Yemaya No. 33, March 2010

Report/South Africa- Recasting the Net, What’s New, Webby?- European Parliament resolution recognizes women in fisheries,America/Canada- Stuck at the back of the boat, Milestones- Magna Carta of Women adopted in Philippines, Profile- Chitra Suriyakumar: Living in Hope, Report/India- Women, the Eyes of the World, Q&A- Interview with Clarisse Canha from Associação para a Igualdade e Direitos das Mulheres —Association for Equality and Rights for Women (UMAR-Azores), Yemaya Mama- ... sums it up !! Yemaya Recommends- Fisherwomen, Fishermen’s Wives.

Peces continentales de la Argentina: Bibliografía. Gymnocharacinus bergii.

Espanol: Este trabajo tiene como objetivo la recopilación de la información existente sobre las especies presentes en nuestro territorio. Para ello, se elaboraron fichas que contienen las referencias argentinas y de aquellas revisiones de autores extranjeros que involucran taxas de nuestro país. Como principales fuentes de información se consultaron Ringuelet et al. (1967), CLOFFSCA (2003), López et al. (2003; 2006), Liotta (2006) y las bases de datos on-line de W. N. Eschmeyer y Fish Base. Esta es una publicación abierta, por lo que requerirá de actualización permanente, para lo cual sería necesario se sume a nuestra tarea la buena voluntad y colaboración de la comunidad ictiológica. Esperamos con este aporte colaborar en la construcción de una base de datos de los peces continentales de la Argentina. La concreción de esta herramienta dará soporte a los planes generados desde los diferentes sectores involucrados en el tema, además de fomentar la difusión de la disciplina y la reafirmación de los derechos soberanos sobre nuestros recursos naturales. English: The goal of this work is to compile the existing information about the species present in our country. This has been done by means of datasheets that list both local references and reviews by foreign authors that include Argentine taxa. The main information sources consulted were Ringuelet et al. (1967), CLOFFSCA (2003), López et al. (2003; 2006), Liotta (2006) and the online databases of W. N. Eschmeyer and Fish Base. This is an open-ended publication. As such, it will require permanent updating, which will depend on the good will and collaboration of the ichthyological community. With this contribution, we hope to help to build a database of the freshwater fish of Argentina. The completion of this project will provide support to diverse plans emanating from different sectors, as well as promote the diffusion of this field of research and reaffirm Argentina’s sovereign rights over our natural resources. (Texto en Espanol Y English. PDF tiene nueve paginas.)

Peces continentales de la Argentina: Bibliografía. Lepidosiren paradoxa.

Espanol: Este trabajo tiene como objetivo la recopilación de la información existente sobre las especies presentes en nuestro territorio. Para ello, se elaboraron fichas que contienen las referencias argentinas y de aquellas revisiones de autores extranjeros que involucran taxas de nuestro país. Como principales fuentes de información se consultaron Ringuelet et al. (1967), CLOFFSCA (2003), López et al. (2003; 2006), Liotta (2006) y las bases de datos on-line de W. N. Eschmeyer y Fish Base. Esta es una publicación abierta, por lo que requerirá de actualización permanente, para lo cual sería necesario se sume a nuestra tarea la buena voluntad y colaboración de la comunidad ictiológica. Esperamos con este aporte colaborar en la construcción de una base de datos de los peces continentales de la Argentina. La concreción de esta herramienta dará soporte a los planes generados desde los diferentes sectores involucrados en el tema, además de fomentar la difusión de la disciplina y la reafirmación de los derechos soberanos sobre nuestros recursos naturales. English: The goal of this work is to compile the existing information about the species present in our country. This has been done by means of datasheets that list both local references and reviews by foreign authors that include Argentine taxa. The main information sources consulted were Ringuelet et al. (1967), CLOFFSCA (2003), López et al. (2003; 2006), Liotta (2006) and the online databases of W. N. Eschmeyer and Fish Base. This is an open-ended publication. As such, it will require permanent updating, which will depend on the good will and collaboration of the ichthyological community. With this contribution, we hope to help to build a database of the freshwater fish of Argentina. The completion of this project will provide support to diverse plans emanating from different sectors, as well as promote the diffusion of this field of research and reaffirm Argentina’s sovereign rights over our natural resources. (Texto en English y Espanol. PDF tiene ocho paginas.)

