Reusability evaluation of component-based embedded automative software systems

Magdeburg, Univ., Fak. für Informatik, Diss., 2012

Analysis and removal of code clones in software product lines

Magdeburg, Univ., Fak. für Informatik, Diss., 2013

Hypermodelling : next level software engineering with data warehouses

Magdeburg, Univ., Fak. für Informatik, Diss., 2013

Software for Explicitly Parallel Memory-Centric Processor Architecture

Advances in computer memory technology justify research towards new and different views on computer organization. This paper proposes a novel memory-centric computing architecture with the goal to merge memory and processing elements in order to provide better conditions for parallelization and performance. The paper introduces the architectural concepts and afterwards shows the design and implementation of a corresponding assembler and simulator.

Software phantoms in medical image analysis

Magdeburg, Univ., Fak. für Informatik, Diss., 2015

Entwicklung einer benutzerfreundlichen Software zur Berechnung von Rundfunk-Sendeantennen

Die Abteilung Sendertechnik des Norddeutschen Rundfunks betreibt die Sender zur Versorgung der Rundfunknutzer und befasst sich unter anderem mit der Planung und Optimierung von Sendeantennen. Das Ziel dieser Bachelorarbeit war die Entwicklung einer Software, mit der Horizontaldiagramme von Antennen erstellt, angepasst und dokumentiert werden können. Dafür wurde eine vorhandene LabVIEW-Software in ihren Grundzügen übernommen, in eine neue, in Java entwickelte Programmumgebung übertragen und dort erweitert und optimiert. Die Arbeit dokumentiert die Grundlagen der Sendeantennenplanung und die programmiertechnischen Entwicklungsschritte bis hin zur fertiggestellten und funktionsfähigen Software. Im Speziellen geht sie dabei auf die Berechnung von Antennensystemen, die Erstellung von Horizontaldiagrammen sowie die objektorientierte Programmierung und die Erstellung von grafischen Benutzeroberflächen ein. Dabei werden die einzelnen Entwicklungsschritte dokumentiert und erläutert sowie die Validierung der Software beschrieben.

Software de monitorització de dades rebudes en un GPS

"Aquest document conté originàriament altre material i/o programari només consultable a la Biblioteca de Ciències i d'Enginyeries".

Software per al càlcul de la taxa de ventilació d'hivernacles multitúnel

La ventilació és un procés fonamental, que influeix en el clima interior de l'hivernacle. La ventilació contribueix al control de la temperatura, la humitat i la concentració de gasos (com el CO2) de l'aire interior i, en conseqüència, influeix en el creixement i desenvolupament dels conreus. Malgrat la seva importància, el seu càlcul resulta una mica complex. Amb l'objectiu de facilitar una aproximació a aquest valor, es presenta aquest full de càlcul. Introduint les dades del vostre hivernacle multitúnel i les condicions de vent, direcció i velocitat, s'obtindrà un valor d'aquestes renovacions. Instruccions per al Càlcul de la Taxa de Ventilació de l'Hivernacle Multitúnel 1. Introduir les dimensions de l'hivernacle (cel.les en vermell) 2. Característiques de les finestres 3. Introduir la velocitat del vent 4. Introduir la direcció en què es troben orientades les finestres en relació al vent

Mobilitat inter-plataforma d'agents software: protocol de migració fragmentada

En aquest projecte s'ha realitzat l'anàlisi, disseny i implementació d'un protocol de migració d'agents software basat en l'enviament del codi dels agents fragmentat en múltiples missatges. Aquest protocol es troba dins d'una arquitectura de migració multi-protocol per a la mobilitat d'agents entre plataformes JADE. Finalment, s'ha realitzat un estudi que compara el rendiment assolit pel protocol i les prestacions que aporta.

Results of An International Study of Quantitative BCR/ABL Assays Using Defined RNA Samples

