Optimization of random amplified polymorphic DNA techniques for use in genetic studies of Cuban triatominae

Random amplified polymorphic DNA (RAPD) technique is a simple and reliable method to detect DNA polymorphism. Several factors can affect the amplification profiles, thereby causing false bands and non-reproducibility of assay. In this study, we analyzed the effect of changing the concentration of primer, magnesium chloride, template DNA and Taq DNA polymerase with the objective of determining their optimum concentration for the standardization of RAPD technique for genetic studies of Cuban Triatominae. Reproducible amplification patterns were obtained using 5 pmoL of primer, 2.5 mM of MgCl2, 25 ng of template DNA and 2 U of Taq DNA polymerase in 25 µL of the reaction. A panel of five random primers was used to evaluate the genetic variability of T. flavida. Three of these (OPA-1, OPA-2 and OPA-4) generated reproducible and distinguishable fingerprinting patterns of Triatominae. Numerical analysis of 52 RAPD amplified bands generated for all five primers was carried out with unweighted pair group method analysis (UPGMA). Jaccard's Similarity Coefficient data were used to construct a dendrogram. Two groups could be distinguished by RAPD data and these groups coincided with geographic origin, i.e. the populations captured in areas from east and west of Guanahacabibes, Pinar del Río. T. flavida present low interpopulation variability that could result in greater susceptibility to pesticides in control programs. The RAPD protocol and the selected primers are useful for molecular characterization of Cuban Triatominae.

Chaotic Phenomena and Performance Optimization in the Trajectory Control of Redundant Manipulators

Redundant manipulators have some advantages when compared with classical arms because they allow the trajectory optimization, both on the free space and on the presence of abstacles, and the resolution of singularities. For this type of manipulators, several kinetic algorithms adopt generalized inverse matrices. In this line of thought, the generalized inverse control scheme is tested through several experiments that reveal the difficulties that often arise. Motivated by theseproblems this paper presents a new method that ptimizes the manipulability through a least squre polynomialapproximation to determine the joints positions. Moreover, the article studies influence on the dynamics, when controlling redundant and hyper-redundant manipulators. The experiment confirm the superior performance of the proposed algorithm for redundant and hyper-redundant manipulators, revealing several fundamental properties of the chaotic phenomena, and gives a deeper insight towards the future development of superior trajectory control algorithms.

Teaching accounting and management through business simulation

Everyday accounting and management teachers face the challenge of creating learning environments that motivate students. This chapter describes the Business Simulation (BS) experience that has taken place at the Polytechnic Institute of Porto, Institute of Accounting and Administration (IPP/ISCAP). The chapter presents students’ perceptions about the course and the teaching/learning approach. The results show that pedagogical methods used (competency-oriented), generic competencies (cooperation and group work), and interpersonal skills (organisational and communication skills) are relevant for future accounting professionals. In addition, positive remarks and possible constraints based on observation, staff meetings, and past research are reported. The chapter concludes with some recommendations from the project implementation

Simulation Environment for Multi-Robot Cooperative 3D Target Perception

4th International Conference, SIMPAR 2014, Bergamo, Italy, October 20-23, 2014

Impacto das medidas de conservação de energia em projeto na redução da intensidade de utilização de matérias-primas na construção de um edifício