Visualization of molecule interaction between antigen and antibody - One of ellipsometric imaging applications

It is to investigate molecule interactions between antigen and antibody with ellipsometric imaging technique and demonstrate some features and possibilities offered by applications of the technique. Molecule interaction is an important interest for molecule biologist and immunologist. They have used some established methods such as immufluorcence, radioimmunoassay and surface plasma resonance, etc, to study the molecule interaction. At the same time, experimentalists hope to use some updated technique with more direct visual results. Ellipsometric imaging is non-destructive and exhibits a high sensitivity to phase transitions with thin layers. It is capable of imaging local variations in the optical properties such as thickness due to the presence of different surface concentration of molecule or different deposited molecules. If a molecular mono-layer (such as antigen) with bio-activity were deposited on a surface to form a sensing surface and then incubated in a solution with other molecules (such as antibody), a variation of the layer thickness when the molecules on the sensing surface reacted with the others in the solution could be observed with ellipsometric imaging. Every point on the surface was measured at the same time with a high sensitivity to distinguish the variation between mono-layer and molecular complexes. Ellipsometric imaging is based on conventional ellipsometry with charge coupled device (CCD) as detector and images are caught with computer with image processing technique. It has advantages of high sensitivity to thickness variation (resolution in the order of angstrom), big field of view (in square centimeter), high sampling speed (a picture taken within one second), and high lateral resolution (in the order of micrometer). Here it has just shown one application in study of antigen-antibody interaction, and it is possible to observe molecule interaction process with an in-situ technique.

Toward canonical trophic aggregations

The attractiveness of the trophic concept is that it was the first attempt at a holistic perspective on an ecosystem which met with any degree of success. Just as temperature, pressure, and volume allow one to characterize the incomprehensible multitude of particulate motions in a simple gas, the hope is that a small set of figures, such as trophic storages or trophic efficiencies, permit one to compare two ecosystems with overwhelmingly disparate complexities. Thus, if it were possible to demonstrate that an arbitrary network of ecosystem flows could be reduced to a trophic configuration, the aggregation process thus defined would become a key component of the evolving discipline of "macroscopic ecology" (see also Odum 1977 and Ulanowicz 1979).

User’s Guide to ADMB2R: A Set of AD Model Builder Output Routines Compatible with the R Statistics Language

ADMB2R is a collection of AD Model Builder routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 ADMB2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanism to store data for future reference. We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings. We thus developed the ADMB2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later. We offer ADMB2R to others in the hope that they will find it useful. (PDF contains 30 pages)

User’s Guide to C2R: A Set of C Language Output Routines Compatible with the R Statistics Language

C2R is a collection of C routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 C2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanism to store data for future reference. We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings. We thus developed the C2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later. We offer C2R to others in the hope that they will find it useful. (PDF contains 27 pages)

User’s Guide to For2R: A Module of Fortran 95 Output Routines Compatible with the R Statistics Language

For2R is a collection of Fortran routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 For2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanism to store data for future reference. We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings. We thus developed the For2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later. We offer For2R to others in the hope that they will find it useful. (PDF contains 31 pages)

An assessment of two decades of contaminant monitoring in the Nation’s Coastal Zone.

Executive Summary: Information found in this report covers the years 1986 through 2005. Mussel Watch began monitoring a suite of trace metals and organic contaminants such as DDT, PCBs and PAHs. Through time additional chemicals were added, and today approximately 140 analytes are monitored. The Mussel Watch Program is the longest running estuarine and coastal pollutant monitoring effort conducted in the United States that is national in scope each year. Hundreds of scientific journal articles and technical reports based on Mussel Watch data have been written; however, this report is the first that presents local, regional and national findings across all years in a Quick Reference format, suitable for use by policy makers, scientists, resource managers and the general public. Pollution often starts at the local scale where high concentrations point to a specific source of contamination, yet some contaminants such as PCBs are atmospherically transported across regional and national scales, resulting in contamination far from their origin. Findings presented here showed few national trends for trace metals and decreasing trends for most organic contaminants; however, a wide variety of trends, both increasing and decreasing, emerge at regional and local levels. For most organic contaminants, trends have resulted from state and federal regulation. The highest concentrations for both metal and organic contaminants are found near urban and industrial areas. In addition to monitoring throughout the nation’s coastal shores and Great Lakes, Mussel Watch samples are stored in a specimen bank so that trends can be determined retrospectively for new and emerging contaminants of concern. For example, there is heightened awareness of a group of flame retardants that are finding their way into the marine environment. These compounds, known as polybrominated diphenyl ethers (PBDEs), are now being studied using historic samples from the specimen bank and current samples to determine their spatial distribution. We will continue to use this kind of investigation to assess new contaminant threats. We hope you find this document to be valuable, and that you continue to look towards the Mussel Watch Program for information on the condition of your coastal waters. (PDF contains 118 pages)