Molecular monitoring of BCR/ABL transcripts by real time quantitative reverse transcription PCR (qRT-PCR) is an essential technique for clinical management of patients with BCR/ABL-positive CML and ALL. Though quantitative BCR/ABL assays are performed in hundreds of laboratories worldwide, results among these laboratories cannot be reliably compared due to heterogeneity in test methods, data analysis, reporting, and lack of quantitative standards. Recent efforts towards standardization have been limited in scope. Aliquots of RNA were sent to clinical test centers worldwide in order to evaluate methods and reporting for e1a2, b2a2, and b3a2 transcript levels using their own qRT-PCR assays. Total RNA was isolated from tissue culture cells that expressed each of the different BCR/ABL transcripts. Serial log dilutions were prepared, ranging from 100 to 10-5, in RNA isolated from HL60 cells. Laboratories performed 5 independent qRT-PCR reactions for each sample type at each dilution. In addition, 15 qRT-PCR reactions of the 10-3 b3a2 RNA dilution were run to assess reproducibility within and between laboratories. Participants were asked to run the samples following their standard protocols and to report cycle threshold (Ct), quantitative values for BCR/ABL and housekeeping genes, and ratios of BCR/ABL to housekeeping genes for each sample RNA. Thirty-seven (n=37) participants have submitted qRT-PCR results for analysis (36, 37, and 34 labs generated data for b2a2, b3a2, and e1a2, respectively). The limit of detection for this study was defined as the lowest dilution that a Ct value could be detected for all 5 replicates. For b2a2, 15, 16, 4, and 1 lab(s) showed a limit of detection at the 10-5, 10-4, 10-3, and 10-2 dilutions, respectively. For b3a2, 20, 13, and 4 labs showed a limit of detection at the 10-5, 10-4, and 10-3 dilutions, respectively. For e1a2, 10, 21, 2, and 1 lab(s) showed a limit of detection at the 10-5, 10-4, 10-3, and 10-2 dilutions, respectively. Log %BCR/ABL ratio values provided a method for comparing results between the different laboratories for each BCR/ABL dilution series. Linear regression analysis revealed concordance among the majority of participant data over the 10-1 to 10-4 dilutions. The overall slope values showed comparable results among the majority of b2a2 (mean=0.939; median=0.9627; range (0.399 - 1.1872)), b3a2 (mean=0.925; median=0.922; range (0.625 - 1.140)), and e1a2 (mean=0.897; median=0.909; range (0.5174 - 1.138)) laboratory results (Fig. 1-3)). Thirty-four (n=34) out of the 37 laboratories reported Ct values for all 15 replicates and only those with a complete data set were included in the inter-lab calculations. Eleven laboratories either did not report their copy number data or used other reporting units such as nanograms or cell numbers; therefore, only 26 laboratories were included in the overall analysis of copy numbers. The median copy number was 348.4, with a range from 15.6 to 547,000 copies (approximately a 4.5 log difference); the median intra-lab %CV was 19.2% with a range from 4.2% to 82.6%. While our international performance evaluation using serially diluted RNA samples has reinforced the fact that heterogeneity exists among clinical laboratories, it has also demonstrated that performance within a laboratory is overall very consistent. Accordingly, the availability of defined BCR/ABL RNAs may facilitate the validation of all phases of quantitative BCR/ABL analysis and may be extremely useful as a tool for monitoring assay performance. Ongoing analyses of these materials, along with the development of additional control materials, may solidify consensus around their application in routine laboratory testing and possible integration in worldwide efforts to standardize quantitative BCR/ABL testing.

Melanoma patients respond to a cytotoxic T lymphocyte-defined self-peptide with diverse and nonoverlapping T-cell receptor repertoires.

HLA-A2+ melanoma patients develop naturally a strong CD8+ T cell response to a self-peptide derived from Melan-A. Here, we have used HLA-A2/peptide tetramers to isolate Melan-A-specific T cells from tumor-infiltrated lymph nodes of two HLA-A2+ melanoma patients and analyzed their TCR beta chain V segment and complementarity determining region 3 length and sequence. We found a broad diversity in Melan-A-specific immune T-cell receptor (TCR) repertoires in terms of both TCR beta chain variable gene segment usage and clonal composition. In addition, immune TCR repertoires selected in the patients were not overlapping. In contrast to previously characterized CD8+ T-cell responses to viral infections, this study provides evidence against usage of highly restricted TCR repertoire in the natural response to a self-differentiation tumor antigen.

The change of behavior of two strains of Leishmania after cultivation in a defined medium

Attempts have been made to characterize two strains of Leishmania that became infective to golden hamsters only after they had been maintained for several years in a chemically defined culture medium. Observations were made on the growth rates of promastigotes in vitro, course of infection in hamsters, morphology of amastigotes, and electrophoretic mobility patterns of eight isoenzymes. Information was obtained about the buoyant densities of n-DNA and k-DNA, and one strain was tested against monoclonal antibodies. The identity of both strains remains obscure.

Biological aspects of the DM28C clone of Trypanosoma cruzi after metacylogenesis in chemically defined media

The biological characterization of the Trypanosoma cruzi clone Dm 28c in terms of its growth in LIT medium, cell-cycle, infectivity to mice and interaction with professional and non-professional phagocytic cells shows that it behaves as a bona fide T. cruzi representant. The biological properties of this myotropic clone do not change according to the origin of the trypomastigote forms (i. e., from triatomines, infected mice, cell-culture or from the chemically defined TAUP and TAU3AAG media). In addition Dm 28c metacyclic trypomastigotes from TAU3AAG medium display a high infectivity level to fibroblasts and muscle cells. Experiments on binding of cationized ferritin to trypomastigotes surface show the existence of cap-like structures of ferritin in regions near the kinetoplast. However the nature and role of these anionic sites remain to be determined. The results indicate that metacyclic trypomastigotes from Dm 28c clone obtained under chemically defined conditions reproduce the biological behaviour of T. cruzi, rendering this system very suitable for the study of cell-parasite interactions and for the isolation of trypanosome relevant macromolecules.