Spatial dynamics of bovine tuberculosis in the Autonomous Community of Madrid, Spain (2010-2012)

Progress in control of bovine tuberculosis (bTB) is often not uniform, usually due to the effect of one or more sometimes unknown epidemiological factors impairing the success of eradication programs. Use of spatial analysis can help to identify clusters of persistence of disease, leading to the identification of these factors thus allowing the implementation of targeted control measures, and may provide some insights of disease transmission, particularly when combined with molecular typing techniques. Here, the spatial dynamics of bTB in a high prevalence region of Spain were assessed during a three year period (2010-2012) using data from the eradication campaigns to detect clusters of positive bTB herds and of those infected with certain Mycobacterium bovis strains (characterized using spoligotyping and VNTR typing). In addition, the within-herd transmission coefficient (β) was estimated in infected herds and its spatial distribution and association with other potential outbreak and herd variables was evaluated. Significant clustering of positive herds was identified in the three years of the study in the same location ("high risk area"). Three spoligotypes (SB0339, SB0121 and SB1142) accounted for >70% of the outbreaks detected in the three years. VNTR subtyping revealed the presence of few but highly prevalent strains within the high risk area, suggesting maintained transmission in the area. The spatial autocorrelation found in the distribution of the estimated within-herd transmission coefficients in herds located within distances <14 km and the results of the spatial regression analysis, support the hypothesis of shared local factors affecting disease transmission in farms located at a close proximity.

Hierarchical spatial segregation of two Mediterranean vole species: the role of patch‑network structure and matrix composition

According to ecological theory, the coexistence of competitors in patchy environments may be facilitated by hierarchical spatial segregation along axes of environmental variation, but empirical evidence is limited. Cabrera and water voles show a metapopulation-like structure in Mediterranean farmland, where they are known to segregate along space, habitat, and time axes within habitat patches. Here, we assess whether segregation also occurs among and within landscapes, and how this is influenced by patch-network and matrix composition. We surveyed 75 landscapes, each covering 78 ha, where we mapped all habitat patches potentially suitable for Cabrera and water voles, and the area effectively occupied by each species (extent of occupancy). The relatively large water vole tended to be the sole occupant of landscapes with high habitat amount but relatively low patch density (i.e., with a few large patches), and with a predominantly agricultural matrix, whereas landscapes with high patch density (i.e.,many small patches) and low agricultural cover, tended to be occupied exclusively by the small Cabrera vole. The two species tended to co-occur in landscapes with intermediate patch-network and matrix characteristics, though their extents of occurrence were negatively correlated after controlling for environmental effects. In combination with our previous studies on the Cabrera-water vole system, these findings illustrated empirically the occurrence of hierarchical spatial segregation, ranging from withinpatches to among-landscapes. Overall, our study suggests that recognizing the hierarchical nature of spatial segregation patterns and their major environmental drivers should enhance our understanding of species coexistence in patchy environments.

Spatial variability of satured soil hydraulic conductivity in the region of Araguaia River - Brazil.

This study evaluates the spatial variability of saturated hydraulic conductivity in the soil in an area of 51,850 ha at the headwaters of the Araguaia River MT/GO. This area is highly vulnerable because it is a location of recharging through natural water infiltration of the Guarani Aquifer System and an area of intense increases in agriculture since its adoption by growers in the last 30 years. Soil samples were collected at 383 points, geographically located by GPS. The samples were collected from depths of 0 - 20 cm and 60 - 80 cm. Exploratory statistics and box-plot were used in the descriptive analysis and semivariogram were constructed to determine the spatial model. The exploratory analysis showed that the mean hydraulic conductivity in the superficial layer was less than at the level of 60-80 cm; however, the greatest variability evaluated with a coefficient of variation also was from this layer. Data tended towards a normal distribution. These results can be explained by the greater soil compaction in the superficial layer. The semivariogram models, adjusted for the two layers, were exponential and demonstrated moderate and strong dependence, with ranges of 5000 and 3000 utm respectively. It was concluded that soil use is influencing the spatial distribution model of the hydraulic conductivity in the region.

Spatial variability of satured soil hydraulic conductivity in the region of Araguaia River - Brazil.

2008

Changes in the spatial distribution of tree species in a terra firme rain forest in Brazilian Amazonia after logging.

