Cu2+/+ at 298 K is 10 mV more positive in D2O than in H2O. The temperature dependence of E0′ is also different, yielding entropy changes of −57 J K−1 mol−1 in water and −84 J K−1 mol−1 in deuterium oxide. The driving force difference of 10 mV is in keeping with the kinetic isotope effect, but the contribution to ΔS‡ from the temperature dependence of E0′ is positive rather than negative. Isotope effects are, however, also inherent in the nuclear reorganization Gibbs free energy and in the tunneling factor for the electron transfer process. A slightly larger thermal protein expansion in H2O than in D2O (0.001 nm K−1) is sufficient both to account for the activation entropy difference and to compensate for the different temperature dependencies of E0′. Thus, differences in driving force and thermal expansion appear as the most straightforward rationale for the observed isotope effect.

Spin glass phase in the four-state three-dimensional Potts model

We perform numerical simulations, including parallel tempering, a four-state Potts glass model with binary random quenched couplings using the JANUS application-oriented computer. We find and characterize a glassy transition, estimating the critical temperature and the value of the critical exponents. Nevertheless, the extrapolation to infinite volume is hampered by strong scaling corrections. We show that there is no ferromagnetic transition in a large temperature range around the glassy critical temperature. We also compare our results with those obtained recently on the “random permutation” Potts glass.

Investigação da estabilidade de fases da zircônia-escândia

Nesse trabalho foi proposto investigar a estabilidade de fases do sistema zircônia-escândia (ScSZ) por meio do estudo termodinâmico de nanopartículas, na faixa de 0 a 20% em mol de Sc2O3, e a partir da introdução de um segundo aditivo (Dy2O3 e Nb2O5) ao ZrO2 contendo 10% em mol de Sc2O3 (10ScSZ). A estabilidade de fases do ScSZ foi avaliada com base em dados termodinâmicos determinados pelas técnicas de microcalorimetria de adsorção de água e calorimetria de dissolução à alta temperatura. As soluções sólidas foram sintetizadas pelo método de coprecipitação de hidróxidos. Dados termodinâmicos foram determinados para as formas polimórficas encontradas (monoclínica, tetragonal, cúbica, romboédrica β e γ) por difração de raios X no ScSZ. Esse trabalho resultou no diagrama de fases em nanoescala de tamanho de partícula-composição. Os efeitos produzidos pela introdução de aditivos na matriz de 10ScSZ foram investigados visando obter a possível estabilização da estrutura cúbica (c) e a supressão da transformação de fase c-β, característica do sistema binário. As composições foram sintetizadas por coprecipitação de hidróxidos e por reações em estado sólido para fins comparativos. Os materiais foram sinterizados convencionalmente e por sinterização assistida por campo elétrico. A estabilização completa da fase cúbica ocorreu a partir de teores molares de 1% de Dy2O3 e 0,5% de Nb2O5. O menor teor de Nb2O5 necessário para a estabilização da fase foi atribuído à provável formação da fase líquida durante a sinterização e ao menor tamanho do íon Nb5+. Os resultados de difratometria de raios X em alta temperatura e análise térmica mostraram que houve supressão da transição c-β. As amostras contendo 0,5% mol de Nb2O5 apresentaram valores de condutividade iônica similares aos do 10ScSZ sem aditivos em uma ampla faixa de temperatura com elevada estabilidade em um período de 170 h a 600 °C.

Efeito da temperatura de revenimento sobre o grau de sensitização e resistência à corrosão por pite de aços inoxidáveis supermartensíticos contendo 13% Cr, 5% Ni, com e sem adições de Nb e Mo.

