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Epidemiological studies have led to the hypothesis that major risk factors for developing diseases such as hypertension, cardiovascular disease and adult-onset diabetes are established during development. This developmental programming hypothesis proposes that exposure to an adverse stimulus or insult at critical, sensitive periods of development can induce permanent alterations in normal physiological processes that lead to increased disease risk later in life. For cancer, inheritance of a tumor suppressor gene defect confers a high relative risk for disease development. However, these defects are rarely 100% penetrant. Traditionally, gene-environment interactions are thought to contribute to the penetrance of tumor suppressor gene defects by facilitating or inhibiting the acquisition of additional somatic mutations required for tumorigenesis. The studies presented herein identify developmental programming as a distinctive type of gene-environment interaction that can enhance the penetrance of a tumor suppressor gene defect in adult life. Using rats predisposed to uterine leiomyoma due to a germ-line defect in one allele of the tuberous sclerosis complex 2 (Tsc-2) tumor suppressor gene, these studies show that early-life exposure to the xenoestrogen, diethylstilbestrol (DES), during development of the uterus increased tumor incidence, multiplicity and size in genetically predisposed animals, but failed to induce tumors in wild-type rats. Uterine leiomyomas are ovarian-hormone dependent tumors that develop from the uterine myometrium. DES exposure was shown to developmentally program the myometrium, causing increased expression of estrogen-responsive genes prior to the onset of tumors. Loss of function of the normal Tsc-2 allele remained the rate-limiting event for tumorigenesis; however, tumors that developed in exposed animals displayed an enhanced proliferative response to ovarian steroid hormones relative to tumors that developed in unexposed animals. Furthermore, the studies presented herein identify developmental periods during which target tissues are maximally susceptible to developmental programming. These data suggest that exposure to environmental factors during critical periods of development can permanently alter normal physiological tissue responses and thus lead to increased disease risk in genetically susceptible individuals. ^

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Primary cutaneous melanoma is a cancer arising from melanocytes in the skin. In recent decades the incidence of this malignancy has increased significantly. Mortality rates are high for patients with tumors measuring over a few millimeters in thickness. Response rates to conventional radiation and chemotherapy are very low in patients with metastatic melanoma. New therapies targeting melanoma’s aberrant cell signaling pathways such as the MAP Kinase pathway are being developed. Mutations of NRAS and BRAF genes are quite common in cutaneous melanoma and lead to constitutive activation of the MAP Kinase pathway. This study tests the hypothesis that NRAS and BRAF mutations increase as a tumor progresses from the noninvasive radial growth phase (RGP) to the invasive vertical growth phase (VGP). Laser capture microdissection was used to obtain separate, pure tumor DNA samples from the RGP and VGP of thirty primary cutaneous melanomas. PCR was used to amplify NRAS exon 2 and BRAF exon 15 tumor DNA. The amplified DNA was sequenced and analyzed for mutations. An overall mutation rate of 74% was obtained for the twenty-three melanomas in which there were complete sequence results. With the exception of one melanoma NRAS and BRAF mutations were mutually exclusive. All seven NRAS exon 2 mutations involved codon 61. Three of these melanomas had mutations in both the RGP and VGP. The remaining four tumors were wild type for NRAS exon 2 in the RGP but mutated in the VGP. Of the fifteen BRAF exon 15 mutated melanomas all but one involved codon 600. Twelve of the fifteen BRAF exon 15 mutations were the T1799A type. Nine of the fifteen BRAF mutated tumors had the same mutation in both the RGP and VGP. Five of fifteen melanomas had wild type RGP DNA and BRAF exon 15 mutated VGP DNA. A single melanoma had BRAF exon 15 mutated DNA in the RGP and wild type DNA in the VGP. Overall, these results suggest a trend toward the acquisition of NRAS and BRAF mutations as cutaneous melanomas change from a noninvasive to an invasive, potentially deadly cancer.^

