Evolutionary dynamics of retrotransposable elements Rex1, Rex3 and Rex6 in neotropical cichlid genomes

Background: Transposable elements (TEs) have the potential to produce broad changes in the genomes of their hosts, acting as a type of evolutionary toolbox and generating a collection of new regulatory and coding sequences. Several TE classes have been studied in Neotropical cichlids; however, the information gained from these studies is restricted to the physical chromosome mapping, whereas the genetic diversity of the TEs remains unknown. Therefore, the genomic organization of the non-LTR retrotransposons Rex1, Rex3, and Rex6 in five Amazonian cichlid species was evaluated using physical chromosome mapping and DNA sequencing to provide information about the role of TEs in the evolution of cichlid genomes. Results: Physical mapping revealed abundant TE clusters dispersed throughout the chromosomes. Furthermore, several species showed conspicuous clusters accumulation in the centromeric and terminal portions of the chromosomes. These TE chromosomal sites are associated with both heterochromatic and euchromatic regions. A higher number of Rex1 clusters were observed among the derived species. The Rex1 and Rex3 nucleotide sequences were more conserved in the basal species than in the derived species; however, this pattern was not observed in Rex6. In addition, it was possible to observe conserved blocks corresponding to the reverse transcriptase fragment of the Rex1 and Rex3 clones and to the endonuclease of Rex6. Conclusion: Our data showed no congruence between the Bayesian trees generated for Rex1, Rex3 and Rex6 of cichlid species and phylogenetic hypothesis described for the group. Rex1 and Rex3 nucleotide sequences were more conserved in the basal species whereas Rex6 exhibited high substitution rates in both basal and derived species. The distribution of Rex elements in cichlid genomes suggests that such elements are under the action of evolutionary mechanisms that lead to their accumulation in particular chromosome regions, mostly in heterochromatins. © 2013 Schneider et al.; licensee BioMed Central Ltd.

Dynamics of rotation of super-Earths

We numerically investigate the dynamics of rotation of several close-in terrestrial exoplanet candidates. In our model, the rotation of the planet is disturbed by the torque of the central star due to the asymmetric equilibrium figure of the planet. We model the shape of the planet by a Jeans spheroid. We use surfaces of section and spectral analysis to explore numerically the rotation phase space of the systems adopting different sets of parameters and initial conditions close to the main spin-orbit resonant states. One of the parameters, the orbital eccentricity, is critically discussed here within the domain of validity of orbital circularization timescales given by tidal models. We show that, depending on some parameters of the system like the radius and mass of the planet, eccentricity etc., the rotation can be strongly perturbed and a chaotic layer around the synchronous state may occupy a significant region of the phase space. 55 Cnc e is an example. © 2013 Springer Science+Business Media Dordrecht.

Cosmological dynamics of tachyonic teleparallel dark energy

A detailed dynamical analysis of the tachyonic teleparallel dark energy model, in which a noncanonical scalar field (tachyon field) is nonminimally coupled to gravitation, is performed. It is found that, when the nonminimal coupling is ruled by a dynamically changing coefficient α≡f ,φ/√f, with f(φ) an arbitrary function of the scalar field φ, the Universe may experience a field-matter-dominated era φMDE, in which it has some portions of the energy density of φ in the matter dominated era. This is the most significant difference in relation to the so-called teleparallel dark energy scenario, in which a canonical scalar field (quintessence) is nonminimally coupled to gravitation. © 2013 American Physical Society.

Dynamics of bone healing after osteotomy with piezosurgery or conventional drilling - histomorphometrical, immunohistochemical, and molecular analysis