O desenvolvimento dos aços inoxidáveis Super-Martensíticos (SM) nasce da necessidade de implementar novas tecnologias, mais econômicas e amigáveis ao meio ambiente. Os aços inoxidáveis SM são uma derivação dos aços inoxidáveis martensíticos convencionais, diferenciando-se basicamente no menor teor de carbono, na adição de Ni e Mo. Foram desenvolvidos como uma alternativa para aços inoxidáveis duplex no uso de dutos para a extração de petróleo offshore em meados dos anos 90. Para que esses aços apresentem as propriedades mecânicas de resistência à tração e tenacidade é necessário que sejam realizados tratamentos de austenitização, seguido de têmpera, e de revenimento, onde, particularmente para este último, há várias opções de tempos e temperaturas. Como os tratamentos térmicos geram as propriedades mecânicas através de transformações de fase (precipitação) podem ocorrer alterações da resistência à corrosão. São conhecidos os efeitos benéficos da adição de Nb em aços inoxidáveis tradicionais. Por isso, o objetivo desta pesquisa foi estudar aços inoxidáveis SM contendo Nb. Foi pesquisada a influência da temperatura de revenimento sobre a resistência à corrosão de três aços inoxidáveis SM, os quais contêm 13% Cr, 5% Ni, 1% a 2% Mo, com e sem adições de Nb. No presente trabalho, foram denominados de SM2MoNb, SM2Mo e SM1MoNb, que representam aços com 2% Mo, 1% Mo e 0,11% Nb. Dado que os principais tipos de corrosão para aços inoxidáveis são a corrosão por pite (por cloreto) e a corrosão intergranular (sensitização), optou-se por determinar os Potenciais de Pite (Ep) e os Graus de Sensitização (GS) em função da temperatura de revenimento. Os aços passaram por recozimento a 1050°C por 48 horas, para eliminação de fase ferrita delta. Em seguida foram tratados a 1050 °C por 30 minutos, com resfriamento ao ar, para uniformização do tamanho de grão. A estrutura martensítica obtida recebeu tratamentos de revenimento em temperaturas de: 550 °C, 575 °C, 600 °C, 625 °C, 650 °C e 700 °C, por 2 horas. O GS foi medido através da técnica de reativação eletroquímica potenciodinâmica na versão ciclo duplo (DL-EPR), utilizando-se eletrólito de 1M H2SO4 + 0,01M KSCN. Para determinar o Ep foram realizados ensaios de polarização potenciodinâmica em 0,6M NaCl. Os resultados obtidos foram discutidos através das variações microestruturais encontradas. Foram empregadas técnicas de microscopia ótica (MO), microscopia eletrônica de varredura (MEV), simulação termodinâmica de fases através do programa Thermo-Calc e determinação de austenita revertida mediante difração de raios X (DRX) e ferritoscópio. A quantificação da austenita por DRX identificou que a partir de 600 °C há formação desta fase, apresentando máximo em 650 °C, e novamente diminuindo para zero a 700 °C. Por sua vez, o método do ferritoscópio detectou austenita nas condições em que a analise de DRX indicou valor nulo, sendo as mais críticas a do material temperado (sem revenimento) e do aço revenido a 700 °C. Propõe-se que tais diferenças entre os dois métodos se deve à morfologia fina da austenia retida, a qual deve estar localizada entre as agulhas de martensita. Os resultados foram discutidos em termos da precipitação de Cr23C6, Mo6C, NbC, fase Chi, austenita e ferrita, bem como das consequências do empobrecimento em Cr e Mo, gerados por tais microconstituintes. São propostos três mecanismos para explicar a sensitização: o primeiro é devido a precipitação de Cr23C6, o segundo a precipitação de fase Chi (rica em Cr e Mo) e o terceiro é devido a formação de ferrita durante o revenimento. O melhor desempenho quanto ao GS foi obtido para os revenimentos a 575 °C e 600°C, por 2 horas. Os resultados de Ep indicaram que o aço SM2MoNb, revenido a 575°C, tem o melhor desempenho quanto à resistência à corrosão por cloreto. Isso associado ao baixo GS coloca este aço, com este tratamento térmico, numa posição de destaque para aplicações onde a resistência à corrosão é um critério de seleção de material, uma vez que, segundo a literatura a temperatura de 575 °C está no intervalo de temperaturas de revenimento onde são obtidas as melhores propriedades mecânicas.

Study of the thermal decomposition of petrochemical sludge in a pilot plant reactor

The pyrolysis of a sludge produced in the waste water treatment plant of an oil refinery was studied in a pilot plant reactor provided with a system for condensation of semivolatile matter. The study comprises experiments at 350, 400, 470 and 530 °C in nitrogen atmosphere. Analysis of all the products obtained (gases, liquids and chars) are presented, with a thermogravimetric study of the char produced and analysis of main components of the liquid. In the temperature range studied, the composition of the gas fraction does not appreciably vary. In the liquids, the light hidrocarbon yield increases with increasing temperature, whereas the aromatic compounds diminish. The decomposition of the solid fraction has been analysed, finding a material that reacts rapidly with oxygen regardless of the conditions it is formed.