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C. difficile causes gastrointestinal infections in humans, including severe diarrhea. It is implicated in 20%-30% of cases of antibiotic-associated diarrhea, in 50%-70% of cases of antibiotic-associated colitis, and in >90% of cases of antibiotic-associated pseudomembranous colitis. Exposure to antimicrobial agent, hospitalization and age are some of the risk factors that predispose to CDI. Virtually all hospitalized patients with nosocomially-acquired CDI have a history of treatment with antimicrobials or neoplastic agent within the previous 2 months. The development of CDI usually occurs during treatment with antibiotics or some weeks after completing the course of the antibiotics. ^ After exposure to the organism (often in a hospital), the median incubation period is less than 1 week, with a median time of onset of 2days. The difference in the time between the use of antibiotic and the development of the disease relate to the timing of exogenous acquisition of C. difficile. ^ This paper reviewed the literature for studies on different classes of antibiotics in association with the rates of primary CDI and RCDI from the year 1984 to 2012. The databases searched in this systematic review were: PubMed (National Library of Medicine) and Medline (R) (Ovid). RefWorks was used to store bibliographic data. ^ The search strategy yielded 733 studies, 692 articles from Ovid Medline (R) and 41 articles from PubMed after removing all duplicates. Only 11 studies were included as high quality studies. Out of the 11 studies reviewed, 6 studies described the development of CDI in non-CDI patients taking antibiotics for other purposes and 5 studies identified the risk factors associated with the development of recurrent CDI after exposure to antibiotics. ^ The risk of developing CDI in non-CDI patients receiving beta lactam antibiotics was 2.35%, while fluoroquinolones, clindamycin/macrolides and other antibiotics were associated with 2.64%, 2.54% and 2.35% respectively. Of those who received beta lactam antibiotic, 26.7% developed RCDI, while 36.8% of those who received any fluoroquinolone developed RCDI, 26.5% of those who received either clindamycin or macrolides developed RCDI and 29.1% of those who received other antibiotics developed RCDI. Continued use of non-C. difficile antibiotics especially fluoroquinolones was identified as an important risk factor for primary CDI and recurrent CDI. ^

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p63, a p53 family member, is a transcription factor that has complex roles in cancer. This study focuses on the role of the ∆Np63α isoform in bladder cancer (BC). Epithelial – mesenchymal transition (EMT) is a physiological process that plays an important part in metastasis and drug resistance. At the molecular level, EMT is characterized by the loss of the epithelial marker E-cadherin, and the acquisition of the transcriptional repressors of E-cadherin (ZEB1, ZEB2, TWIST, SNAI1 and SNAI2). Recent publications highlight the role of microRNAs belonging to the miR-200 family and miR-205 in preventing EMT through suppression of ZEB1 and ZEB2. p53, the homologue of p63, is implicated in regulating EMT by modulating the expression of miR-200c; however, the mechanisms underlying miR-205 control remain unclear. Here we show that ∆Np63α regulates the transcription of miR-205 and controls EMT in human BC cells. We observed a strong correlation between the expression of ∆Np63α, miR-205 and E-cadherin in a panel of BC cell lines (n=28) and also in bladder primary tumors from a cohort of patients (n=98). A remarkably inverse correlation is observed between ∆Np63α and ZEB1/2 in cell lines. Stable knockdown (KD) ∆Np63α in UC6, an “epithelial” BC cell line, decreased the expression of miR-205 and induced ZEB1/2 expression, the effects that were reversed by expression of exogenous miR-205. Moreover, overexpressing ∆Np63α in UC3, a “messenchymal” BC cell line, brought about opposite results, an increase in miR-205 expression and a reduction in ZEB1/2 expression. Modulation of ∆Np63α expression resulted in a parallel change in the expression of miR-205 and miR-205 “host” gene (miR-205HG). Nuclear run-on and chromatin immunoprecipitation experiments demonstrated that ∆Np63α regulates the transcription of miR-205 through controlling the recruitment of RNA Polymerase II to the promoter of miR-205HG. Interestingly, high miR-205 expression correlated with poor clinical outcome in BC patients, consistent with our recent publication highlighting the enrichment of ∆Np63 in a lethal subset of muscle invasive BC. In summary, our data present the important roles of ∆Np63α in preventing EMT mediated by miR-205. Our study also identifies miR-205 as a potential molecular marker to predict clinical outcome in BC patients.

