Accurate sodium bisulfite sequencing in plants.

DNA cytosine methylation is a conserved epigenetic modification frequently correlating with transcriptional silencing in a wide variety of eukaryotic organisms. Sodium bisulfite treatment of DNA converts unmethylated cytosine to uracil, while 5-methylated cytosine is protected. We describe techniques that ensure reliable sequencing data following sodium bisulfite conversion and to avoid common pitfalls such as amplification of unconverted DNA and inclusion of sibling clones.

Meiosis in flowering plants and other green organisms.

Sexual eukaryotes generate gametes using a specialized cell division called meiosis that serves both to halve the number of chromosomes and to reshuffle genetic variation present in the parent. The nature and mechanism of the meiotic cell division in plants and its effect on genetic variation are reviewed here. As flowers are the site of meiosis and fertilization in angiosperms, meiotic control will be considered within this developmental context. Finally, we review what is known about the control of meiosis in green algae and non-flowering land plants and discuss evolutionary transitions relating to meiosis that have occurred in the lineages giving rise to the angiosperms.

Grid-refined LES predictions for Fan-OGV broadband noise

This work forms part of a project on the use of large eddy simulation (LES) for broadband rotor-stator interaction noise prediction. In this paper, we focus on LES calculations of noise sources on and close to a blade trailing edge. We consider two test cases; one an isolated NACA0012 airfoil in flow, and the other an industry-standard rotating fan. In the first case, turbulent mean and RMS velocities and energy spectra at different locations are compared with those from experiment. 1,2The sound generated by the unsteady pressure fluctuations on the airfoil surface and by the flow turbulence will be predicted using a Ffowcs Williams Hawkings (FW-H) surface. In the second case, unsteady flow and acoustic fields around the blade passage 3 are presented for a refined mesh, and the rotor-stator tonal noise will be predicted by using the rotor-wake mean velocity profile and the methodology described in Lloyd & Peake 4. Copyright © 2009 by Qinling Li, Nigel Peake & Mark Savill.

A Pressure-Correction Method And Its Applications On An Unstructured Chimera Grid

In this paper, an unstructured Chimera mesh method is used to compute incompressible flow around a rotating body. To implement the pressure correction algorithm on unstructured overlapping sub-grids, a novel interpolation scheme for pressure correction is proposed. This indirect interpolation scheme can ensure a tight coupling of pressure between sub-domains. A moving-mesh finite volume approach is used to treat the rotating sub-domain and the governing equations are formulated in an inertial reference frame. Since the mesh that surrounds the rotating body undergoes only solid body rotation and the background mesh remains stationary, no mesh deformation is encountered in the computation. As a benefit from the utilization of an inertial frame, tensorial transformation for velocity is not needed. Three numerical simulations are successfully performed. They include flow over a fixed circular cylinder, flow over a rotating circular cylinder and flow over a rotating elliptic cylinder. These numerical examples demonstrate the capability of the current scheme in handling moving boundaries. The numerical results are in good agreement with experimental and computational data in literature. (C) 2007 Elsevier Ltd. All rights reserved.

Shallow Water Model On Cubed-Sphere By Multi-Moment Finite Volume Method

A global numerical model for shallow water flows on the cubed-sphere grid is proposed in this paper. The model is constructed by using the constrained interpolation profile/multi-moment finite volume method (CIP/MM FVM). Two kinds of moments, i.e. the point value (PV) and the volume-integrated average (VIA) are defined and independently updated in the present model by different numerical formulations. The Lax-Friedrichs upwind splitting is used to update the PV moment in terms of a derivative Riemann problem, and a finite volume formulation derived by integrating the governing equations over each mesh element is used to predict the VIA moment. The cubed-sphere grid is applied to get around the polar singularity and to obtain uniform grid spacing for a spherical geometry. Highly localized reconstruction in CIP/MM FVM is well suited for the cubed-sphere grid, especially in dealing with the discontinuity in the coordinates between different patches. The mass conservation is completely achieved over the whole globe. The numerical model has been verified by Williamson's standard test set for shallow water equation model on sphere. The results reveal that the present model is competitive to most existing ones. (C) 2008 Elsevier Inc. All rights reserved.

