Features and trend of loss of promoter-associated CpG islands in the human and mouse genomes

CpG islands (CGIs) are often considered as gene markers, but the number of CGIs varies among mammalian genomes that have similar numbers of genes. In this study, we investigated the distribution of CGIs in the promoter regions of 3,197 human-mouse ortholo

Impact of community-based fisheries management practices on production and species diversity in Turag-Bangshi basin floodplains in Kaliakoir, Gazipur, Bangladesh

The study was conducted to investigate the communities perception and compliance to community-based fisheries management (CBFM) in Turag-Bangshi floodplains under Kaliakoir, Gazipur District. Measures such as ban on use of the harmful fishing gears, seasonal fishing closure, halt of fry fishing, halt of dewatering of beels and the impact of establishment of sanctuaries on fish production and species diversity were introduced by MACH project. Almost all members of the communities in Turag-Bangshi MACH (Management of Aquatic Ecosystem through Community Husbandry) site welcomed the introduction and complied with the implementation of all management measures which helped stopped use of harmful fishing gears, ensured survival and breeding of brood fish in the rainy season, protected and allowed fry to grow big, restored lost and degraded fisheries and organized communities for sustainable development of the fisheries. A total of 51 species of fishes were found in Makosh beel (natural depression). Among these, small indigenous species (SIS) under Cyprinidae family (Puntius sophore) was the most dominant. Many species available in the past recorded disappeared from the Makosh beel due to loss of habitat and industrial pollution that damaged spawning and nursery grounds of fish. Introduction of some selective native endangered species (Nandus nandus, Notopterus notopterus, Ompok pabda and Labeo calbasu) by MACH in the Turag-Bangshi water bodies increased diversity of species from 82 to 95. Over a period of five years during MACH intervention, the average production remained nearly 200% higher than the baseline production of 57 kg/ha to present 207 kg/ha due to maintaining sanctuaries and the closed fishing seasons. Per capita daily fish consumption of the surrounding communities also increased by 78% (from 27 to 48 g/person/day) which is much higher than the national average fish consumption in Bangladesh. The implementation of community-based MACH project management measures substantially improved fish habitat, production, consumption and socio-economic conditions of the surrounding communities. The model can be used to improve the floodplains of Bangladesh.

Predatory behaviour of a perch, Nandus nandus (Ham.)

Predatory behaviour of Nandus nandus was studied by offering Cyprinus carpio as prey. The study was conducted with six N. namdus (8.2 ±0.2 cm and 7.60 ±0.3g) represented as P 1, P 2, P 3, P 4, P 5 and P 6. Three size categories of prey (C. carpio) such as small (2.0 ±0.1 cm and 0.23 ±0.01g), large (3.6 ±0.1 cm and 0.57 ±O.O.lg) and mixed group consisting of both small and large prey were used for 14 days of trial. Predatory behavior was classified as targeting, driving, catching, handling, resting and next attempt of catching prey. After introduction of prey into the aquarium predators followed the movement of preys by eye movements and tried to target smaller one first. The predator grasped the head of the prey by its jaws by a drive and engulfed it wholly into the mouth. The average handling time (time taken to manipulate and swallow prey from capture to ceasation of pharyngeal movement) was 42±2 sec and 47±2 sec for small and large prey respectively. N. nandus were ingested more small prey than large prey though the size classes were equally available in case of mixed prey used. Although the prey consumption was higher in number when small prey were ingested but in weight the consumption was higher when ingested large size of prey. The study indicated that N. nandus, ingested more small prey and grasped the headfirst.