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A cloned nontumorigenic prostatic epithelial cell line, NbE-1.4, isolated from Noble (nbl/crx) rat ventral prostate, was used to examine the potential role of activated myc and neu oncogenes in prostate carcinogenesis. Transfection of SV40 promoter/enhancer driven constructs containing either v-myc, truncated c-myc, or neu-T (activated neu) oncogenes was accomplished using calcium phosphate-mediated DNA transfer. Cells were cotransfected, as necessary, with pSV2neo, allowing for selection of positive clones using the antibiotic geneticin (G418). G418 resistant colonies were pooled in some cases or limiting dilution exclusion cloned in others as described. Transfection of NbE-1.4 cells with activated myc oncogenes resulted only in the partial transformation. These cells display an altered morphology and decreased dependence on serum factors in vitro; however, saturation density, soft agar colony formation and growth assay in male athymic nude mice were all negative. Transfection and overexpression of NbE-1.4 cells with an activated neu oncogene alone resulted in tumorigenic conversion. Cell transformation was evident following an examination of the altered cellular morphology, an increased soft agar colony formation, and an acquisition of a tumorigenic potential when injected s.c. into male athymic nude mice. neu-transformed NbE-1.4 cells displayed elevated activity of the neu receptor tyrosine kinase. Furthermore, qualitative changes in tyrosine phosphorylated proteins were found in neu transformed cell clones. These changes were associated with elevated expression of mRNAs for laminin $\beta$1, $\beta$2, and procollagen type IV. The expression of fibronectin and E-cadherin, which are often lost during tumorigenesis, did not correlate with the tumorigenic phenotype. Therefore, it appears that neu oncogene overexpression has been found to be associated with the transformation of rat prostatic epithelial cells, presumably through alterations in gene expression that regulate extracellular matrix. The possible interrelationship and functional significance between neu oncogene expression and the elevated extracellular matrix gene expression is discussed. ^

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Primary motor cortex (M1) is involved in the production of voluntary movement and contains a complete functional representation, or map, of the skeletal musculature. This functional map can be altered by pathological experiences, such as peripheral nerve injury or stroke, by pharmacological manipulation, and by behavioral experience. The process by which experience-dependent alterations of cortical function occur is termed plasticity. In this thesis, plasticity of M1 functional organization as a consequence of behavioral experience was examined in adult primates (squirrel monkeys). Maps of movement representations were derived under anesthesia using intracortical microstimulation, whereby a microelectrode was inserted into the cortex to electrically stimulate corticospinal neurons at low current levels and evoke movements of the forelimb, principally of the hand. Movement representations were examined before and at several times after training on behavioral tasks that emphasized use of the fingers. Two behavioral tasks were utilized that dissociated the repetition of motor activity from the acquisition of motor skills. One task was easy to perform, and as such promoted repetitive motor activity without learning. The other task was more difficult, requiring the acquisition of motor skills for successful performance. Kinematic analysis indicated that monkeys used a consistent set of forelimb movements during pellet extractions. Functional mapping revealed that repetitive motor activity during the easier task did not produce plastic changes in movement representations. Instead, map plasticity, in the form of selective expansions of task-related movement representations, was only produced following skill acquisition on the difficult task. Additional studies revealed that, in general, map plasticity persisted without further training for up to three months, in parallel with the retention of task-related motor skills. Also, extensive additional training on the small well task produced further improvements in performance, and further changes in movement maps. In sum, these experiments support the following three conclusions regarding the role of M1 in motor learning. First, behaviorally-driven plasticity is learning-dependent, not activity-dependent. Second, plastic changes in M1 functional representations represent a neural correlate of acquired motor skills. Third, the persistence of map plasticity suggests that M1 is part of the neural substrate for the memory of motor skills. ^

