Viral metagenomic analysis of feces of wild small carnivores

Background: Recent studies have clearly demonstrated the enormous virus diversity that exists among wild animals. This exemplifies the required expansion of our knowledge of the virus diversity present in wildlife, as well as the potential transmission of these viruses to domestic animals or humans. Methods: In the present study we evaluated the viral diversity of fecal samples (n = 42) collected from 10 different species of wild small carnivores inhabiting the northern part of Spain using random PCR in combination with next-generation sequencing. Samples were collected from American mink (Neovison vison), European mink (Mustela lutreola), European polecat (Mustela putorius), European pine marten (Martes martes), stone marten (Martes foina), Eurasian otter (Lutra lutra) and Eurasian badger (Meles meles) of the family of Mustelidae; common genet (Genetta genetta) of the family of Viverridae; red fox (Vulpes vulpes) of the family of Canidae and European wild cat (Felis silvestris) of the family of Felidae. Results: A number of sequences of possible novel viruses or virus variants were detected, including a theilovirus, phleboviruses, an amdovirus, a kobuvirus and picobirnaviruses. Conclusions: Using random PCR in combination with next generation sequencing, sequences of various novel viruses or virus variants were detected in fecal samples collected from Spanish carnivores. Detected novel viruses highlight the viral diversity that is present in fecal material of wild carnivores.

Biology and Management of the American Shad and Status of the Fisheries, Atlantic Coast of the United States, 1960

This paper summarizes current information on the American shad, Alosa sapidissima, and describes the species and its fishery. Emphasis is placed on (1) life history of the fish, (2) condition of the fishery by State and water areas in 1960 compared to 1896 when the last comprehensive description was made, (3) factors responsible for decline in abundance, and (4) management measures. The shad fishery has changed little over the past three-quarters of a century, except in magnitude of yield. Types of shad-fishing gear have remained relatively unchanged, but many improvements have been made in fishing techniques, mostly to achieve economy. In 1896 the estimated catch was more than 50 million pounds. New Jersey ranked first in production with about 14 million pounds, and Virginia second with 11 million pounds. In 1960 the estimated catch was slightly more than 8 million pounds. Maryland ranked first in production with slightly more than 1.5 million pounds, Virginia second with slightly less than 1.4 million pounds, and North Carolina third with about 1.3 million pounds. Biological and economic factors blamed for the decline in shad abundance, such as physical changes in the environment, construction of dams, pollution, over-fishing, and natural cycles of abundance, are discussed. Also discussed are methods used for the rehabilitation and management of the fishery, such as artificial propagation, installation of fish-passage facilities at impoundments, and fishing regulations. With our present knowledge, we can manage individual shad populations; but, we probably cannot restore the shad to its former peak of abundance.

The Ribble. Portrait of an estuary

Blackpool, Lytham St. Anne's and Southport are household names as popular leisure and holiday resorts the length and breadth of the land. Their location at the mouth of the estuary of the River Ribble is much less well known, yet this same estuary is of paramount importance to both the economy and the environment of North West England. Indeed, the Ribble Estuary is of international importance for interests as diverse as wintering and migrating wild birds on one hand to the modern aerospace industry on the other. This brochure provides a brief introduction to the estuary of the River Ribble including a historic overview of the people living near the estuary, agriculture and wildlife.

Vegetação e arquitetura das espécies de restinga associadas à ocorrência de Formicivora littoralis (Aves,Thamnophilidae)