O presente trabalho pretende mostrar que a aplicação de medidas de conservação de energia (MCE) pode representar uma redução da intensidade de utilização de matérias-primas na construção de um edifício. Mais concretamente, pode representar uma redução da utilização de materiais e equipamentos, e como consequência, uma redução no esforço económico ao primeiro investimento. Podendo posteriormente representar uma redução na utilização de energia durante o período de funcionamento do edifício. A aplicação de MCE no sector da construção tem vindo a ser uma prática corrente nos novos edifícios e edifícios sujeitos a grandes intervenções de reabilitação. Esta prática deve-se à obrigatoriedade de cumprimento de requisitos regulamentares aplicados à otimização do desempenho energético dos edifícios e dos seus sistemas técnicos, nomeadamente, o RCCTE e o RSECE, entretanto revogados pelo REH e pelo RECS, respetivamente. A implementação de MCE apresenta, na maioria dos casos, benefícios económicos para o promotor do edifício, uma vez que se traduz muitas vezes, na otimização do dimensionamento dos sistemas de Aquecimento, Ventilação e Ar Condicionado (AVAC). Esta otimização permite reduzir os custos associados ao primeiro investimento, bem como na utilização de energia por parte do utilizador, logo na redução dos custos de exploração. No entanto, a falta de quantificação dos impactos do dimensionamento dos sistemas AVAC, da redução de utilização de energia e da análise do custo-benefício da sua aplicação pode condicionar o interesse na sua implementação. Neste contexto, surge a presente dissertação, por iniciativa do Instituto Soldadura e Qualidade (ISQ), aplicado a um caso prático de um edifício já construído e propriedade daquela empresa. Com este trabalho pretende-se avaliar o contributo efetivo das MCE implementadas na fase de projeto e na fase de construção, quer na otimização da dimensão de sistemas e equipamentos AVAC, por via da redução das necessidades energéticas, quer na redução de utilização de energia, permitindo, de seguida, uma avaliação custo-benefício.Na base do caso de estudo está o ECOTERMOLAB, o edifício acima referido, adquirido pelo ISQ para instalação de um laboratório de formação, investigação e desenvolvimento na área da energia. Após aquisição pelo ISQ, o edifício sofreu várias alterações/beneficiações, entre as quais a implementação de MCE, tais como, a aplicação de isolamento térmico na envolvente opaca (paredes, pavimentos e coberturas), duplicação dos vãos envidraçados simples, conferindo-lhes melhores caraterísticas térmicas, e pela aplicação de proteções solar. Foram ainda adotadas MCE aos sistemas AVAC, designadamente, pela adoção de recuperadores de calor nas Unidades de Tratamento de Ar Novo (UTAN’s) e de variadores de velocidade nas bombas de circulação de água e nos ventiladores de ar das UTAN’s. Pretendia o ISQ concluir se a aplicação de todas as MCE contribuiu de forma efetiva para o dimensionamento de sistemas e equipamentos AVAC de menor capacidade e, consequentemente, numa redução de utilização de energia. Em sequência, pretendia avaliar a viabilidade económica da aplicação de todas as MCE, estimando o sobrecusto inicial e o tempo necessário para o retorno financeiro daquele investimento. Para alcançar os objetivos propostos, procedeu-se à simulação energética dinâmica do ECOTERMOLAB, utilizando o programa EnergyPlus. Primeiro foi simulada uma situação base do edifício, sem quaisquer MCE. Posteriormente foi caraterizada cada uma das situações de aplicação das MCE, com o objetivo de avaliar o respetivo impacto individual na utilização de energia pelos sistemas AVAC. Por último foram assumidas todas as soluções em conjunto para avaliar o impacto final de todas as MCE na utilização de energia dos sistemas AVAC, bem como no seu dimensionamento. Das simulações dinâmicas foram obtidos os valores das necessidades de aquecimento e arrefecimento, de energia utilizada pelos sistemas AVAC e de caudais de água aquecida e arrefecida circulada. Com estes valores foi feita uma estimativa de dimensionamento dos equipamentos e componentes AVAC para as situações da aplicação de todas as MCE no ECOTERMOLAB e a sua ausência. A partir da diferença dos custos de aquisição dos respetivos equipamentos e dos valores de poupança em energia foi realizado o estudo da viabilidade económica da implementação das MCE neste edifício. Este estudo permitiu concluir que a aplicação das MCE no ECOTERMOLAB levou à redução da dimensão na generalidade dos equipamentos e componentes AVAC. Permitiu, ainda, concluir que houve uma diminuição de utilização de energia por parte destes sistemas e equipamentos para o aquecimento e arrefecimento. Conclui-se ainda que o período de retorno (Payback) do sobrecusto inicial, estimado em 37.822€ é de, aproximadamente, onze anos e meio, para um valor atual líquido (VAL) de 8.061€ e à taxa interna de rentabilidade (TIR) de 7,03%.