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Cretaceous lava flows overlie Jurassic to Early Cretaceous oceanic crust in the Nauru Basin of the western equatorial Pacific, but their exact age and origin is controversial. In one model, they are generically related to volcanism forming the Ontong Java Plateau. However, paleomagnetic data from basalts recovered by ocean drilling in the Nauru Basin have been interpreted as recording numerous geomagnetic reversals, suggesting the Nauru Basin basalts are older than the Early Aptian flows on the Ontong Java Plateau, and the correlative volcanism seen in the western equatorial and southwestern Pacific Ocean basin. Here, we examine the magnetic fidelity of the Nauru Basin basalts through rock magnetic and paleomagnetic approaches. We find the magnetic carriers in the lavas are unlike most basaltic units recovered by oceanic drilling in that they are magnetically soft. This quality makes the rocks especially prone to the acquisition of secondary magnetic components induced during drilling. We demonstrate that the reversed polarity intervals are illusory, and instead record subtle changes in magnetic hardness that result in partial and complete overprinting by the magnetic field associated with the drill string (e.g., the core barrel, drill pipe and bit). The recognition of these magnetic overprints, the identification of only normal polarity in the Nauru Basin basalts, and a critical consideration of the available radiometric and biostratigraphic age data lead us to conclude that coeval formation of the Nauru Basin basalts and Ontong Java Plateau in Aptian times remains a viable hypothesis.

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Ocean Drilling Program (ODP) Sites 832 and 833 were drilled in the intra-arc North Aoba Basin of the New Hebrides Island Arc (Vanuatu). High volcanic influxes in the intra-arc basin sediment resulting from erosion of volcanic rocks from nearby islands and from volcanic activity are associated with characteristic magnetic signals. The high magnetic susceptibility in the sediment (varying on average from 0.005 to more than 0.03 SI) is one of the most characteristic physical properties of this sedimentary depositional environment because of the high concentration of magnetites in redeposited ash flows and in coarse-grained turbidites. Susceptibility data correlate well with the high resolution electrical resistivity logs recorded by the formation microscanner (FMS) tool. Unlike the standard geophysical logs, which have low vertical resolution and therefore smooth the record of the sedimentary process, the FMS and whole-core susceptibility data provide a clearer picture of turbiditic sediment deposition. Measurements of Curie temperatures and low-temperature susceptibility behavior indicate that the principal magnetic minerals in ash beds, silt, and volcanic sandstone are Ti-poor titanomagnetite, whereas Ti-rich titanomagnetites are found in the intrusive sills at the bottom of Site 833. Apart from an increase in the concentration of magnetite in the sandstone layer, acquisition of isothermal and anhysteretic remanences does not show significant differences between sandstone and clayey silts. The determination of the anisotropy of magnetic susceptibility (AMS) in more than 400 samples show that clayey siltstone have a magnetic anisotropy up to 15%, whereas the AMS is much reduced in sandstone layers. The magnetic susceptibility fabric is dominated by the foliation plane, which is coplanar to the bedding plane. Reorientations of the samples using characteristic remanent magnetizations indicate that the bedding planes dip about 10° toward the east, in agreement with results from FMS images. Basaltic sills drilled at Site 833 have high magnetic susceptibilities (0.05 to 0.1 SI) and strong remanent magnetizations. Magnetic field anomalies up to 50 µT were measured in the sills by the general purpose inclinometer tool (GPIT). The direction of the in-situ magnetic anomaly vectors, calculated from the GPIT, is oriented toward the southeast with shallow inclinations which suggests that the sill intruded during a reversed polarity period.

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A total of 500.7 m of continuous, vertical, oceanic gabbroic section was recovered during Leg 118. The gabbros obtained exhibited various degrees of alteration and deformation, which gave us a good opportunity to study the magnetic properties of oceanic gabbros. Many of these gabbros, which are mainly Fe-Ti oxide gabbros, have strong and unstable secondary magnetic components that were acquired during drilling. Stable inclinations, which are probably in-situ magnetic directions, show a single polarity, with an average value of 66° (±5°), meaning that the studied 501-m oceanic gabbroic block may be a candidate for the source of the marine magnetic anomaly. This may also imply that the metamorphism of oceanic gabbros causing acquisition of magnetization probably occurred within one geomagnetic polarity chron (about 0.3 to 0.7 m.y.) after these gabbros formed at the ridge, leading us to conclude that oceanic gabbros record the so-called Vine-Matthews-Morley type of initial magnetization at the ridge. The average intensity value of stable magnetic components of individual samples, which may be a minimum estimate for remanent magnetizations, is 1.6 A/m. Assuming this magnetic intensity value and a uniform magnetization within an oceanic gabbroic layer having a thickness of 4.5 km (i.e., whole layer 3), it is possible to explain most of the marine magnetic anomaly. If magnetic properties of the samples obtained from Hole 735B are common to oceanic gabbros, layer 3 may contribute more significantly to seafloor spreading magnetic anomalies than previously thought.