Molecular Phylogeny and Phylogeography of Suidae

猪科动物是最为昌盛的哺乳动物之一,但它们的分类及系统发育关系却尚待解决。为此,用PCR直接测序法测定了一个红河猪(Potamochoerusporcus)、一个马来西亚野猪(Susbarbatus)以及数头欧亚野猪(Susscorfa)线粒体细胞色素b全序列1140bp。结合从GenBank中获得的其他猪科物种胞色素b序列,用邻接法和最大简约法构建了猪科物种的系统发育关系,其结果显示苏拉威西鹿猪与其他猪科物种为姐妹群的关系。非洲物种疣猪和河猪聚为一枝,而欧亚猪属物种聚为另一支。各物种在系统发育关系中的位置与它们的地理分布对应。猪属物种可以被划分为3个种组:分布于菲律宾群岛、苏拉威西岛及其邻近岛屿的猪属物种形成一个种组,包括苏拉威西岛疣猪、菲律宾疣猪和印度尼西亚疣猪;欧亚野猪种组,包括欧亚野猪和姬猪;须猪和爪哇疣猪形成一个种组。

灵长类泌乳刺激素基因的插曲式进化

采用PCR 方法从4 个灵长目物种中获得了泌乳刺激素(Prolactin, PRL)基因的第2~5 外显子的序 列, 结合GenBank 中已有的序列, 计算了PRL 基因在灵长目中的氨基酸替换速率. 对异义替换速率和 同义替换速率进行比较的结果显示, 在灵长目进化的过程中未发现任何一个枝系有正选择作用的迹象. 此外, 用最大似然(Maximum-Likelihood, ML)法没有检验到任何一个受到正选择作用的位点; 在快速 进化时期内发生的所有32 个氨基酸替换中, 只有2 个位点包含在功能重要的40 个氨基酸之内, 提示所 发生的氨基酸替换主要集中在功能上并不是很重要的位点上. 此外, 在PRL 基因的快速进化过程中, PRL 的部分功能被胎盘泌乳刺激素(placental lactogen, PL)所替代. 基于以上原因, 推测发生在灵长目 PRL 基因的快速进化很可能是选择压力的放松, 而不是正选择作用的结果.

A bacteriological study of the natural flora of edible oyster, Crassostrea madrasensis

The total viable bacterial populations in the oysters and the sea water from the edible oyster farm at Tuticorin were in the range of 10 super(3) to 10 super(4) per ml and 1 super(2) to 10 super(3) per ml respectively. The maximum most probable number of faecal coliform recorded during the one year period of study of both the oysters and seawater were 33 per 100 ml. Pathogenic bacteria (Salmonella sp., Vibrio cholerae, coagulase positive staphylococci and faecal streptococci were absent in oysters and farm water. Study of 197 (98 taken from oyster liquid and 99 from oyster farm water) randomly isolated cultures indicated that gram negative asporogenus rod-like bacteria of the Vibrio, Flavobacterium, Achromobacter and Pseudomonas groups were the dominant flora of the oyster liquid as well as seawater.

一种改进的动物线粒体DNA提取方法

线粒体 DNA (mtDNA)已被广泛用于动物群体遗传学和进化生物学的研究, 并取得了许多有意义的结果. 有效的 mtDNA 提取方法无疑是开展这方面研究的前提. 关于动物 mtDNA 的提取方法, 国内外已有不少报导. 概括起来, 可分为: 1)氯化铯超速离心法, 2)柱层析法, 3)DNase法, 4)碱变性法. 该文报道了一种改进的碱变性提取法, 与其它方法相比, 具有应用范围广、简便、经济等优点。

Distribution of plankton population in shrimp ghers of Bagherhat, Bangladesh

Analysis of plankton sample recorded a total of 5 classes’ phytoplankton viz Bacillariophyceae, Chlorophyceae, Cyanophyceae, Dinophyceae, and Polyhymenophorea. Total 50 phytoplankton species were identified. Among the phytoplankton 18 species belonged to Bacillariophyceae, 12 to Chlorophyceae, 8 to Cyanophyceae, 7 to Dinophyceae, and 5 to Polyhymenophorea. Bacillariophyceae was the dominant group of phytoplankton throughout the study period. Toxin producing dinoflagelates were recorded from the shrimp ghers. A total of 11 kinds of different zooplankton genera were recorded, 4 of which were belonged to Copepoda, 3 to Cladocera, 3 to Rotifera and 1 to Decapoda. Copepoda was the dominant group among the zooplankton which was followed by Rotifera and Decapoda. Temperature varied from 27°C to 32°C, transparency 24.5-29.6 cm and pH 6.7 to 9. Salinity fluctuated from 12 to 32.5‰ in both ghers. PO sub(4)-P and NO sub(3)-N ranged from 0.9 to 4.2 ppm.

