Structure of the PilZ-FimXEAL-c-di-GMP complex responsible for the regulation of bacterial type IV pilus biogenesis

Signal transduction pathways mediated by cyclic-bis(3'→5')-dimeric GMP (c-di-GMP) control many important and complex behaviors in bacteria. C-di-GMP is synthesized through the action of GGDEF domains that possess diguanylate cyclase activity and is degraded by EAL or HD-GYP domains with phosphodiesterase activity. There is mounting evidence that some important c-di-GMP-mediated pathways require protein-protein interactions between members of the GGDEF, EAL, HD-GYP and PilZ protein domain families. For example, interactions have been observed between PilZ and the EAL domain from FimX of Xanthomonas citri (Xac). FimX and PilZ are involved in the regulation of type IV pilus biogenesis via interactions of the latter with the hexameric PilB ATPase associated with the bacterial inner membrane. Here, we present the crystal structure of the ternary complex made up of PilZ, the FimX EAL domain (FimXEAL) and c-di-GMP. PilZ interacts principally with the lobe region and the N-terminal linker helix of the FimXEAL. These interactions involve a hydrophobic surface made up of amino acids conserved in a non-canonical family of PilZ domains that lack intrinsic c-di-GMP binding ability and strand complementation that joins β-sheets from both proteins. Interestingly, the c-di-GMP binds to isolated FimXEAL and to the PilZ-FimXEAL complex in a novel conformation encountered in c-di-GMP-protein complexes in which one of the two glycosidic bonds is in a rare syn conformation while the other adopts the more common anti conformation. The structure points to a means by which c-di-GMP and PilZ binding could be coupled to FimX and PilB conformational states

El erizo de mar Diadema antillarum Phillipi, 1845 influye sobre la diversidad y composición de la comunidad de mega-invertebrados vágiles en fondos rocosos del Archipiélago Canario

Abstract.- The effect of the sea urchin Diadema antillarum density over the diversity and composition of the mobile megainvertebrate community (> 2 cm) inhabiting shallow rocky reefs off the Canary Archipelago (eastern Atlantic) is described. Specifically, it was predicted that (1) high densities of D. antillarum produce a low diversity of the mobile megainvertebrate community, and (2) the composition of this community changes between rocky bottoms (= reefs) under different densities of D. antillarum. The presence of megainvertebrate taxa, and the density of D. antillarum individuals were recorded visually using 2 x 2 m quadrats (n = 16 replicates) in each of 24 locations (three locations in each of the eight main islands of the archipelago), which were visited in four occasions between February-2003 and October-2004. Thritythree taxa of mobile mega-invertebrates were observed. We registered a decline in the richness of such assemblages with increasing densities of D. antillarum (rs = -0.20; P<0.001). Species richness fluctuated considerably (0-16 species) in those locations with low densities of D. antillarum (< 2 ind. m-2). However, species richness was always low (< 9 species) in those locations with high densities of D. antillarum (> 8 ind. m-2). A CAP ordination analysis showed significant differences in the composition of the mega-invertebrate community between rocky bottoms under different densities of D. antillarum, and we registered a negative correlation between the presence of some taxa and the densities of sea urchin. Consequently, the sea urchin D. antillarum influences the diversity and composition of the mobile mega-invertebrate community on rocky bottoms off the Canary Archipelago. Resumen.- Se describe el efecto de la densidad del erizo Diadema antillarum sobre la diversidad y composición de la comunidad de mega-invertebrados vágiles (> 2 cm) que habita fondos rocosos del Archipiélago Canario (Atlántico oriental). Específicamente, se predijo que (1) las altas densidades de D. antillarum producen una baja diversidad de la comunidad de mega-invertebrados vágiles, y (2) la composición de las comunidades de mega-invertebrados varía entre fondos con diferentes densidades de D. antillarum. La presencia de especies mega-invertebradas, y la densidad de individuos de D. antillarum, se registraron visualmente en cuadrados de 2 x 2 m (n = 16 réplicas) en un total de 24 localidades (tres localidades en cada una de las ocho islas principales del archipiélago), visitadas en cuatro ocasiones entre febrero-2003 y octubre-2004. Se observaron 33 taxones de mega-invertebrados vágiles. Se registró una relación inversa entre la riqueza específica y la densidad de D. antillarum (rs = -0,20; P<0,001). En localidades con bajas densidades de D. antillarum (< 2 ind. m-2), la riqueza de especies fluctuó considerablemente, entre 0-16 especies. Sin embargo, en localidades con altas densidades de D. antillarum (> 8 ind. m-2), la riqueza de especies fue siempre baja (< 9 especies). Un análisis de correspondencia canónicas (CAP) mostró diferencias significativas en la composición de la comunidad de mega-invertebrados entre fondos sometidos a diferentes densidades de D. antillarum, y se detectó una correlación negativa entre la presencia de ciertas taxa y las densidades de D. antillarum. Consecuentemente, el erizo D. antillarum influye sobre la diversidad y composición de la comunidad de mega-invertebrados vágiles en fondos rocosos del Archipiélago Canario.

Análisis experimental y teórico de diversas propiedades termofísicas de sistemas ternarios compuestos de glimes alcoholes y DI-N-Butiléter, y de sus componentes binarios

Programa de doctorado: Química Ambiental y Ecológica

Link utili per il corso di Contabilità nazionale

Segnalati durante l'anno agli studenti dal prof. Jacopo Di Cocco a complemento della bibliografia delle Guida.

Il sistema di contabilità nazionale: versioni, elementi e regole base

Lucidi utilizzati a lezione e materiali allegati Versione provvisoria del 15 ottobre 2007 Modulo 1°: Lezioni 10-15