Liquid–Liquid Equilibria of Water + Ethanol + 1-Butyl-3-methylimidazolium Bis(trifluoromethanesulfonyl)imide Ternary System: Measurements and Correlation at Different Temperatures

In this work authors present the experimental liquid–liquid equilibria (LLE) data of water + ethanol + 1-butyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ([bmim][Tf2N]) system at different temperatures. The LLE of the system was obtained in the temperature range from 283.2 to 323.2 K. The nonrandom two liquid (NRTL) and universal quasichemical (UNIQUAC) models were used to correlate ternary systems. The equilibrium compositions were successfully correlated by the interaction parameters from both models, however UNIQUAC gave a more accurate correlation. Finally, a study about the solvent capability of ionic liquid was made in order to evaluate the possibility of separating the mixture formed by ethanol and water using that ionic liquid.

Lithium isotopic composition of pore fluids and sediments in the Costa Rica subduction zone

Pore fluid and sediment Li concentrations and isotopic ratios provide important insights on the hydrology, sediment contribution to the arc volcanoes and fluid-sediment reactions at the dominantly non-accretionary Costa Rica subduction zone. Ocean Drilling Program Site 1039 in the trench axis provides a reference section of 400 m of the incoming sediments, and Site 1040, situated arcward from the trench, consists of a deformed sedimentary wedge and apron sediments, the décollement, and the partially dewatered underthrust sediment section. At the reference site, pore fluids show important isotopic variations (delta6Li=-21.7 to -37.8 per mil), reflecting the interplay of in situ alteration of volcanic material and ion exchange with clay minerals. In the basal section, a reversal of Li concentration and delta6Li toward seawater values is observed, providing supporting evidence for a lateral seawater flow system in the upper oceanic basement underlying this sediment section. At Site 1040, pore fluid of the lower deformed wedge sediments and within the décollement is enriched in Li and the isotopic compositions are relatively light, suggesting infiltration of a deep-seated fluid. The delta6Li value of -22 per mil of this Li-enriched fluid (261 µM), when compared with the delta6Li value of the subducted sediment section (-11 per mil), suggests that the deep source fluid originates from mineral fluid dehydration and transformation reactions at temperatures of 100 to 150°C, consistent with the temperature range of the up-dip seismogenic zone and of transformation of smectite to illite. The distribution of Li and its isotopes in the underthrust section are similar to those at the reference site, indicating near complete subduction of the incoming sediments and that early dewatering of the underthrust sediments occurs predominantly by lateral flow into the ocean. The hemipelagic clay-rich sediment section of the subducting plate carries most of the Li into this subduction zone, and the pelagic diatomaceous and nannofossil calcareous oozes contain little Li. The Li isotopes of both the clay-rich hemipelagic sediments and of the pelagic oozes are, however, similar, with delta6Li values of -9 to -12 per mil. The observations that (1) the delta6Li values of the underthrust sediments are distinctly lower than that of the mantle, and (2) the lavas of the Costa Rican volcanoes are enriched in Li and 7Li, provide an approximation of the contribution of the subducted sediments to the arc volcanoes. A first order mass balance calculation suggests that approximately half of the Li flux delivered by subducted sediments and altered oceanic crust into the Middle American Trench is recycled to the Costa Rican arc and at most a quarter of sedimentary Li is returned into the ocean through thrust faults, primarily the décollement thrust.

Distribution of planktonic foraminifera and paleotemperature reconstruction for the Subantarctic Zone of the South Atlantic

Pleistocene summer sea-surface temperatures (SSST) have been reconstructed on a composite core section recovered in the Subantarctic Zone of the Southern Ocean from planktonic foraminifers applying the Modern Analog Technique. The composite consists of Core PS2489-2 and the sections recovered at ODP Site 1090, and documents the last 1.83 Ma. Three distinct climatic periods can be identified that mirror the Pleistocene development of the Southern Ocean hydrography. Cold climatic conditions prevailed at 43°S during glacial as well as during interglacial periods during the early Pleistocene (1.83-0.87 Ma), indicating a northward shift of isotherms that characterize the present-day Polar Front Zone by about 7° of latitude. Evidence shows a strong linkage between Southern Ocean and low latitude climate during that interval time. Between the Mid-Pleistocene Revolution (ca. 0.9 Ma) and the Mid-Brunhes Event (ca. 0.4 Ma), we observe higher amplitude fluctuations in the SSST between glacial and interglacial periods, corresponding to the temperature range between the present Polar Front and Subantarctic Front. These climatic variations have been related to changes in the northern hemisphere ice sheets. The past 0.4 Ma are characterized by strong SSST variations, of up to 8°C, between glacials and interglacials. Only during the climatic optima (stages 11.3, 9.3, 7.5, 7.1, 5.5, and the early Holocene), SSST exceeded present SSST at the core locality (10.2°C). Although the carbonate dissolution record exhibits high variability during the Pleistocene, it can be shown that SSST estimates were not significantly biased. The Mid-Brunhes dissolution cycle as well as the Mid-Pleistocene enhanced carbonate preservation appear to belong to a global long-term variability in carbonate preservation.