The objective of this paper was to determine changes in the spatial distribution of tree species in a logged compared to an unlogged forest of the Tapajos National Forest in the municipality of Belterra, State of Para, Brazil, over an eight-year period. The distribution pattern was determined for trees> 5 cm dbh and, also, for trees > 30 cm dbh. The relationship (a quadrate method) discussed by McGinnis was selected to be used in this study. Forty-seven percent of species with trees > 5 cm dbh showed clumped distribution in the studied forests. Geissospermwn sericeunz Benth & Hook., Minquartia guianensis Aubl., Poureria bilocularis (H. Winkler) Bachni, Protium guacayantan Cuatrec, Sclerolobium chrysophyllunz Poepp. et Endl. and the Sapotaceae family (9 species) occurred in clumps of small trees (5 cm 5 dbh < 30 cm) and big trees (dbh > 30 cm) in both the logged and undisturbed forest. Trees in all sizes of these species certainly have aggregation characteristics in different light condition's during the whole growth-cycle. Only Sclerolobium cizzysophylltan out of fourteen species that occurred aggregated in all forest conditions was light demanding. The shade-tolerant Lecythis lurida (Miers) Mori and Manilkara huberi (Ducke) Stand!. showed also aggregated distribution for small and big trees in the unlogged forest. An aggregated distribution is not always directly correlated to abundance, considering that most of the clumped species had less than seven trees per hectare.

Soil N²O emissions from long-term agroecosystems: interactive effects of rainfall seasonality and crop rotation in the Brazilian cerrado.

2016

Co-Infestation and Spatial Distribution of Bactrocera carambolae and Anastrepha spp. (Diptera: Tephritidae) in Common Guava in the Eastern Amazon.

Field infestation and spatial distribution of introduced Bactrocera carambolae Drew and Hancock and native species of Anastrepha in common guavas [Psidium guajava (L.)] were investigated in the eastern Amazon. Fruit sampling was carried out in the municipalities of Calc¸oene and Oiapoque in the state of Amapa, Brazil. The frequency distribution of larvae in fruit was fitted to the negative binomial distribution. Anastrepha striata was more abundant in both sampled areas in comparison to Anastrepha fraterculus (Wiedemann) and B. carambolae. The frequency distribution analysis of adults revealed an aggregated pattern for B. carambolae as well as for A. fraterculus and Anastrepha striata Schiner, described by the negative binomial distribution. Although the populations of Anastrepha spp. may have suffered some impact due to the presence of B. carambolae, the results are still not robust enough to indicate effective reduction in the abundance of Anastrepha spp. caused by B. carambolae in a general sense. The high degree of aggregation observed for both species suggests interspecific co-occurrence with the simultaneous presence of both species in the analysed fruit. Moreover, a significant fraction of uninfested guavas also indicated absence of competitive displacement.

Analysis of spatial variation of tree heights in an urban area using LiDAR data.

Estimating with greater precision and accuracy the height of plants has been a challenge for the scientific community. The objective this study is to evaluate the spatial variation of tree heights at different spatial scales in areas of the city of Recife, Brazil, using LiDAR remote sensing data. The LiDAR data were processed in the QT Modeler (Quick Terrain Modeler v. 8.0.2) software from Applied Imagery. The TreeVaW software was utilized to estimate the heights and crown diameters of trees. The results obtained for tree height were consistent with field measurements.

Spatial variability of inceptisol and entisol soils and their effect on merlot grape must composition.

2012

The spatial association of numbers and mathematical symbols

The "SNARC effect" refers to the finding that people respond faster to small numbers with the left hand and to large numbers with the right hand. This effect is often explained by hypothesizing that numbers are represented from left to right in ascending order (Mental Number Line). However, the SNARC effect may not depend on quantitative information, but on other factors such as the order in which numbers are often represented from left to right in our culture. Four experiments were performed to test this hypothesis. In the first experiment, the concept of spatial association was extended to nonnumeric mathematical symbols: the minus and plus symbols. These symbols were presented as fixation points in a spatial compatibility paradigm. The results demonstrated an opposite influence of the two symbols on the target stimulus: the minus symbol tends to favor the target presented on the left, while the plus symbol the target presented on the right, demonstrating that spatial association can emerge in the absence of a numerical context. In the last three experiments, the relationship between quantity and order was evaluated using normal numbers and mirror numbers. Although mirror numbers denote quantity, they are not encountered in a left-to-right spatial organization. In Experiments 1 and 2, participants performed a magnitude classification task with mirror and normal numbers presented together (Experiment 1) or separately (Experiment 2). In Experiment 3, participants performed a new task in which quantity information processing was not required: the mirror judgment task. The results show that participants access the quantity of both normal and mirror numbers, but only the normal numbers are spatially organized from left to right. In addition, the physical similarity between the numbers, used as a predictor variable in the last three experiments, showed that the physical characteristics of numbers influenced participants' reaction times.

