The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer

In prostate cancer (PC), the androgen receptor (AR) is a key transcription factor at all disease stages, including the advanced stage of castrate-resistant prostate cancer (CRPC). In the present study, we show that GABPα, an ETS factor that is up-regulated in PC, is an AR-interacting transcription factor. Expression of GABPα enables PC cell lines to acquire some of the molecular and cellular characteristics of CRPC tissues as well as more aggressive growth phenotypes. GABPα has a transcriptional role that dissects the overlapping cistromes of the two most common ETS gene fusions in PC: overlapping significantly with ETV1 but not with ERG target genes. GABPα bound predominantly to gene promoters, regulated the expression of one-third of AR target genes and modulated sensitivity to AR antagonists in hormone responsive and castrate resistant PC models. This study supports a critical role for GABPα in CRPC and reveals potential targets for therapeutic intervention.

Is it time for standards and a common data exchange format for digital image analysis?

Digital image analysis is at a crossroads. While the technology has made great strides over the past few decades, there is an urgent need for image analysis to inform the next wave of large scale tissue biomarker discovery studies in cancer. Drawing parallels from the growth of next generation sequencing, this presentation will consider the case for a common language or standard format for storing and communicating digital image analysis data. In this context, image analysis data comprises more than simply an image with markups and attached key-value pair metrics. The desire to objectively benchmark competing platforms or a push for data to be deposited to public repositories much like genomics data may drive the need for a standard that also encompasses granular, cell-by-cell data.

F. G. Teixeira e a comunidade matemática europeia nos séculos XIX-XX

Esta dissertação descreve o processo de integração dos matemáticos portugueses na comunidade matemática internacional no final do século XIX e início do século XX, focando-se na vida e obra do matemático Francisco Gomes Teixeira (1851-1933). Tenciona a ser mais um contributo para o reconhecimento nacional e internacional do matemático Gomes Teixeira analisando a sua obra como matemático e organizador científico em Portugal através de fontes, parcialmente ainda não conhecidas. Para esse efeito analisou-se a evolução histórica que ocorreu no mundo científico daquela época, em particular a formação da comunidade matemática através de iniciativas individuais ou coletivas, muitas vezes acompanhadas pela fundação de revistas e elaboração de manuais que contribuíram para a internacionalização e, de certa forma, para uma estandardização do estudo universitário básico. Em particular foi estudada a situação em Portugal, onde o papel de liderança foi assumido por Gomes Teixeira. Mostra-se como Gomes Teixeira, graças ao seu trabalho, ao seu talento como matemático e à sua atividade como organizador académico, conseguiu reduzir significativamente o isolamento científico de Portugal na área da matemática. Estudou-se em extensão a fundação de revistas científicas em diferentes países, acompanhando a sua evolução desde de revistas nacionais até revistas internacionais. Focando-nos no Jornal de Sciencias Matemáticas e Astronómicas, fundado em 1877 por Gomes Teixeira (mais tarde conhecido internacionalmente como Teixeira’s Journal), acompanhamos detalhadamente a sua transformação de uma revista nacional numa revista internacional, sendo esta transformação comum naquela época à maioria de revistas científicas importantes de outros países como, por exemplo, no caso do Jornal de Crelle, do Jornal de Liouville, ou outros. Estudou-se igualmente o reconhecimento a nível internacional, através de referências estrangeiras, da abordagem original de Gomes Teixeira à Análise Infinitesimal patente nos seus manuais. O interesse de Gomes Teixeira pela teoria das funções analíticas e pelos seus diferentes desenvolvimentos em série manifestou-se no grande número de artigos publicados sobre este tema e encontrou reconhecimento justo pela designação de um teorema que completa resultados de Lagrange e de Laurent como Teorema de Teixeira. Na sua análise do mérito científico de Gomes Teixeira esta dissertação restringiu-se conscientemente nesta área da Análise Matemática, uma vez que um estudo abrangente de toda a obra ultrapassasse o nosso objetivo. Foi também discutido o intenso intercâmbio científico levado a cabo por Gomes Teixeira através de correspondência e troca de publicações ou permuta de revistas com os matemáticos de diferentes países. Esta análise permitiu verificar um aumento da popularidade dos matemáticos portugueses através do incremento do número de artigos publicados no estrangeiro durante quase 30 anos. Uma fonte imprescindível nesta análise foi o Jahrbuch über die Fortschritte der Mathematik, cujas referências (em geral na língua alemã e por isso até agora quase nunca usadas na literatura Portuguesa) documentaram as publicações em quase todas as revistas matemáticas durante os anos da sua existência entre 1868 e 1942. Descreve-se a colaboração de Gomes Teixeira com diferentes organizações internacionais e documenta-se o apreço internacional por parte do mundo académico. Novos documentos traçam o processo de eleição como membro da Academia das Ciências Alemã Leopoldina, sob proposta de Georg Cantor e outros matemáticos alemães. Finalmente, incluí-se uma breve descrição das atividades levadas a cabo na Rússia, em Espanha e na Grécia em prol do processo de internacionalização da comunidade matemática europeia tendo em vista uma melhor contextualização do contributo de Gomes Teixeira para a integração de Portugal neste processo.

