Indicatori di correlazione e di disordine basati sul concetto di entropia

The aim of this work is to carry out an applicative, comparative and exhaustive study between several entropy based indicators of independence and correlation. We considered some indicators characterized by a wide and consolidate literature, like mutual information, joint entropy, relative entropy or Kullback Leibler distance, and others, more recently introduced, like Granger, Maasoumi and racine entropy, also called Sρ, or utilized in more restricted domains, like Pincus approximate entropy or ApEn. We studied the behaviour of such indicators applying them to binary series. The series was designed to simulate a wide range of situations in order to characterize indicators limit and capability and to identify, case by case, the more useful and trustworthy ones. Our target was not only to study if such indicators were able to discriminate between dependence and independence because, especially for mutual information and Granger, Maasoumi and Racine, that was already demonstrated and reported in literature, but also to verify if and how they were able to provide information about structure, complexity and disorder of the series they were applied to. Special attention was paid on Pincus approximate entropy, that is said by the author to be able to provide information regarding the level of randomness, regularity and complexity of a series. By means of a focused and extensive research, we furthermore tried to clear the meaning of ApEn applied to a couple of different series. In such situation the indicator is named in literature as cross-ApEn. The cross-ApEn meaning and the interpretation of its results is often not simple nor univocal and the matter is scarcely delved into by literature, thereby users can easily leaded up to a misleading conclusion, especially if the indicator is employed, as often unfortunately it happens, in uncritical manner. In order to plug some cross-ApEn gaps and limits clearly brought out during the experimentation, we developed and applied to the already considered cases a further indicator we called “correspondence index”. The correspondence index is perfectly integrated into the cross-ApEn computational algorithm and it is able to provide, at least for binary data, accurate information about the intensity and the direction of an eventual correlation, even not linear, existing between two different series allowing, in the meanwhile, to detect an eventual condition of independence between the series themselves.

Investigating the role of single point mutations in the human proteome: a computational study

In the post genomic era with the massive production of biological data the understanding of factors affecting protein stability is one of the most important and challenging tasks for highlighting the role of mutations in relation to human maladies. The problem is at the basis of what is referred to as molecular medicine with the underlying idea that pathologies can be detailed at a molecular level. To this purpose scientific efforts focus on characterising mutations that hamper protein functions and by these affect biological processes at the basis of cell physiology. New techniques have been developed with the aim of detailing single nucleotide polymorphisms (SNPs) at large in all the human chromosomes and by this information in specific databases are exponentially increasing. Eventually mutations that can be found at the DNA level, when occurring in transcribed regions may then lead to mutated proteins and this can be a serious medical problem, largely affecting the phenotype. Bioinformatics tools are urgently needed to cope with the flood of genomic data stored in database and in order to analyse the role of SNPs at the protein level. In principle several experimental and theoretical observations are suggesting that protein stability in the solvent-protein space is responsible of the correct protein functioning. Then mutations that are found disease related during DNA analysis are often assumed to perturb protein stability as well. However so far no extensive analysis at the proteome level has investigated whether this is the case. Also computationally methods have been developed to infer whether a mutation is disease related and independently whether it affects protein stability. Therefore whether the perturbation of protein stability is related to what it is routinely referred to as a disease is still a big question mark. In this work we have tried for the first time to explore the relation among mutations at the protein level and their relevance to diseases with a large-scale computational study of the data from different databases. To this aim in the first part of the thesis for each mutation type we have derived two probabilistic indices (for 141 out of 150 possible SNPs): the perturbing index (Pp), which indicates the probability that a given mutation effects protein stability considering all the “in vitro” thermodynamic data available and the disease index (Pd), which indicates the probability of a mutation to be disease related, given all the mutations that have been clinically associated so far. We find with a robust statistics that the two indexes correlate with the exception of all the mutations that are somatic cancer related. By this each mutation of the 150 can be coded by two values that allow a direct comparison with data base information. Furthermore we also implement computational methods that starting from the protein structure is suited to predict the effect of a mutation on protein stability and find that overpasses a set of other predictors performing the same task. The predictor is based on support vector machines and takes as input protein tertiary structures. We show that the predicted data well correlate with the data from the databases. All our efforts therefore add to the SNP annotation process and more importantly found the relationship among protein stability perturbation and the human variome leading to the diseasome.