Geochemistry and sedimentation rates of ODP Leg 199 sites and of surface sediments in the eastern Pacific ocean

We present the first high-resolution organic carbon mass accumulation rate (MAR) data set for the Eocene equatorial Pacific upwelling region, from Sites 1218 and 1219 of the Ocean Drilling Program. A maximum Corg MAR anomaly appears at 41 Ma and corresponds to a high carbonate accumulation event (CAE). Independent evidence suggests that this event (CAE-3) was a time of rapid cooling. Throughout the Eocene, organic carbon burial fluxes were an order of magnitude lower than fluxes recorded for the Holocene. In contrast, the expected organic carbon flux, calculated from the biogenic barium concentrations for these sites, is roughly equal to modern. A sedimentation anomaly appears at 41 Ma, when both the measured and the expected organic carbon MAR increases by a factor of two-three relative to the background Eocene fluxes. The rain of estimated Corg and barium from the euphotic zone to the sediments increased by factors of three and six, respectively. We suggest that the discrepancy between the expected and measured Corg in the sediments is a direct consequence of the increased metabolic rates of all organisms throughout the Eocene oceans and sediments. This hypothesis is supported by recent work in ecology and biochemical kinetics that recognizes the fundamental basis of ecology as following from the laws of thermodynamics. This dependence is now elucidated as the Universal Temperature Dependence (UTD) "law" of metabolism and can be applied to all organisms over their biologically relevant temperature range. The general pattern of organic carbon and barium deposition throughout the Eocene is consistent with the UTD theory. In particular, the anomaly at 41 Ma (CAE-3) is associated with rapid cooling, an event that triggered slower metabolic rates for all organisms, slower recycling of organic carbon in the water and sediment column, and, consequently, higher deposition of organic carbon in the sediments. This "metabolism-based" scenario is consistent with the sedimentation patterns we observe for both Sites 1218 and 1219.

Magnesium/Calcium ratios in benthic foraminifera from surface sediments

We used modern epibenthic foraminifer tests of Cibicidoides mundulus and Planulina wuellerstorfi from South Atlantic core top sediments in order to establish Mg/Ca-temperature relationships for the temperature range from 0 to 15°C. We obtained the following calibrations: Mg/Ca (mmol/mol) = 0.830*exp(0.145*BWT (°C)) for P. wuellerstorfi, and Mg/Ca (mmol/mol) = 0.627*exp(0.143*BWT (°C)) for C. mundulus. However, a number of tests, especially those bathed in North Atlantic Deep Water, revealed higher Mg/Ca ratios than predicted from the calibration. Our data suggest that d[CO3 2-] of bottom water exerts a significant control on dMg/Ca (temperature-corrected) of C. mundulus (dMg/Ca = 0.017*d[CO3 2-] -0.14), while dMg/Ca of P. wuellerstorfi is more likely to be governed by TCO2 (dMg/Ca = -0.007*TCO2 + 15). Since both d[CO3 2-] and TCO2 are closely linked to [CO3 2-], it is inferred that carbonate ion acts as secondary control, after temperature, on benthic shell Mg/Ca below -4°C. A drop in [CO3 2-] by 25 ?mol/kg at 4 km water depth, as suggested for the Last Glacial Maximum, would decrease Mg/Ca by up to 0.4 mmol/mol, which leads to an underestimation of bottom water temperature by -3.5°C. Therefore our results indicate that the Mg/Ca thermometer should be used cautiously for benthic foraminifers where changes in the carbonate chemistry are present in the paleoceanographic record.