Eutrophication and some European waters of restricted exchange

Regions of Restricted Exchange (RREs) are an important feature of the European coastline. They are historically preferred sites for human settlement and aquaculture and their ecosystems, and consequent human use, may be at risk from eutrophication. The OAERRE project (EVK3-CT1999-0002 concerns ‘Oceanographic Applications to Eutrophication in Regions of Restricted Exchange’. It began in July 2000, and studies six sites. Four of these sites are fjords: Kongsfjorden (west coast of Spitzbergen); Gullmaren (Skagerrak coast of Sweden); Himmerfj.arden (Baltic coast of Sweden); and the Firth of Clyde (west coast of Scotland). Two are bays sheltered by sand bars: Golfe de Fos (French Mediterranean); and Ria Formosa (Portuguese Algarve). Together they exemplify a range of hydrographic and enrichment conditions. The project aims to understand the physical, biogeochemical and biological processes, and their interactions, that determine the trophic status of these coastal marine RRE through the development of simple screening models to define, predict and assess eutrophication. This paper introduces the sites and describes the component parts of a basic screening model and its application to each site using historical data. The model forms the starting point for the OAERRE project and views an RRE as a well-mixed box, exchanging with the sea at a daily rate E determined by physical processes, and converting nutrient to phytoplankton chlorophyll at a fixed yield q: It thus uses nutrient levels to estimate maximum biomass; these preliminary results are discussed in relation to objective criteria used to assess trophic status. The influence of factors such as grazing and vertical mixing on key parameters in the screening model are further studied using simulations of a complex‘research’ model for the Firth of Clyde. The future development of screening models in general and within OAERRE in particular is discussed. In addition, the paper looks ahead with a broad discussion of progress in the scientific understanding of eutrophication and the legal and socioeconomic issues that need to be taken into account in managing the trophic status of RREs.

Air-sea CO2 exchange in the Kuroshio and its importance to the global CO2 uptake

Senior thesis written for Oceanography 444

How does globalization affect the tax burden on labour income, capital income and consumption in different welfare regimes? The case of Western and Eastern EU Member States

This article analyzes the effects of globalization on implicit tax rates (ITRs) on labor income, capital income, and consumption in the EU15 and Central and Eastern European New Member States (CEE NMS). We find supportive evidence for an increase in the ITR on labor income in the EU15, but no effect on the ITR on capital income. There is evidence of convergence in terms of the ITR on consumption, as countries with higher than average ITR on consumption respond to globalization by decreasing their tax rates. There are important differences among the welfare regimes within the EU15. Social-democratic countries have decreased the tax burden on capital, but increased that on labor due to globalization. Globalization exerts a pressure to increase taxes on labor income in the conservative and liberal regimes as well. Taxes on consumption decrease in response to globalization in the conservative and social-democratic regimes. In the CEE NMS, there is no effect of globalization on the ITR on labor and capital income, but we find a negative impact on the ITR on consumption in the CEE NMS with higher than average ITR on consumption. (JEL H23, H24, H25, F19, F21)

Monetary policy, exchange rates and stock prices in the Middle East region

A structural vector autoregressive model is employed to investigate the impact of monetary policy and real exchange rate shocks on the stock market performance of Kuwait, Oman, Saudi Arabia, Egypt and Jordan. In order to identify the structural shocks both short run and long run restrictions are applied. Unlike previous literature the contemporaneous interdependence between the financial variables are left unrestricted to give a more accurate depiction of the relationships. The heterogeneity of the results reflect the different monetary policy frameworks and stock market characteristics of these countries. Mainly, monetary policy and the real exchange rate shocks have a significant short run impact on the stock prices of the countries that apply a relatively more independent monetary policy and flexible exchange rates.

Volatility and VaR Forecasting in the Madrid Stock Exchange

This paper provides an empirical study to assess the forecasting performance of a wide range of models for predicting volatility and VaR in the Madrid Stock Exchange. The models performance was measured by using different loss functions and criteria. The results show that FIAPARCH processes capture and forecast more accurately the dynamics of IBEX-35 returns volatility. It is also observed that assuming a heavy-tailed distribution does not improve models ability for predicting volatility. However, when the aim is forecasting VaR, we find evidence of that the Student’s t FIAPARCH outperforms the models it nests the lower the target quantile.