Data analysis and hydrological modelling of rainfall and discharge extremes along the Tione River: implications for the design of water structures

There are many natural events that can negatively affect the urban ecosystem, but weather-climate variations are certainly among the most significant. The history of settlements has been characterized by extreme events like earthquakes and floods, which repeat themselves at different times, causing extensive damage to the built heritage on a structural and urban scale. Changes in climate also alter various climatic subsystems, changing rainfall regimes and hydrological cycles, increasing the frequency and intensity of extreme precipitation events (heavy rainfall).  From an hydrological risk perspective, it is crucial to understand future events that could occur and their magnitude in order to design safer infrastructures. Unfortunately, it is not easy to understand future scenarios as the complexity of climate is enormous.  For this thesis, precipitation and discharge extremes were primarily used as data sources. It is important to underline that the two data sets are not separated: changes in rainfall regime, due to climate change, could significantly affect overflows into receiving water bodies. It is imperative that we understand and model climate change effects on water structures to support the development of adaptation strategies.   The main purpose of this thesis is to search for suitable water structures for a road located along the Tione River. Therefore, through the analysis of the area from a hydrological point of view, we aim to guarantee the safety of the infrastructure over time.   The observations made have the purpose to underline how models such as a stochastic one can improve the quality of an analysis for design purposes, and influence choices.

Diagnosing atmosphere–land feedbacks in CMIP5 climate models

Human-made transformations to the environment, and in particular the land surface, are having a large impact on the distribution (in both time and space) of rainfall, upon which all life is reliant. Focusing on precipitation, soil moisture and near-surface temperature, we compare data from Phase 5 of the Climate Modelling Intercomparison Project (CMIP5), as well as blended observational–satellite data, to see how the interaction between rainfall and the land surface differs (or agrees) between the models and reality, at daily timescales. As expected, the results suggest a strong positive relationship between precipitation and soil moisture when precipitation leads and is concurrent with soil moisture estimates, for the tropics as a whole. Conversely a negative relationship is shown when soil moisture leads rainfall by a day or more. A weak positive relationship between precipitation and temperature is shown when either leads by one day, whereas a weak negative relationship is shown over the same time period between soil moisture and temperature. Temporally, in terms of lag and lead relationships, the models appear to be in agreement on the overall patterns of correlation between rainfall and soil moisture. However, in terms of spatial patterns, a comparison of these relationships across all available models reveals considerable variability in the ability of the models to reproduce the correlations between precipitation and soil moisture. There is also a difference in the timings of the correlations, with some models showing the highest positive correlations when precipitation leads soil moisture by one day. Finally, the results suggest that there are 'hotspots' of high linear gradients between precipitation and soil moisture, corresponding to regions experiencing heavy rainfall. These results point to an inability of the CMIP5 models to simulate a positive feedback between soil moisture and precipitation at daily timescales. Longer timescale comparisons and experiments at higher spatial resolutions, where the impact of the spatial heterogeneity of rainfall on the initiation of convection and supply of moisture is included, would be expected to improve process understanding further.

Estudo comparativo da distribuição espaço-temporal da precipitação na Amazônia Oriental