Optimization of the Sybr Green real time PCR for the detection of Human Herpes Virus type 6 (HHV-6)

HHV-6 is the etiological agent of Exanthem subitum which is considered the sixth most frequent disease in infancy. In immuno-compromised hosts, reactivation of latent HHV-6 infection may cause severe acute disease. We developed a Sybr Green Real Time PCR for HHV-6 and compared the results with nested conventional PCR. A 214 pb PCR derived fragment was cloned using pGEM-T easy from Promega system. Subsequently, serial dilutions were made in a pool of negative leucocytes from 10-6 ng/µL (equivalent to 2465.8 molecules/µL) to 10-9 (equivalent to 2.46 molecules/µL). Dilutions of the plasmid were amplified by Sybr Green Real Time PCR, using primers HHV3 (5' TTG TGC GGG TCC GTT CCC ATC ATA 3)'and HHV4 (5' TCG GGA TAG AAA AAC CTA ATC CCT 3') and by conventional nested PCR using primers HHV1 (outer): 5'CAA TGC TTT TCT AGC CGC CTC TTC 3'; HHV2 (outer): 5' ACA TCT ATA ATT TTA GAC GAT CCC 3'; HHV3 (inner) and HHV4 (inner) 3'. The detection threshold was determined by plasmid serial dilutions. Threshold for Sybr Green real time PCR was 24.6 molecules/µL and for the nested PCR was 2.46 molecules/µL. We chose the Real Time PCR for diagnosing and quantifying HHV-6 DNA from samples using the new Sybr Green chemistry due to its sensitivity and lower risk of contamination.

A multi-objective optimization of the active and reactive resource scheduling at a distribution level in a smart grid context

In the traditional paradigm, the large power plants supply the reactive power required at a transmission level and the capacitors and transformer tap changer were also used at a distribution level. However, in a near future will be necessary to schedule both active and reactive power at a distribution level, due to the high number of resources connected in distribution levels. This paper proposes a new multi-objective methodology to deal with the optimal resource scheduling considering the distributed generation, electric vehicles and capacitor banks for the joint active and reactive power scheduling. The proposed methodology considers the minimization of the cost (economic perspective) of all distributed resources, and the minimization of the voltage magnitude difference (technical perspective) in all buses. The Pareto front is determined and a fuzzy-based mechanism is applied to present the best compromise solution. The proposed methodology has been tested in the 33-bus distribution network. The case study shows the results of three different scenarios for the economic, technical, and multi-objective perspectives, and the results demonstrated the importance of incorporating the reactive scheduling in the distribution network using the multi-objective perspective to obtain the best compromise solution for the economic and technical perspectives.

Multi-agent simulation of competitive electricity markets: Autonomous systems cooperation for European market modeling

The electricity market restructuring, and its worldwide evolution into regional and even continental scales, along with the increasing necessity for an adequate integration of renewable energy sources, is resulting in a rising complexity in power systems operation. Several power system simulators have been developed in recent years with the purpose of helping operators, regulators, and involved players to understand and deal with this complex and constantly changing environment. The main contribution of this paper is given by the integration of several electricity market and power system models, respecting to the reality of different countries. This integration is done through the development of an upper ontology which integrates the essential concepts necessary to interpret all the available information. The continuous development of Multi-Agent System for Competitive Electricity Markets platform provides the means for the exemplification of the usefulness of this ontology. A case study using the proposed multi-agent platform is presented, considering a scenario based on real data that simulates the European Electricity Market environment, and comparing its performance using different market mechanisms. The main goal is to demonstrate the advantages that the integration of various market models and simulation platforms have for the study of the electricity markets’ evolution.

A multi-objective model for scheduling of short-term incentive-based demand response programs offered by electricity retailers

In this paper, we formulate the electricity retailers’ short-term decision-making problem in a liberalized retail market as a multi-objective optimization model. Retailers with light physical assets, such as generation and storage units in the distribution network, are considered. Following advances in smart grid technologies, electricity retailers are becoming able to employ incentive-based demand response (DR) programs in addition to their physical assets to effectively manage the risks of market price and load variations. In this model, the DR scheduling is performed simultaneously with the dispatch of generation and storage units. The ultimate goal is to find the optimal values of the hourly financial incentives offered to the end-users. The proposed model considers the capacity obligations imposed on retailers by the grid operator. The profit seeking retailer also has the objective to minimize the peak demand to avoid the high capacity charges in form of grid tariffs or penalties. The non-dominated sorting genetic algorithm II (NSGA-II) is used to solve the multi-objective problem. It is a fast and elitist multi-objective evolutionary algorithm. A case study is solved to illustrate the efficient performance of the proposed methodology. Simulation results show the effectiveness of the model for designing the incentive-based DR programs and indicate the efficiency of NSGA-II in solving the retailers’ multi-objective problem.