Stable isotope record and composition of planktonic foraminifera from ODP Site 172-1056

The stable isotopic composition of two planktonic foraminifer species (Globigerinoides sacculifer and Neogloboquadrina dutertrei) and two benthic foraminifer species (Cibicidoides wuellerstorfi and Uvigerina peregrina) was measured at sub-orbital resolution through the marine isotope stages (MISs) 10, 11, and 12 (345-460 ka) at Site 1056 on the Blake-Bahama Outer Ridge. Planktonic foraminifers were counted for the interval 405-450 ka at 2-4-kyr resolution. Site 1056 (32°29'N, 76°20'W) is located on the continental slope (water depth: 2167 m) beneath the Gulf Stream. The average rate of sediment accumulation through the interval is 11.4 cm/kyr, but sediment accumulation is much more rapid during glacial intervals (15-17 cm/kyr). The decline in percent carbonate during glacial intervals, and its rise during interglacials, indicates that the increased sediment supply is of terrigenous origin. Low carbonate values and low benthic delta13C, which are both associated with a weak Western Boundary Undercurrent and low North Atlantic Deep Water production, persist for 6 kyr after the benthic delta18O record indicates that ice volume has begun to decrease. Recovery of carbonate and benthic delta13C values is abrupt and rapid. Millennial-scale variation (~3-4 kyr) is apparent in the glacial intervals of the planktonic delta18O records and is more pronounced in a Delta delta18O record, which represents the temperature range in the photic zone. Semi-precessional (10-12-kyr) cycles are apparent in the planktonic deltadelta13C record. The millennial-scale cycles are largely caused by an increase in G. sacculifer delta18O and represent surface warming. They are interpreted as representing periodic increases in westward intensification of the gyre. The semi-precessional cycles are driven by changes in the N. dutertrei delta13C and represent fluctuations in the Gulf Stream itself and therefore likely have a tropical origin. Planktonic foraminifer census counts did not show an expected response to one of the largest glacial/interglacial transitions of the late Pleistocene. The most obvious change was an increase in faunal diversity during MIS 12.2, the interval of maximum delta18O values. This suggests that cool slope water and warm subtropical gyre water penetrated a more sluggish Gulf Stream with greater frequency at this time. The millennial-scale maxima in the Delta delta18O record are accompanied by decreases in diversity, which is consistent with the interpretation of surface warming during these events.

Alloying of pure magnesium with Mg-33.3 wt-%Zr master alloy

To capitalise on the strengthening potential of zirconium as a potent grain refiner for magnesium alloys, the mechanisms of adding zirconium to magnesium and its subsequent grain refining action need to be understood. Using a Mg-33.3Zr master alloy (Zirmax supplied by Magnesium Elektron Ltd) as a zirconium alloying additive, the influence of different alloying conditions on the dissolution of zirconium in magnesium was investigated. It was found that owing to the highly alloyable microstructure of Zirmax, the dissolution of zirconium was generally complete within a few minutes in the temperature range 730 to 780degreesC. Prolonging and/or intensifying stirring were found to have no conspicuous influence on further enhancing the dissolution of zirconium. In all cases studied, the average grain size increased with increasing holding time at temperature while the total zirconium content decreased. The finest grain structure and highest total zirconium content corresponded to sampling immediately after stirring. Pick up of iron by molten magnesium from the mild steel crucibles used for melting and holding, was significantly delayed or avoided in the temperature range 730 to 780degreesC by coating the crucibles with boron nitride. It is therefore feasible to conduct zirconium alloying at 730degreesC without the need of a considerable excess of Zirmax addition using a properly coated or lined steel crucible.

Phase-equilibrium data and liquidus for the system "MnO"-CaO-Al2O3-SiO2 at Al2O3/SiO2 of 0.55 and 0.65

Phase-equilibrium data and liquidus isotherms for the system MnO-CaO-(Al2O3 + SiO2) at silicomanganese alloy saturation have been determined in the temperature range of 1373 to 1723 K. The results are presented in the form of the pseudoternary sections MnO-CaO-(Al2O3 + SiO2) with Al2O3/SiO2 weight ratios of 0.55 and 0.65. The primary-phase fields have been identified in this range of conditions.

Liquidus temperatures in calcium ferrite slags in equilibrium with molten copper

Experimental laboratory methods have been developed that enable phase-equilibria studies to be carried out on slags in the system Ca-Cu-Fe-O in equilibrium with metallic copper. These techniques involve equilibration at temperature, rapid quenching, and chemical analysis of the phases using electron-probe X-ray microanalysis (EPNIA). Equilibration experiments have been carried out in the temperature range of 1150 degreesC to 1250 degreesC (1423 to 1523 K) and in the composition range of 4 to 80 wt pct "Cu2O," 0 to 25 wt pct CaO, and 20 to 75 wt pct "Fe2O3" in equilibrium with metallic copper. Liquidus and solidus data are reported for the primary-phase fields of spinel (magnetite) and dicalcium ferrite. The resulting data have been used to construct liquidus isotherms of the CaO-"Cu2O"-"Fe2O3" system at metallic copper saturation.