Background: Piezosurgery is an osteotomy system used in medical and dental surgery. Many studies have proven clinical advantages of piezosurgery in terms of quality of cut, maneuverability, ease of use, and safety. However, few investigations have tested its superiority over the traditional osteotomy systems in terms of dynamics of bone healing. Therefore, the aim of this study was to evaluate the dynamics of bone healing after osteotomies with piezosurgery and to compare them with those associated to traditional bone drilling.Methods: One hundred and ten rats were divided into two groups with 55 animals each. The animals were anesthetized and the tibiae were surgically exposed to create defects 2 mm in diameter by using piezosurgery (Piezo group) and conventional drilling (Drill group). Animals were sacrificed at 3, 7, 14, 30 and 60 days post-surgery. Bone samples were collected and processed for histological, histomorphometrical, immunohistochemical, and molecular analysis. The histological analysis was performed at all time points (n = 8) whereas the histomorphometrical analysis was performed at 7, 14, 30 and 60 days post-surgery (n = 8). The immunolabeling was performed to detect Vascular Endothelial Growth Factor (VEGF), Caspase-3 (CAS-3), Osteoprotegerin (OPG), Receptor Activator of Nuclear Factor kappa-B Ligand (RANKL), and Osteocalcin (OC) at 3, 7, and 14 days (n = 3). For the molecular analysis, animals were sacrificed at 3, 7 and 14 days, total RNA was collected, and quantification of the expression of 21 genes related to BMP signaling, Wnt signaling, inflammation, osteogenenic and apoptotic pathways was performed by qRT-PCR (n = 5).Results: Histologically and histomorphometrically, bone healing was similar in both groups with the exception of a slightly higher amount of newly formed bone observed at 30 days after piezosurgery (p < 0.05). Immunohistochemical and qRT-PCR analyses didn't detect significant differences in expression of all the proteins and most of the genes tested.Conclusions: Based on the results of our study we conclude that in a rat tibial bone defect model the bone healing dynamics after piezosurgery are comparable to those observed with conventional drilling. © 2013 Esteves et al.; licensee BioMed Central Ltd.

La dinámica del deterioro social en América Latina y el Caribe en los años ochenta = The dynamics of social deterioration in Latin America and the Caribbean in the 1980s

Incluye Bibliografía

Latin America and the Caribbean: the dynamics of population and growth

Incluye Bibliografía

América Latina y el Caribe: dinámica de la población y desarrollo = Latin America and the Caribbean: the dynamics of population and development

Incluye Bibliografía

Theoretical perspectives on the dynamics of communities with intraguild predation

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

América Latina: dinámica de la población = Latin America: dynamics of the population

Publicación bilingüe (Español e inglés)

The dynamics of a frictionally-dominated Amazonian estuary

A hidrodinâmica, morfologia e sedimentologia do estuário do Taperaçu foram investigadas. Este é um entre vários estuários do litoral amazônico que integram a maior extensão contínua de manguezais do mundo, apresentando uma descarga de água doce muito reduzida, atípica para a região. Os resultados revelam grandes bancos arenosos que ocupam em grande parte a porção central do estuário. Areias muito finas e bem selecionadas de origem marinha prevalecem. Fases de enchente mais curtas, com velocidades de corrente substancialmente mais altas, são observadas na porção superior do estuário, como esperado para um estuário raso e dominado por fricção. Por outro lado, uma vazante mais intensa poderia ocorrer como resultado de grandes áreas de manguezais associadas e intenso preenchimento estuarino, sendo que ambas as condições são observadas no Taperaçu. Neste caso, a prevalência da enchente parece estar associada à ausência de uma descarga fluvial efetiva. Além disso, alguns canais de maré conectam o Taperaçu com seu vizinho estuário do Caeté, o que contribuiria para o domínio de enchente. Como um todo, os resultados demonstram uma complexa interação de aspectos de configuração (fricção, drenagem fluvial, conexões com estuários vizinhos, preenchimento e grandes áreas intermareais) na determinação dos padrões hidrodinâmicos, contribuindo para o entendimento dos estuários da região amazônica.

Nonlinear dynamics of within-host parasite competition

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

A study of the dynamics of quantum correlations

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Dynamics of the interaction between body fluid and Ti cp: the influence of surface functionalization in the first stages of osseointegration

INTRODUCTION: Regenerative therapies using biomaterials require accurate information on interactions between the implanted material and the human body. To improve the process of bone regeneration it is necessary to obtain a better understanding of the influence of the surfaces on the early stages of osseointegration. This work aims to investigate the dynamic interaction between simulated body fluid (SBF) and titanium surfaces (Ti cp) immediately after their first contact. METHODS: Ti cp samples were passed through physicochemical treatments after immersion in acid solution, alkaline solution and solutions containing TiO2 and Ca2+, to obtain three different surfaces. These were characterized by electron microscopy and free energy estimates. The evaluation of the interaction with SBF was performed by measuring the dynamic contact angles after contacting the surfaces. RESULTS: The effects of SBF wettability were more significant on surfaces according to high energy estimates. A comparative analysis of the three types of surfaces showed that fluid spreading was greater in samples with greater polar components, indicating that the surface nature influences interactions in the early stages of osseointegration. CONCLUSION: The results indicate the influence of polar interactions in the dynamic wettability of the SBF. It is possible that these interactions can also influence cellular viability on surfaces. Based on these results, new experiments are being designed to improve the presented methodology as a tool for the evaluation of biomaterials without the need for in vivo experiments.