Este trabalho utilizou os dados de precipitação do período de janeiro de 2000 a setembro de 2007 da torre micrometeorológica localizada na Estação Científica Ferreira Pena (ECFP) em Caxiuanã e foram comparados com o algoritmo 3B42 que combina dados de satélites no canal de microoondas para ajustar aqueles do canal infravermelho. Adicionalmente foi feita uma análise da distribuição temporal e espacial da precipitação na Amazônia Oriental utilizando os dados de cinco algoritmos estimadores de precipitação: O Geostationary Environmental SalellitePrecipitation lndex (GPI); o 3B42; 3A12 e 3A25 que são os algoritmos provenientes dos sensores de microondas e do radar meteorológico à bordo do satélite Tropical Rainfall MeasuringMission (TRMM); e o Global Precipitation Climatology Center (GPCC) de janeiro de 1998 a dezembro de 2007. A comparação entre o algoritmo 3B42 com os dados do pluviógrafo da torre mostrou que o estimador 3B42 superestima a precipitação em relação aos dados da torre para todo o período de estudo. Os períodos mais chuvosos foram os trimestres de março-abril-maio (MAM) e dezembro-janeiro-feveireiro (DJF) e os períodos menos chuvosos foram setembro-outubro-novembro (SON) e junho-julho-agosto (JJA). Esta sazonalidade da precipitação se apresenta principalmente devido à influência da Zona de Convergência Intertropical (ZCIT), que contribui de maneira apreciável para a modulação da estação chuvosa na região. A comparação trimestral entre o algoritmo 3B42 e pluviógrafo da torre, mostra que o algoritmo 3B42 superestimou (subestimou) a precipitação em relação ao pluviógrafo em MAM e JJA (DJF e SON); e DJF é o trimestre que apresenta as estimativas de precipitação com valores mais aproximados a precipitação medida na torre micrometeorológica de Caxiuanã. Na média mensal o 3B42 subestima a precipitação de outubro a janeiro e superestima em relação as dados medidos na torre, de março a agosto. O algoritmo3B42 superestimou (subestimou) a precipitação noturna (matutina e vespertina) do ciclo diurno em relação ao pluviógrafo da torre, nas vizinhanças de Caxiuanã. No entanto ambos estimadores mostraram que em média o horário de maior precipitação é por volta das 1800hora local (HL). Além disso, as análises do ciclo diurno médio sazonal indicam que em DJF nos horários de 0900 HL, 1500 HL e 1800HL têm os valores de precipitação estimada pelo algoritmo3B42 mais aproximados aos valores da precipitação medida pontualmente em Caxiuanã. Os meses de novembro a fevereiro têm um máximo principal de precipitação no período vespertino, tanto na torre como no algoritmo 3B42. No período de maio à julho o horário os máximos diurnos de precipitação passam do período da tarde para os da noite e madrugada,modificando o ciclo diurno em comparação aos demais meses. A comparação entre os cinco algoritmos na Amazônia Oriental mostrou diferentes comportamentos entre os estimadores. O algoritmo GPI subestimou s precipitação em relação aos demais algoritmos na região costeira do Amapá e Guiana Francesa e superestimou na região central da Amazônia. Tanto o algoritmo 3A12 quanto o 3A25 apresentaram menor precipitação que os demais algoritmos. O algoritmo 3842, por ser uma combinação de várias estimativas baseadas no canal de microondas e infravermelho, apresenta padrões semelhantes a Figueroa e Nobre (1990). No entanto, o GPCC mostra menos detalhes na distribuição espacial de precipitação nos lugares onde não há pluviômetros como, por exemplo, no Noroeste do Pará. As diferenças entre os algoritmos aqui considerados podem estar relacionados com as características de cada algoritmo e/ou a metodologia empregada. As comparações pontuais de precipitação de um pluviômetro com a média numa área com dados provenientes de satélites podem ser a explicação para as diferenças entre os estimadores nos trimestres ou ciclo diurno. No entanto não se descartam que essas diferenças sejam devidas à diferente natureza da precipitação entre as subregiões, assim como a existência de diferentes sistemas que modulam o ciclo diurno da precipitação na Amazônia Oriental.

As chuvas na bacia hidrográfica do rio Paraná, Brasil: um estudo do ritmo climático e algumas considerações sobre a vazão hídrica

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Pluviosidade, circulação atmosférica e vazão hídrica na bacia do rio Itajaí, Santa Catarina, Brasil

This research sought to understand the temporal and spatial distribution of rainfall and its effect on water dynamics on a regional basis, taking into account the pace of climate paradigm. The study area covers the entire river basin of the Itajai and its surroundings understood, roughly, between parallels 26° and 28° south latitude and 48° and 50° 30' west longitude, place of constant heavy rains and floods. In this region, pluviometric and fluviometric data were obtained, the variables of rainfall and water flow, which were compiled and analyzed using spreadsheets in order to get the series with more homogeneous data as possible for good analysis, the period between 1953 and 1982. This historical period has passed in principle by an analysis which sought to highlight the variability and distribution of rainfall and water flow in the basin-level annual, techniques which were used that allowed the choice of standard year representative (rainy, dry , usual) series. These obtained years (1957, 1968 and 1971, respectively) underwent a detailed analysis on the monthly level, providing good interpretation of the dynamic behavior of rain associated with dynamic water flow for these representative years