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Miocene to Recent species of planktic foraminifera in the Globorotalia (Globoconella) lineage evolved entirely within the thermocline. All species are most abundant within subtropical-temperate watermasses throughout their history. The near stasis in distribution within the thermocline and the subtropical convergence suggests the major morphological changes in Globorotalia (Globoconella) may have occurred through habitat subdivision rather than by vicariant shifts into new watermasses. At the Rio Grande Rise, in the South Atlantic, modern G. inflata is 0.66-0.84? more positive for delta18O than the most enriched coexisting Globigerinoides sacculifer and probably grows in the mid thermocline deeper than 325 m. All extinct globoconellid species have mean delta18O ratios 0.5-0.8? more positive than Globigerinoides trilobus and G. sacculifer and probably lived within the thermocline as well. Major events in skeletal evolution are poorly correlated with changes in delta18O in this group. These include evolutionary transitions to compressed, smooth-walled tests and acquisition of keels. In addition, morphological reversals from the umbilically-inflated G. conomiozea to biconvex G. pliozea and to unkeeled G. puncticulata occur in the absence of changes in delta18O signature. Instead, the ranges of delta18O between different species almost completely overlap once corrected for temporal changes in delta18O of sea water. Foraminifera morphologies have been widely considered to evolve in response to changes in watermasses or depth habitats. However, the variety of skeletal shapes in the globoconellid lineage apparently are not adaptations to a progressive radiation from the surface mixed layer into deeper waters.

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Ocean Drilling Program (ODP) Hole 735B was drilled to a depth of 1.5 km in a tectonic window of gabbroic lower oceanic crust created at the Southwest Indian Ridge. The gabbros have a very stable natural remanent magnetization (NRM) of reversed polarity with most unblocking temperatures slightly below the Curie temperature of magnetite. The NRM includes a drilling-induced overprint but its intensity decays strongly towards the interior of the drill core. The demagnetization data yield no or only a very small secondary magnetization component acquired during the present Brunhes chron or an earlier normal chron, suggesting cooling through most of the blocking temperature range during chron C5r and a strong resistance against the acquisition of thermoviscous magnetization. A novel furnace has been designed to measure magnetizations and their time dependences at high temperatures (up to 580 deg C) inside a commercial SQUID magnetometer. Magnetic viscosity experiments have been conducted on the gabbros at temperatures up to 550 deg C to determine the time and temperature stability of remanent magnetization. Viscosities are generally small and increase little with temperature below the main blocking temperature, where the increase becomes almost an order of magnitude. Extrapolations to geological times infer viscous acquisitions that would be 5-25% of a thermoremanence in 100 kyr and at temperatures of 200-500 deg C. At ocean bottom temperature the predicted magnetization of one sample acquired in the present Brunhes chron should be 10% of the NRM. However, this is not recognized during NRM demagnetization and partial thermoremanent magnetization (pTRM) acquisitions at 250 deg C are also much smaller than predicted. It thus appears that the NRMs are generally magnetically harder than magnetizations acquired after heating to 570 deg C in the laboratory. Susceptibility changes during heating are small (<5%) indicating a seemingly stable magneto-mineralogy, but conspicuous minima occur after heating to 520 deg C. Also, quasi paleointensity experiments reveal characteristic patterns in the NRM/pTRM ratios and also large increases in pTRM capacity after heating to 570 deg C. Moreover, anhysteretic remanent magnetization acquisition in the low field range (<=10 mT) is strongly enhanced after heating by factors up to three. The alteration of the magneto-mineralogy is interpreted to result from the annealing of defects in magnetite that originate from tectonically induced strain. The oceanic gabbros of Hole 735B are thus ideal source layer material for marine magnetic anomalies, and secondary thermoviscous acquisition, as a possible cause for anomalous skewness, is essentially absent.