O presente estudo teve como objetivo central conhecer a composição florística, a estrutura e a arquitetura das espécies da formação arbustiva fechada pós-praia e investigar possíveis associações com Formicivora littoralis, considerando tática de forrageamento, construção de ninhos e abundância da ave. F. littoralis é endêmica de restingas, e está ameaçada de extinção devido a perda acelerada de habitat. Entretanto, pouco se sabe sobre a vegetação em que ela ocorre, principalmente sobre as áreas de maior abundância da ave localizadas na formação Arbustiva Fechada Pós-praia (AFP) da Restinga da Massambaba, as quais estão inseridas em um Centro de Diversidade Vegetal (CDV) na Região de Cabo Frio. Diante disto, este estudo foi realizado em dois trechos desta formação na Restinga da Massambaba, nos municípios de Araruama e Arraial do Cabo, RJ, Brasil. Foram efetuadas 60 excursões a campo, com coletas aleatórias realizadas ao longo de toda a formação, geração de 20 parcelas de 2x50 m (0,2ha) perpendiculares ao mar, incluindo na amostragem indivíduos com DAP e DAS ≥2,5, estes, foram ainda categorizados em modelos de arquitetura de ramificação considerando número de ramos em dois patamares de altura (DAP e DAS). O levantamento florístico resultou em 327 coletas de 160 espécies, sendo pelo menos 12 espécies vegetais sob algum estado de ameaça, inclusive redescoberta uma Salicaceae (Casearia sessiliflora). Orchidaceae, Leguminosae e Myrtaceae foram as famílias mais ricas. Foram acrescentados 75% mais espécies na lista preliminar da AFP na Massambaba, além de 14 novos registros para o CDV de Cabo Frio. Na estrutura e arquitetura foram analisados 906 indivíduos de 58 espécies. Sendo os maiores valores de importância de Pilosocereus arrabidae (42,30) e Chrysophyllum lucentifolium (23,45). A diversidade de Shannon foi de 3,46 e equabilidade de 0,85. A arquitetura da maior parte dos indivíduos foi complexa, 58% de indivíduos com múltiplas ramificações, e as espécies apresentando variados padrões de ramificação. A densidade populacional de F. littoralis na AFP foi elevada, sendo estimada em 172 ind/km2. A arquitetura da AFP tem influência na ecologia da ave, pois ela foi generalista quanto à espécie utilizada como suporte na construção de ninhos e também para as táticas de forrageamento, mas houve seleção de ramos finos que formavam na horizontal ângulos de até 90 de abertura para construir ninhos. Ramos finos e mais horizontais também foram utilizados com frequência para as táticas de forrageamento. A abundância de F. littoralis esteve correlacionada positivamente à diversidade vegetal e negativamente à altura da vegetação, características marcantes nesta formação. Além disso, elevada taxa de vegetais com síndrome de dispersão zoocórica indica a importância desta formação na oferta de recursos alimentícios para a fauna e atração de pequenos artrópodes, os quais fazem parte da dieta de F. littoralis.

Revealing the appetite of the marine aquarium fish trade: the volume and biodiversity of fish imported into the United States

The aquarium trade and other wildlife consumers are at a crossroads forced by threats from global climate change and other anthropogenic stressors that have weakened coastal ecosystems. While the wildlife trade may put additional stress on coral reefs, it brings income into impoverished parts of the world and may stimulate interest in marine conservation. To better understand the influence of the trade, we must first be able to quantify coral reef fauna moving through it. Herein, we discuss the lack of a data system for monitoring the wildlife aquarium trade and analyze problems that arise when trying to monitor the trade using a system not specifically designed for this purpose. To do this, we examined an entire year of import records of marine tropical fish entering the United States in detail, and discuss the relationship between trade volume, biodiversity and introduction of non-native marine fishes. Our analyses showed that biodiversity levels are higher than previous estimates. Additionally, more than half of government importation forms have numerical or other reporting discrepancies resulting in the overestimation of trade volumes by 27%. While some commonly imported species have been introduced into the coastal waters of the USA (as expected), we also found that some uncommon species in the trade have also been introduced. This is the first study of aquarium trade imports to compare commercial invoices to government forms and provides a means to, routinely and in real time, examine the biodiversity of the trade in coral reef wildlife species.

Spatial and seasonal abundance of sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) off the coast of Texas, determined with twenty years of data (1987–200

Sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) are both found within the immediate offshore areas of the Gulf of Mexico, especially around Texas; however information is limited on how much distributional overlap really occurs between these species. In order to investigate spatial and seasonal differences between species, we analyzed twenty years of bay and offshore trawl data collected by biologists of the Coastal Fisheries Division, Texas Parks and Wildlife Department. Sand seatrout and silver seatrout were distributed differently among offshore sampling areas, and salinity and water depth appeared to correlate with their distribution. Additionally, within the northernmost sampling area of the gulf waters, water depth correlated significantly with the presence of silver seatrout, which were found at deeper depths than sand seatrout. There was also an overall significant decrease in silver seatrout abundance during the summer season, when temperatures were at their highest, and this decrease may have indicated a migration farther offshore. Sand seatrout abundance had an inverse relationship with salinity and water depth offshore. In addition, sand seatrout abundance was highest in bays with direct passes to the gulf and correlated with corresponding abundance in offshore areas. These data highlight the seasonal and spatial differences in abundance between sand and silver seatrout and relate these differences to the hydrological and geological features found along the Texas coastline.