Emerging trends and experiences in Asia-Pacific aquaculture: 2003

This document provides an overview of topical issues in Asian aquaculture for 2003, including a review of its status, progress in research and development, major issues and experiences, together with suggestions on actions for addressing opportunities and constraints. The document has been prepared by NACA and FAO to facilitate discussions at the 15th NACA Governing Council meeting, hosted by the Government of Sri Lanka on 21st-25th April 2004. The final version will be widely circulated as the editors hope it will prove a useful document for all involved in aquaculture, and related fishery development in the Asia-Pacific region. Pending feedback on this 2003 document, further reviews may be considered by NACA and FAO as a way of bringing together regularly in one publication relevant and key issues facing development of aquaculture in the Asia-Pacific region. (PDF contains 153 pages)

A Floristic and ecological survey of Assateague Island, Virgina-Maryland

Assateague Island is an offshore bar comprising the south-eastern coast of Maryland and the northeastern coast of Virgina. It is part of the system of discontinuous barrier reefs or bars which occupy most of the Atlantic shoreline from Florida to Massachusetts. These are unstable bars, continuously influenced by storm winds and tides which provide a distinct and rigorous habitat for the vegetation there. General floras of the Delmarva Peninusla do not mention Assateague Island specifically. The objective is to prepare a catalog of the vascular plants of Assateague Island and to describe the communities in which they are found, in the hope it will add to the knowledge of barrier reef vegetation.

Peces continentales de la Argentina: Bibliografía. Brycon orbignyanus.

The goal of this work is to compile the existing information about the species present in our country. This has been done by means of datasheets that list both local references and reviews by foreign authors that include Argentine taxa. The main information sources consulted were Ringuelet et al. (1967), CLOFFSCA (2003), López et al. (2003; 2006), Liotta (2006) and the online databases of W. N. Eschmeyer and Fish Base. This is an open-ended publication. As such, it will require permanent updating, which will depend on the good will and collaboration of the ichthyological community. With this contribution, we hope to help to build a database of the freshwater fish of Argentina. The completion of this project will provide support to diverse plans emanating from different sectors, as well as promote the diffusion of this field of research and reaffirm Argentina’s sovereign rights over our natural resources. (PDF tiene 9 paginas.)

Green Guide to the Cayman Islands 1: The marine environment

In the Cayman Islands we are enriched with a wonderful natural environment. In this Green Guide to our Marine Environment we hope to show you how all of our lives on these three magical islands are intimately connected to the land and the sea that surrounds it. Like many of our Caribbean neighbours, a large proportion of our economy depends on reef-based fishing, diving and tourism. The beauty of our coral reefs, our beaches and our lagoons is that it is part of our heritage, and it draws many thousands of overseas visitors to our shores. It is our responsibility, as stakeholders sharing this beautiful environment, to do what we can to minimise our impact upon it. Ogier has sponsored the Green Guide, and through this publication, is helping us to preserve our natural and cultural heritage.... [PDF contains 32 pages]

Adsorption of formaldehyde molecule on the intrinsic and Al-doped graphene: a first principle study

To search for a high sensitivity sensor for formaldehyde (H2CO), We investigated the adsorption of H2CO on the intrinsic and Al-doped graphene sheets using density functional theory (DFT) calculations. Compared with the intrinsic graphene, the Al-doped graphene system has high binding energy value and short connecting distance, which are caused by the chemisorption of H2CO molecule. Furthermore, the density of states (DOS) results show that orbital hybridization could be seen between H2CO and Al-doped graphene sheet, while there is no evidence for hybridization between the H2CO molecule and the intrinsic graphene sheet. Therefore, Al-doped graphene is expected to be a novel chemical sensor for H2CO gas. We hope our calculations are useful for the application of graphene in chemical sensor.

More than one language in the brain

Boeckx C., M.C. Horno & J.L. Mendívil (Eds.)