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Two highly active mud volcanoes located in 990-1,265 m water depths were mapped on the northern Egyptian continental slope during the BIONIL expedition of R/V Meteor in October 2006. High-resolution swath bathymetry and backscatter imagery were acquired with an autonomous underwater vehicle (AUV)-mounted multibeam echosounder, operating at a frequency of 200 kHz. Data allowed for the construction of ~1 m pixel bathymetry and backscatter maps. The newly produced maps provide details of the seabed morphology and texture, and insights into the formation of the two mud volcanoes. They also contain key indicators on the distribution of seepage and its tectonic control. The acquisition of high-resolution seafloor bathymetry and acoustic imagery maps with an AUV-mounted multibeam echosounder fills the gap in spatial scale between conventional multibeam data collected from a surface vessel and in situ video observations made from a manned submersible or a remotely operating vehicle.

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The interactive effects of nutrient availability and ocean acidification on coral calcification were investigated using post-settlement juvenile corals of Acropora digitifera cultured in nutrient-sufficient or nutrient-depleted seawater for 4 d and then exposed to seawater with different partial pressure of carbon dioxide () conditions (38.8 or 92.5 Pa) for 10 d. After the nutrient pretreatment, corals in the high nutrient condition (HN corals) had a significantly higher abundance of endosymbiotic algae than did those in the low nutrient condition (LN corals). The high abundance of endosymbionts in HN corals was reduced as a result of subsequent seawater acidification, and the chlorophyll a per algal cell increased. The photosynthetic oxygen production rate by endosymbionts was enhanced by the acidified seawater regardless of the nutrient treatment, indicating that the reduction in endosymbiont density in HN corals due to acidification was compensated for by the increase in chlorophyll a per cell. Though the photosynthetic rate increased in the acidified conditions for both LN and HN corals, the calcification rate significantly decreased for LN corals but not for HN corals. The acquisition of nutrients from seawater, rather than the increase in alkalinity caused by photosynthesis, might effectively alleviate the negative response of coral calcification to seawater acidification, suggesting that the response of corals and their endosymbionts to ocean acidification can be influenced by nutrient conditions.

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On the basis of studies of Holocene samples,submarine basaltic glass (SBG) is thought to be an ideal paleointensity recorder because it contains unaltered single domain magnetic inclusions that yield Thellier paleointensity data of exceptional quality. To be useful as a recorder of the long-term geomagnetic field, older SBG must retain these optimal properties. Here, we examine this issue through rock magnetic and transmission electron microscope (TEM) analyses of Cretaceous SBG recovered at Ocean Drilling Program Site 1203 (northwestern Pacific Ocean). These SBG samples have very low natural remanent magnetization intensities (NRM <50 nAm**2/g) and TEM analyses indicate a correspondingly low concentration of crystalline inclusions. Thellier experiments on samples with the strongest NRM intensity (>5*10**-11 Am**2) show a rapid acquisition of thermoremanent magnetization (TRM) with respect to NRM demagnetization. Taken at face value,this behavior implies magnetization in a very weak (617 WT) ambient field. But monitoring of magnetic hysteresis properties during the Thellier experiments (on subsamples of the SBG samples used for paleointensity determinations) indicates systematic variations in values over the same temperature range where the rapid TRM acquisition is observed. A similar change in properties during heating is observed on monitor SBG specimens using low-temperature data: with progressive heatings the Verwey transition becomes more distinct. We suggest that these experimental data record the partial melting and neocrystallization of magnetic grains in SBG during the thermal treatments required by the Thellier method,resulting in paleointensity values biased to low values. We further propose that this process is pronounced in Cretaceous and Jurassic SBG (relative to Holocene SBG) because devitrification on geologic time scales (i.e., tens of millions of years) lowers the transition temperature at which the neocrystallization can commence. Magnetic hysteresis monitoring may provide a straightforward means of detecting the formation of new magnetic inclusions in SBG during Thellier experiments.