Novel Papillomaviruses in Free-Ranging Iberian Bats: No Virus-Host Co-evolution, No Strict Host Specificity, and Hints for Recombination

Papillomaviruses (PVs) are widespread pathogens. However, the extent of PV infections in bats remains largely unknown. This work represents the first comprehensive study of PVs in Iberian bats. We identified four novel PVs in the mucosa of free-ranging Eptesicus serotinus (EserPV1, EserPV2, and EserPV3) and Rhinolophus ferrumequinum (RferPV1) individuals and analyzed their phylogenetic relationships within the viral family. We further assessed their prevalence in different populations of E. serotinus and its close relative E. isabellinus. Although it is frequent to read that PVs co-evolve with their host, that PVs are highly species-specific, and that PVs do not usually recombine, our results suggest otherwise. First, strict virus-host co-evolution is rejected by the existence of five, distantly related bat PV lineages and by the lack of congruence between bats and bat PVs phylogenies. Second, the ability of EserPV2 and EserPV3 to infect two different bat species (E. serotinus and E. isabellinus) argues against strict host specificity. Finally, the description of a second noncoding region in the RferPV1 genome reinforces the view of an increased susceptibility to recombination in the E2-L2 genomic region. These findings prompt the question of whether the prevailing paradigms regarding PVs evolution should be reconsidered.

The ecology of Atlantic white cedar wetlands: a community profile

This monograph on the ecology of Atlantic white cedar wetlands is one of a series of U.S. Fish and Wildlife Service profiles of important freshwater wetland ecosystems of the United States. The purpose of the profile is to describe the extent, components, functioning, history, and treatment of these wetlands. It is intended to provide a useful reference to relevant scientific information and a synthesis of the available literature. The world range of Atlantic white cedar (Chamaecyparis thyoides) is limited to a ribbon of freshwater wetlands within 200 km of the Atlantic and Gulf coasts of the United States, extending from mid-Maine to mid-Florida and Mississippi. Often in inaccessible sites and difficult to traverse, cedar wetlands contain distinctive suites of plant species. Highly valued as commercial timber since the early days of European colonization of the continent, the cedar and its habitat are rapidly disappearing. This profile describes the Atlantic white cedar and the bogs and swamps it dominates or codominates throughout its range, discussing interrelationships with other habitats, putative origins and migration patterns, substrate biogeochemistry, associated plant and animal species (with attention to those that are rare, endangered, or threatened regionally or nationally), and impacts of both natural and anthropogenic disturbance. Research needs for each area are outlined. Chapters are devoted to the practices and problems of harvest and management, and to an examination of a large preserve recently acquired by the USFWS, the Alligator River National Wildlife Refuge in North Carolina.

Interações próximas com o boto-da-Amazônia (Inia geoffrensis)