Municipal solid waste management system: decision support through systems analysis

Thesis submitted to the Universidade Nova de Lisboa, Faculdade de Ciências e Tecnologia for the degree of Doctor of Philosophy in Environmental Engineering

Optimization of the Tartrate-Resistant Acid Phosphatase Detection by Histochemical Method

According to the new KDIGO (Kidney Disease Improving Global Outcomes) guidelines, the term of renal osteodystrophy, should be used exclusively in reference to the invasive diagnosis of bone abnormalities. Due to the low sensitivity and specificity of biochemical serum markers of bone remodelling,the performance of bone biopsies is highly stimulated in dialysis patients and after kidney transplantation. The tartrate-resistant acid phosphatase (TRACP) is an iso-enzyme of the group of acid phosphatases, which is highly expressed by activated osteoclasts and macrophages. TRACP in osteoclasts is in intracytoplasmic vesicles that transport the products of bone matrix degradation. Being present in activated osteoclasts, the identification of this enzyme by histochemistry in undecalcified bone biopsies is an excellent method to quantify the resorption of bone. Since it is an enzymatic histochemical method for a thermolabile enzyme, the temperature at which it is performed is particularly relevant. This study aimed to determine the optimal temperature for identification of TRACP in activated osteoclasts in undecalcified bone biopsies embedded in methylmethacrylate. We selected 10 cases of undecalcified bone biopsies from hemodialysis patients with the diagnosis of secondary hyperparathyroidism. Sections of 5 μm were stained to identify TRACP at different incubation temperatures (37º, 45º, 60º, 70º and 80ºC) for 30 minutes. Activated osteoclasts stained red and trabecular bone (mineralized bone) was contrasted with toluidine blue. This approach also increased the visibility of the trabecular bone resorption areas (Howship lacunae). Unlike what is suggested in the literature and in several international protocols, we found that the best results were obtained with temperatures between 60ºC and 70ºC. For technical reasons and according to the results of the present study, we recommended that, for an incubation time of 30 minutes, the reaction should be carried out at 60ºC. As active osteoclasts are usually scarce in a bone section, the standardization of the histochemistry method is of great relevance, to optimize the identification of these cells and increase the accuracy of the histomosphometric results. Our results, allowing an increase in osteoclasts contrast, also support the use of semi-automatic histomorphometric measurements.

Simulation of masonry out-of-plane failure modes by multi-body dynamics

The seismic assessment of the local failure modes in existing masonry buildings is currently based on the identification of the so-called local mechanisms, often associated with the out-of-plane wall behavior, whose stability is evaluated by static force-based approaches and, more recently, by some displacement-based proposals. Local mechanisms consist of kinematic chains of masonry portions, often regarded as rigid bodies, with geometric nonlinearity and concentrated nonlinearity in predefined contact regions (unilateral no-tension behavior, possible sliding with friction). In this work, the dynamic behavior of local mechanisms is simulated through multi-body dynamics, to obtain the nonlinear response with efficient time history analyses that directly take into account the characteristics of the ground motion. The amplification/filtering effects of the structure are considered within the input motion. The proposed approach is validated with experimental results of two full-scale shaking-table tests on stone masonry buildings: a sacco-stone masonry façade tested at Laboratório Nacional de Engenharia Civil and a two-storey double-leaf masonry building tested at European Centre for Training and Research in Earthquake Engineering (EUCENTRE).

Visualization and interaction in a simulation system for flood emergencies

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para obtenção do grau de Mestre em Engenharia Informática

Stochastic simulation of the morphology of fluvial sand channels reservoirs

Dissertação para obtenção do Grau de Mestre em Engenharia Geológica (Georrecursos)