Progetto e realizzazione di inserti acetabolari di spessore sottile in UHMWPE reticolato additivato con vitamina E

Il basso tasso d'usura e l'alta resistenza meccanica dell'UHMWPE reticolato e additivato ha posto l'attenzione verso l'uso di teste femorali con diametri maggiori per diminuire il rischio d'impingement e dislocazioni. Questo richiede l'utilizzo d'inserti acetabolari più sottili di quelli attualmente in commercio. In quest'ottica è necessario porre particolare attenzione alla resistenza meccanica d'inserti più sottili, e all'efficacia della vitamina E nel combattere l'effetto dell'ossidazione che si manifesta in seguito al processo di reticolazione. Lo scopo del lavoro è quindi di studiare un inserto più sottile di quelli attualmente in commercio per verificarne le performance. Tale studio è svolto su una serie di taglie (compreso inserto prodotto ad-hoc con spessore di 3,6 mm) con spessore di 5,6 mm e di 3,6 mm dalle quali viene isolato il worst-case tramite analisi FEM. Con prove sperimentali è testata la resistenza meccanica del worst-case, e sono monitorate le deformazioni subite e l'ossidazione del campione. Dagli studi FEM è risultato che le tensioni sono mediamente le stesse in tutti i campioni, anche se si sono registrate tensioni leggermente superiori nella taglia intermedia. A differenza delle attese la taglia in cui si sono riscontrate le tensioni massime è la F (non è l'inserto che ha diametro inferiore). A seguito della messa a punto del modello FEM si è identificato un valore d'attrito inferiore a quello atteso. In letteratura i valori d'attrito coppa-inserto sono più grandi del valore che si è identificato tramite simulazioni FEM. Sulla base dei risultati FEM è isolato il worst-case che viene quindi sottoposto a un test dinamico con 6 milioni di cicli atto a valutarne le performance. Gli inserti di spessore ridotto non hanno riportato alcun danno visibile, e la loro integrità strutturale non è stata modificata. Le considerazioni preliminari sono confermate dalla verifica al tastatore meccanico e dall'analisi chimica, dalle quale non si sono evidenziate particolari problematiche. Infatti, da queste verifiche si rileva che l'effetto del creep nella prova accelerata è pressoché trascurabile, e non si riscontrano variazioni dimensionali rilevanti. Anche dall'analisi chimica dei campioni non si evidenzia ossidazione. I valori d'ossidazione dell'inserto testato sono analoghi a quelli del campione non testato, anche quando viene confrontato con l'inserto in UHMWPE vergine si evidenzia un'ossidazione di molto superiore. Questo prova che la vitamina E inibisce i radicali liberi che quindi non causano l'ossidazione con susseguente fallimento dell'inserto. Dai risultati si vede che i campioni non subiscono danni rilevanti, le deformazioni elastiche monitorate nel test dinamico sono pressoché nulle, come gli effetti del creep misurati analizzando i dati ottenuti al tastatore meccanico. Grazie alla presenza della vitamina E non si ha ossidazione, quella rilevata è vicina a zero ed è da imputare alla lavorazione meccanica. Secondo tali considerazioni è possibile affermare che la riduzione dello spessore degli inserti da 5,6 mm a 3,6 mm non ha conseguenze critiche sul loro comportamento, e non comporta un fallimento del dispositivo.

Analisi e simulazione FEM del processo di infusione sottovuoto "VARI" di una passerella nautica

Tesi svolta presso l'azienda “Riba composites S.r.l.” con lo scopo di riprogettare una passerella nautica utilizzata in imbarcazioni a vela da competizione, attualmente realizzata mediante formatura in autoclave di tessuti pre-impregnati, per il processo produttivo di Vacuum Assisted Resin Injection (VARI). La formatura in autoclave di tessuti pre-­impregnati è una delle tecnologie più onerose, tra i vari processi produttivi nel settore dei materiali compositi, ma assicura proprietà meccaniche e livelli estetici superlativi. L’obiettivo della Riba Composites è ridurre i costi di produzione per offrire un prodotto dalle proprietà analoghe a un prezzo più competitivo. Nella fase di riprogettazione ci siamo affidati a un software di calcolo agli elementi finiti che simula il processo del VARI, l’applicativo PAM-­RTM, del gruppo ESI. Al fine di ottenere una simulazione quanto più precisa possibile del processo, abbiamo realizzato molteplici prove sperimentali per ricavare i valori di compressibilità e permeabilità dei rinforzi da inserire nel software FEM.