O turismo vem sendo considerado como solução de problemas econômicos em muitas comunidades de baixa renda, mas também pode ser causador de impactos negativos. O condicionamento de animais selvagens através da alimentação artificial facilita o trabalho dos operadores de turismo de natureza ao criar mais situações de encontro e diminuir as distâncias entre os turistas e esses animais, mas casos ao redor do mundo demonstram numerosos impactos negativos resultantes de tais atividades. No estado do Amazonas, Brasil, cinco casos de atividade turística onde botos-da-Amazônia (Inia geoffrensis) foram condicionados ao contato humano através da alimentação articial vêm ocorrendo, sendo o caso do Parque Nacional de Anavilhanas (PNA), em Novo Airão (NA), o precursor. Assim, os objetivos da presente tese são: descrever os casos de condicionamento de botos como atração turística no estado do Amazonas, avaliar se as atividades turísticas de alimentação artificial influenciam a agressividade e o comportamento social dos botos condicionados do PNA, produzir uma avaliação acurada da percepção da comunidade local de NA com relação aos possíveis impactos socioeconômicos desta atividade turística, acessar a percepção dos pescadores locais quanto às interações entre cetáceos (incluindo o tucuxi, Sotalia fluviatilis) e atividades de pesca e os impactos do condicionamento de botos nessas interações, na região de NA e conduzir uma análise das expectativas prévias e experiências realizadas pelos turistas participantes das atividades de interação com os botos em NA, avaliando também sua percepção geral sobre este tipo de turismo, em especial com relação à sua proximidade com os animais. Os métodos utilizados para a coleta dos dados foram: entrevistas etnográficas semi-estruturadas, observação participante, questionários auto-aplicáveis e métodos de amostragem comportamental. Os resultados demonstraram que as atividades baseadas no condicionamento geram vários impactos negativos. Pode-se concluir que a atividade turística baseada no condicionamento de botos através da alimentação artificial: tem se dispersado pelo estado do Amazonas ao longo dos últimos anos, altera o comportamento social e causa o aumento da competição entre os botos condicionados em NA, apesar de gerar empatia pelo boto em parte da população de Novo Airão, é percebida pelos moradores como gerando poucos benefícios econômicos, sendo que a maioria se sente excluída do compartilhamento de benefícios gerados pela mesma, aparentemente não resulta em uma grande mudança na percepção negativa dos botos por parte dos pescadores, que também se percebem como estando excluídos do compartilhamento de benefícios gerados pela atividade e geram um alto grau de satisfação nos turistas participantes e atendem às atuais expectativas dos turistas, mas através de atividades invasivas que provavelmente disseminam a ideia de que condicionar animais silvestres ao contato humano através da alimentação artificial é correto. Assim, possivelmente a atividade em questão não está em completo acordo com as leis brasileiras, conceitos de ecoturismo e funções das unidades de conservação. Propostas de manejo para superar a controversa questão relacionada à alimentação artificial como prática turística e fortalecimento de práticas menos negativamente impactantes de caráter participativo para NA são sugeridas.

PGPRs and nitrogen-fixing legumes: a perfect team for efficient Cd phytoremediation?

Cadmium (Cd) is a toxic, biologically non-essential and highly mobile metal that has become an increasingly important environmental hazard to both wildlife and humans. In contrast to conventional remediation technologies, phytoremediation based on legume rhizobia symbiosis has emerged as an inexpensive decontamination alternative which also revitalize contaminated soils due to the role of legumes in nitrogen cycling. In recent years, there is a growing interest in understanding symbiotic legume rhizobia relationship and its interactions with Cd. The aim of the present review is to provide a comprehensive picture of the main effects of Cd in N-2-fixing leguminous plants and the benefits of exploiting this symbiosis together with plant growth promoting rhizobacteria to boost an efficient reclamation of Cd-contaminated soils.

Hábitos posturais domiciliares e dor lombar e cervical entre adolescentes de uma escola pública de ensino médio do Rio de Janeiro

A prevalência de dor lombar e cervical na adolescência é tão elevada quanto nos adultos e seu início, na adolescência, aumenta o risco de desenvolver dor crônica na vida adulta. Existem poucos estudos que tenham investigado como são os hábitos posturais dos adolescentes durante o tempo que estão em atividades passivas em casa e se esses hábitos estão associados à dor lombar e à dor cervical. Objetivo: Investigar a prevalência de dor lombar (DL) e de dor cervical (DC) em adolescentes e suas associações com hábitos posturais domiciliares enquanto estão assistindo a TV e/ou usando o computador. Métodos: Estudo transversal com adolescentes de uma escola pública de ensino médio do Rio de Janeiro. Os estudantes responderam questões relativas a variáveis sociodemográficas, ao estilo de vida, aos hábitos posturais (ilustrações), ao tempo assistindo a TV, ao tempo usando o computador, ao tempo usando o videogame e sobre a presença da DL e da DC. Foi utilizada regressão logística multivariada para analisar a associação entre hábitos posturais domiciliares e dor lombar e cervical. Resultados: Foram 1102 participantes. A prevalência de DL foi de 46,8% (18,2% dor lombar crônica [DLC] e 28,6% dor lombar aguda [DLA]. A prevalência de dor cervical aguda (DCA) foi de 32,9%. Posturas slump (excessivamente relaxadas) ao assistir a TV e ao usar o computador de mesa estiveram associadas com DLC (RC [razão de chances] 3,22, IC 95% 1,38 7,5 e RC 1,7, IC 95% 1,06 2,73). Participantes que assistiam a TV sentados na cama tiveram uma RC de 2,14 (IC 95% 1,06 4,32) para DLA e os que usavam o notebook em decúbito ventral na cama tiveram uma RC de 2,26 (IC 95% 1,02 5,01) para DLA. Os participantes que assistiam a TV em decúbito dorsal por 2 horas ou mais tiveram uma RC de 6,21 (IC 95% 1,45 26,52) para DCA. Aqueles que disseram que mudavam de postura com frequência, ao usar o computador de mesa por 2 horas ou mais, tiveram uma RC de 0,34 (IC 95% 0,14 0,85) para DCA. Conclusão: Os nossos achados apoiam a elevada prevalência de DL e de DC na adolescência e adicionam a associação com os hábitos posturais domiciliares.