Quantitative analysis of land mammal zoogeographical regions in China and adjacent regions

Quantitative analysis of land mammal zoogeographical regions in China and adjacent regions. Zoological Studies 43(1): 142-160. In this paper, our aim was to determine, by means of quantitative analysis, the distribution patterns of the land mammals in China and, adjacent regions using physiographical regions as operative geographical units (OGUs). Based, on the pre-sence or absence of 11 orders, 42 families, 197 genera, and 577 species of land mammals in their zoogeographical regions, which were used as OGUs, we studied the biotic boundary between the Oriental Region (OR) and the Palaearctic Region (PR), as well as subregion boundaries. The boundary's statistical significance was tested by G-test as described by McCoy et al. A significantly strong biotic boundary was found to separate the PR from the OR, and there is a weak biotic boundary in the PR, which divides it into 2 subregions. We concluded that the biotic boundary which separates the PR and OR is a strong boundary. We suggest that the Qinghai-Xizang Plateau should be regarded as a subregion of the PR, which can embody its characteristics of high elevations and a frigid climatic, which is called the Qing-Zang subregion of the PR (QZSP).

Configural processing of different topologically structured figures: an ERP Study

According to Chen's theory, topological differences are perceived faster than feature differences in early visual perception. We hypothesized that topological perception is caused by the sensitivity in discriminating figures with and without "holes". An E

牛血清白蛋白对小鼠原核期胚胎玻璃化冷冻的影响

以小鼠原核期胚胎为对象, 以胚胎的存活率、卵裂率、囊胚率以及囊胚细胞数作为检测指标, 在M2 液的基础上添加8 种浓度(0 , 2 , 4 , 8 , 16 , 32 , 64 , 96 mg/ mL) 牛血清白蛋白(BSA) 配置防冻液, 探讨防 冻液和玻璃化冷冻后对胚胎发育的影响。BSA 防冻液对胚胎发育影响的实验结果表明, 8 个浓度组间以及与对 照组间胚胎的卵裂率、囊胚率以及囊胚细胞数无显著差异( P > 0105) , 说明在防冻液中加入一定浓度的BSA 对小鼠胚胎无毒性作用。防冻液经玻璃化冷冻后对胚胎发育影响的实验表明, 8 个浓度组间冷冻胚胎复苏后的 存活率、卵裂率、囊胚率及囊胚细胞数无显著差异( P > 0105) 。表明BSA 在这种防冻液中没有明显的保护作 用。从经济、实用、生物安全角度考虑, 不支持在玻璃化防冻液中添加BSA。

抑郁症首次发病患者静息态脑功能局部一致性的研究

下载PDF阅读器目的 利用功能磁共振(fMRI)和局部一致性(regional homogeneity,ReHo)探讨抑郁症首次发病(以下简称首发)患者在静息态脑功能是否存在异常及异常部位.方法 对34例符合美国精神疾病诊断与统计手册第4版诊断标准的首发抑郁症患者(抑郁症组)和34名性别、年龄、文化程度匹配的健康志愿者(对照组)进行静息态fMRI扫描.结果 抑郁症组静息态脑血氧水平依赖信号的ReHo高于对照组的脑区有左侧额叶眶回、顶下小叶、颞上回,右侧额内侧回、顶下小叶、小脑后叶;低于对照组的脑区有左颞下回、右颞上同和胼胝体、双侧后扣带回(P＜0.005,K≥10).结论首发抑郁症患者在静息态存在多个腩区功能活动的异常,并可能和抑郁症的病理机制有关.