Innervazione articolare della spalla e del ginocchio nel cane e modificazioni in corso di osteoartrite

L’osteoartrite (OA) rappresenta un gruppo di patologie a carico delle articolazioni che si stima colpisca più del 20% dei cani con età superiore a un anno. Si tratta di una condizione dove entrano in gioco fattori biomeccanici e biochimici, che si esprime clinicamente con zoppia e dolore. Le ricerche effettuate negli ultimi decenni hanno dimostrato il coinvolgimento dell’innervazione nocicettiva e simpatica nell’insorgenza e nel mantenimento del dolore e dell’infiammazione che caratterizzano l’OA. In questa, infatti, svolgono un ruolo cruciale i neuropeptidi, quali la sostanza P (SP) ed il peptide correlato al gene della calcitonina (CGRP), ed i neuromediatori simpatici liberati alla periferia rispettivamente dalle fibre nocicettive e dalle fibre simpatiche postgangliari. Col presente lavoro ci si è posti l’obiettivo di definire il tipo ed il numero di fibre nervose che innervano l’articolazione della spalla e del ginocchio di cane in soggetti esenti da patologia articolare ed affetti da osteoartrite. Campioni di legamenti e capsula articolare della spalla e della parte craniolaterale della capsula articolare del ginocchio sono stati sottoposto a reazione di doppia immunofluorescenza indiretta volta alla identificazione del numero complessivo di fibre nervose presenti e della percentuale di fibre SP, CGRP e simpatiche positive. I risultati testimoniano come in corso di OA nel cane venga ad alterarsi l’equilibrio tra innervazione sensitiva e simpatica. Infatti, lo studio quantitativo ha evidenziato che nei soggetti affetti da OA si assiste ad un incremento della percentuale di fibre SP positive e ad un decremento di quelle simpatiche. Si ritiene che l’integrità di questi due tipi d’innervazione sia necessaria per l’omeostasi tissutale e che un aumento delle fibre nocicettive e una riduzione di quelle simpatiche abbia un effetto proinfiammatorio e iperalgesico. È stata inoltre riscontrata una differente densità di fibre nervose a seconda del tipo di patologia considerata.

Approcci molecolari e bioinformatici volti alla caratterizzazione di Vgt1, QTL coinvolto nella regolazione dell'epoca di fioritura in Zea Mays

The genetic control of flowering time has been addressed by many quantitative trait locus (QTL) studies. A survey of the results from 29 independent studies reporting information on 441 QTLs led to the production of a QTL consensus map, which enabled the identification of 59 chromosome regions distributed on all chromosomes and shown to be frequently involved in the genetic control of flowering time and related traits. One of the major QTLs for flowering time, the Vegetative to generative transition 1 (Vgt1) locus , corresponds to an upstream (70 kb) non-coding regulatory element of ZmRap2.7, a repressor of flowering. A transposon (MITE) insertion was identified as a major allelic difference within Vgt1. One of the hypotheses is that Vgt1 might function by modifying ZmRap2.7 chromatin through an epigenetic mechanism. Therefore, the methylation state at Vgt1 was investigated using an approach that combines digestion with McrBc, an endonuclease that acts upon methylated DNA, and quantitative PCR. The analyses were performed on genomic DNA from leaves of six different maize lines at four stages of development. The results showed a trend of reduction of methylation from the first to the last stage with the exception of a short genomic region flanking the MITE insertion, which showed a constant and very dense methylation throughout leaf development and for both alleles. Preliminary results from bisulfite sequencing of a small portion of Vgt1 revealed differential methylation of a single cytosine residue between the two alleles. ZmRap2.7 expression was assayed in the four developmental stages afore mentioned for the six genotypes, in order to establish a link between methylation at Vgt1 and ZmRap2.7 transcription. To assess the role of Vgt1 as a transcriptional enhancer, two reporter vectors for stable transformation of plants have been developed.

Valutazione del comportamento a fatica di piatti forati in acciaio in presenza ed assenza di interferenza

Descrizione dell'effetto favorevole sulla resistenza a fatica di un piatto forato della presenza di un accoppiamento per interferenza, rilevato mediante prove sperimentali e simulazioni agli elementi finiti.