Bay Scallops, Argopecten irradians, in the Northwestern Gulf of Mexico (Alabama, Mississippi, Louisiana, and Texas)

There is no evidence that a commercial bay scallop fishery exists anywhere in the northwestern Gulf of Mexico. No data concerning scallop abundance or distribution was found for Alabama, Mississippi, and Louisiana. Texas is the only state west of Florida where bay scallop populations have been documented. These records come from a variety of literature sources and the fisheries-independent data collected by Texas Parks and Wildlife Department (1982–2005). Although common in the diet of prehistoric peoples living on the Texas coast, recent (last ~50 years) bay scallop population densities tend to be low and exhibit “boom–bust” cycles of about 10–15 years. The Laguna Madre, is the only place on the Texas coast where scallops are relatively abundant; this is likely due to extensive seagrasses cover (>70%) and salinities that typically exceed 35 psu. The lack of bay scallop fishery development in the northwestern Gulf of Mexico is probably due to variable but generally low densities of the species combined with a limited amount of suitable (i.e. seagrass

The Federal Fisheries Service, 1871–1940: Its Origins, Organization, and Accomplishments

The U.S. Fish Commission was initiated in 1871 with Spencer Fullerton Baird as the first U.S. Fish Commissioner as an independent entity. In 1903 it became a part of the new U.S. Department of Commerce and Labor and was renamed the Bureau of Fisheries, a name it retained when the Departments of Commerce and Labor were separated in 1912. The Bureau remained in the Commerce Department until 1941 when it was merged with the Biological Survey and placed in the Department of Interior as the U.S. Fish and Wildlife Service. It was a scientific agency with well conceived programs of action, and it provided knowledge, advice, and example to state governments and individuals with fisheries interests and needs. Its efforts were supported by timely international agreements which constituted the precedent for Federal interest in fishery matters. The Fisheries Service earned stature as an advisor through heavy emphasis on basic biological research. The lack of such knowledge was marked and universal in the 1870’s, but toward the end of that decade, strong steps had been taken to address those needs under Baird’s leadership. USFC research activities were conducted cooperatively with other prominent scientists in the United States and abroad. Biological stations were established, and the world’s first and most productive deepsea research vessel, the Albatross, was constructed, and its 40-year career gave a strong stimulus to the science of oceanography. Together, the agency’s scientists and facilities made important additions to the sum of human knowledge, derived principles of conservation which were the vital bases for effective regulatory legislation, conducted extensive fish cultural work, collected and disseminated fisheries statistics, and began important research in methods of fish harvesting, preservation, transportation, and marketing.

Observations on Fisheries Activities at Navassa Island

Unmanaged and unquantified artisanal fishing is ongoing at Navassa Island, a small oceanic island about 70 km west of Haiti that is part of the U.S. Caribbean Islands National Wildlife Refuge. Concern has been expressed regarding the possible impact of these fishing activities on reef resources, and no quantitative catch or effort data are available. However, informal qualitative observations made during a cruise in November 2002 suggest that escalation in fishing activity (and impact) has occurred since previous observations made in April 2000. Namely, size structure of fish was markedly reduced and the adoption of net fishing has allowed the exploitation of queen conch, Strombas gigas, and hawksbill turtles, Eretmochelys imbricata.

NMFS Cooperative SharkTagging Program, 1962-93: An Atlas of SharkTag and Recapture Data

The National Marine Fisheries Service (NMFS) Cooperative Shark Tagging Program (CSTP) is part of continuing research directed to the study of the biology of large Atlantic sharks. The CSTP was initiated in 1962 at the Sandy Hook Laboratory in New Jersey under the Department of Interior's U.S. Fish and Wildlife Service (USFWS). During the late 1950's and early 1960's, sharks were considered a liability to the economy of resort communities, of little or no commercial value, and a detriment to fishermen in areas where sharks might damage expensive fishing gear or reduce catches of more commercially valuable species.