Sediment incipience in turbulence generated in a square tank by a vertically oscillating grid

The failure of hydraulic structures in many estuaries and coastal regions around the world has been attributed to sediment transport and local scour. The sediment incipience in homogenous turbulence generated by oscillating grid is studied in this paper. The turbulent flow is measured by particle tracer velocimetry (PTV) technique. The integral length scale and time scale of turbulence are obtained. The turbulent flow near the wall is measured by local optical magnification. The sediment incipience is described by static theory. The relationship of probability of sediment incipience and the turbulent kinetic energy were obtained experimentally and theoretically. The distribution of the turbulent kinetic energy near the wall is found to obey the power law and the turbulent energy is further identified as the dynamic mechanism of sediment incipience.

Calidad fitosanitaria de semilla de repollo (Brassica oleracea L.) en tres regiones de Nicaragua y respuesta de la semilla infestada con Xantomonas campestris pv. campestris a tratamientos térmico y osmotérmico

Con el objetivo de conocer si las semillas de las variedades de repollo sembradas por los productores y las que venden las casas comerciales son, portadores de la enfermedad “quema o chamusca” causada por Xanthomonas campestri pv. Campestri (Xcc) y para buscar un método de desinfección que permita obtener semillas libres del patógeno, se procedió a la recolección de mientras de semillas de las diferentes variedades que se siembran y se ofertan en las principales regiones repollaras (I, IV; y VI) y casas comerciales del país. A las 24 muestras recolectadas se les realizaron pruebas de germinación y aislamiento del patógeno; luego se procedió a la identificación de las bacterias aisladas realizándose las pruebas fisiológicas y bioquímicas recolectadas por Lelliot y Stead (1987). Los resultados de este análisis indicaron que de las 24 muestras recolectadas, 18 muestras estaban infestadas con la bacteria Xanto monas campestri Pv. campestri. Determinada la presencia de Xcc, se procedió a la desinfección de las semillas para lo cual se seleccionaron tres variedades infectadas con la bacteria sometiéndola a tratamientos térmicos con agua caliente a diferentes temperaturas (50,52 y 55 ºC), posteriormente se repitieron los mismos tratamientos pero se le agrego al agua un protector de la germinaci0n conocido como Polythylenglycol (PEG-6000) a una dosis de 314 gr. De PEG por litro de agua. Posterior a los tratamientos se les realizaron pruebas de germinación y aislamiento a la semilla para ver el efecto de los tratamientos; a los resultados obtenidos se les realizaron análisis de regresión múltiple y contraste ortogonales. Los resultados indicaron que el tratamiento juega un papel muy importante en la disminución de la cantidad del inóculo presente en la semilla pero esto tuvo en efecto negativo sobre el porcentaje de germinación de las semillas, pero cuando se adicionó PEG-6000 al agua, este ejerció un efecto protectivo de la germinación durante el tratamiento térmico. Los resultados de este estudio mostraron que el mayor tratamiento es el que se efectuó con agua caliente a 50ºc durante 25 minutos más adición de PEG.

Tolerancia de diferentes variedades de repollo (Brassica oleracea L.) a la bacteriosis causada por Xanthomonas campestris pv. campestris P.

Con el objetivo determinar el grado de tolerancia de diferentes variedades de repollo a la bacteriosis (xanthomonas campestri pv. Campestri) y evaluar su adaptabilidad y rendimiento en la zona de la concepción , Masaya, se establecieron ensayos en invernadero y campo en el periodo comprendido entre el 17 de abril al 17 de noviembre de 1989. Se evaluaron 10 variedades de repollo bajo las condiciones de inoculación artificial en el invernadero de las cuales la variedad superette resulto la más susceptible a la bacteriosis; las variedades yasseng e izalco resultaron las más tolerantes. Otras variedades como King kole, Premium y potye resultaron menos susceptibles. A nivel de campo se evaluaron 5 variedades seleccionadas de acuerdo a su grado de tolerancia a bacteriosis y representatividad en el país de las cuales fueron superette, izalco resulto más tolerante a la bacteriosis mientras que la variedad superette mostro alta susceptibilidad seguido por King kole, Premium y copenhagen. Los rendimientos en las variedades susceptibles a la bacteriosis resultaron bajos comparados con izalco.