Advanced signal and receiver design for next generation OFDM systems

This thesis deal with the design of advanced OFDM systems. Both waveform and receiver design have been treated. The main scope of the Thesis is to study, create, and propose, ideas and novel design solutions able to cope with the weaknesses and crucial aspects of modern OFDM systems. Starting from the the transmitter side, the problem represented by low resilience to non-linear distortion has been assessed. A novel technique that considerably reduces the Peak-to-Average Power Ratio (PAPR) yielding a quasi constant signal envelope in the time domain (PAPR close to 1 dB) has been proposed.The proposed technique, named Rotation Invariant Subcarrier Mapping (RISM),is a novel scheme for subcarriers data mapping,where the symbols belonging to the modulation alphabet are not anchored, but maintain some degrees of freedom. In other words, a bit tuple is not mapped on a single point, rather it is mapped onto a geometrical locus, which is totally or partially rotation invariant. The final positions of the transmitted complex symbols are chosen by an iterative optimization process in order to minimize the PAPR of the resulting OFDM symbol. Numerical results confirm that RISM makes OFDM usable even in severe non-linear channels. Another well known problem which has been tackled is the vulnerability to synchronization errors. Indeed in OFDM system an accurate recovery of carrier frequency and symbol timing is crucial for the proper demodulation of the received packets. In general, timing and frequency synchronization is performed in two separate phases called PRE-FFT and POST-FFT synchronization. Regarding the PRE-FFT phase, a novel joint symbol timing and carrier frequency synchronization algorithm has been presented. The proposed algorithm is characterized by a very low hardware complexity, and, at the same time, it guarantees very good performance in in both AWGN and multipath channels. Regarding the POST-FFT phase, a novel approach for both pilot structure and receiver design has been presented. In particular, a novel pilot pattern has been introduced in order to minimize the occurrence of overlaps between two pattern shifted replicas. This allows to replace conventional pilots with nulls in the frequency domain, introducing the so called Silent Pilots. As a result, the optimal receiver turns out to be very robust against severe Rayleigh fading multipath and characterized by low complexity. Performance of this approach has been analytically and numerically evaluated. Comparing the proposed approach with state of the art alternatives, in both AWGN and multipath fading channels, considerable performance improvements have been obtained. The crucial problem of channel estimation has been thoroughly investigated, with particular emphasis on the decimation of the Channel Impulse Response (CIR) through the selection of the Most Significant Samples (MSSs). In this contest our contribution is twofold, from the theoretical side, we derived lower bounds on the estimation mean-square error (MSE) performance for any MSS selection strategy,from the receiver design we proposed novel MSS selection strategies which have been shown to approach these MSE lower bounds, and outperformed the state-of-the-art alternatives. Finally, the possibility of using of Single Carrier Frequency Division Multiple Access (SC-FDMA) in the Broadband Satellite Return Channel has been assessed. Notably, SC-FDMA is able to improve the physical layer spectral efficiency with respect to single carrier systems, which have been used so far in the Return Channel Satellite (RCS) standards. However, it requires a strict synchronization and it is also sensitive to phase noise of local radio frequency oscillators. For this reason, an effective pilot tone arrangement within the SC-FDMA frame, and a novel Joint Multi-User (JMU) estimation method for the SC-FDMA, has been proposed. As shown by numerical results, the proposed scheme manages to satisfy strict synchronization requirements and to guarantee a proper demodulation of the received signal.

Studio sull’evoluzione temporale degli impatti dell’inceneritore di Coriano (Rimini) mediante Life Cycle Assessment

Lo scopo del progetto di tesi è stato quello di indagare come è variato nel tempo l’impatto dell’impianto di incenerimento situato a Coriano, in provincia di Rimini, a seguito dell’introduzione di soluzioni tecnologiche sempre più evolute al fine di una maggiore tutela ambientale. Lo studio è stata condotto utilizzando la tecnica del Valutazione del Ciclo di Vita (LCA, Life Cycle Assesment), che consente di quantificare gli impatti utilizzando indicatori precisi e di considerare il processo in tutti i suoi dettagli. I risultati evidenziano una progressiva diminuzione dell’impatto complessivo dell’impianto, dovuto sia alle operazioni di adeguamento relative alle attività di incenerimento, sia all’introduzione di un sistema sempre più efficiente di recupero energetico. I confini del sistema sono infatti stati ampliati per poter includere nello studio l’energia elettrica generata dal recupero del calore prodotto durante la combustione. Sono stati valutati rapporti causa-effetto tra i risultati ottenuti ed alcune informazioni correlate al processo, quali composizione dei rifiuti e variazione temporale del mix energetico in Italia. Sono infine state effettuate valutazioni relativamente alla comparazione dell’impianto studiato con altre realtà territoriali ed impiantistiche e sono state prese in esame alcune tra le tecnologie più innovative applicabili al processo, soprattutto per quel che riguarda la depurazione dei fumi.

Architectural development and dry matter production in a multisite trial on single and multiaxis apple trees (Malus domestica Borkh) grafted on different rootstocks

In two Italian sites, multiaxis trees slightly reduced primary axis length and secondary axis length of newly grafted trees, and increased the number of secondary shoots. The total length, node production, and total dry matter gain were proportional to the number of axis. Growth of both primary and secondary shoots, and dry matter accumulation, have been found to be also well related to rootstock vigour. A great variability in axillary shoot production was recorded among different environments. Grafted trees had higher primary growth, secondary axis growth, and dry matter gain than chip budded trees. Stem water potential measured in the second year after grafting was not affected by rootstocks or number of leaders. Measurements performed in New Zealand (Hawke’s Bay) during the second year after grafting revealed that both final length and growth rate of primary and secondary axis were related to the rootstock rather than to the training system. Dwarfing rootstocks reduced the number of long vegetative shoots and increased the proportion of less vigorous shoots.

Il giudizio di bilanciamento tra interessi pubblici e privati: un modello formale.

In this work, I argue that administrative discretional decision-making, achieving a public interest to protect, is an evaluation process that occurs through the reasonable and proportional comparison of several private (secondary) interests conflicting with a single public (primary) interest. I suggest that the dynamics of weighing competing interests are similar to the procedure for balancing constitutional rights. Thus, drawing on Robert Alexy's constitutional balancing model, I propose a model that is applicable to discretionary administrative decisions, in which the outcome of the proportional weighing of secondary interests works as a "moderation factor" for the primary interest. In my model, the outcomes of the discretional process can be converted into numerical values, simplifying decision consistency so as to make it simple, complete and reasonable at the same time.

Attività autonomica cardiaca e funzioni neurocognitive nei pazienti affetti da sindrome delle gambe senza riposo (RLS): effetto dei farmaci dopamino agonisti in acuto e a lungo termine

Several studies showed that sleep loss/fragmentation may have a negative impact on cognitive performance, mood and autonomic activity. Specific neurocognitive domains, such as executive function (i.e.,prefrontal cortex), seems to be particularly vulnerable to sleep loss. Pearson et al.(2006) evaluated 16 RLS patients compared to controls by cognitive tests, including those particularly sensitive to prefrontal cortical (PFC) functioning and sleep loss. RLS patients showed significant deficits on two of the three PFC tests. It has been recently reported that RLS is associated with psychiatric manifestations. A high prevalence of depressive symptoms has been found in patients with RLS(Rothdach AJ et al., 2000). RLS could cause depression through its adverse influences on sleep and energy. On the other hand, symptoms of depression such as sleep deprivation, poor nutrition or lack of exercise may predispose an individual to the development of RLS. Moreover, depressed patients may amplify mild RLS, making occasional RLS symptoms appear to meet threshold criteria. The specific treatment of depression could be also implicated, since antidepressant compounds may worsen RLS and PLMD(Picchietti D et al., 2005; Damsa C et al., 2004). Interestingly, treatments used to relieve RLS symptoms (dopamine agonists) seem to have an antidepressant effects in RLS depressed patients(Saletu M et al., 2002&2003). During normal sleep there is a well-regulated pattern of the autonomic function, modulated by changes in sleep stages. It has been reported that chronic sleep deprivation is associated with cardiovascular events. In patients with sleep fragmentation increased number of arousals and increased cyclic alternating pattern rate is associated with an increase in sympathetic activity. It has been demonstrated that PLMS occurrence is associated with a shift to increased sympathetic activity without significant changes in cardiac parasympathetic activity (Sforza E et al., 2005). An increased association of RLS with hypertension and heart disease has been documented in several studies(Ulfberg J et al., 2001; Ohayon MM et al., 2002).