Population structure, feeding and reproductive aspects of Serrapinnus heterodon (Characidae, Cheirodontinae) in a Mogi Guaçu reservoir (SP), upper Paraná River basin

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Biological aspects of Schizodon nasutus Kner, 1858 (Characiformes, Anostomidae) in the low Sorocaba river basin, São Paulo state, Brazil

Four biological aspects of Schizodon nasutus in the low Sorocaba river basin, São Paulo, Brazil were analysed. These were accomplished during the year seasons. The fish diet and the feeding activity were investigated by studying the repletion index, which showed no significant differences between seasons. The food items analysed by frequency of occurrence and dominance showed a predominance of vegetable items in the diet. The reproduction, analysed by using the gonadosomatic index, indicated that the reproductive period occurs during the summer period when temperatures are higher and rainfalls are more intense. The amount of accumulated fat and condition factor varied according to reproduction, especially for females.

CONDITION of Hoplias aff. malabaricus (BLOCH, 1794) IN TWO COASTAL STREAMS of ITANHAEM RIVER BASIN, BRAZIL

The main purpose of this research was to measure the condition of the fish species Hoplias aff. malabaricus collected in Aguapeu River (black waters) and Branco River (white waters), which belong to Itanhaem River basin, a coastal watershed in São Paulo state, Brazil. Individuals of Hoplias aff. malabaricus were sampled by using gill nets, monthly from March 2001 to February 2002. The Condition Factor was obtained through the length-weight relationship, assuming that the higher the mass for a given length, the better the condition of the fish. The Condition Factor was compared among fishes from both rivers, resulting that Branco River individuals have significantly lower condition. Limnological aspects were studied from May 2001 to November 2002 and some show significant differences between Aguapeu River and Branco River. These were salinity, do and total organic N, which the higher values being observed in Branco River propably due to estuarine waters influence. However, the lower condition of the Branco River fishes should also be an effect of a disturbance due to the sand mining in this river, since this activity cause important alterations to the environment, affecting the whole biota, included aquatic macrophytes, invertebrates and fishes.

Reproductive strategies of two Curimatidae species in a Mogi Guacu impoundment, upper Parana River basin, São Paulo, Brazil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Resources Taken to the Nest by Protopolybia exigua (Hymenoptera, Vespidae) in Different Phases of the Colony Cycle, in a Region of the Medio Sao Francisco River, Bahia, Brazil

The present study aimed to identify what resources were taken to the nest by workers of Protopolybia exigua (de Saussure), to verify if there is a relationship between physical factors of weather and phases of colony development and the collection of different resources and also to observe if the wasps carry macerated prey in the crop. The species collected nectar (62.8%), wood pulp for nest building (6.1%), water(2.9%), prey (0.8%) and resin (0.2%). Moreover, workers of P exigua do carry macerated prey in the crop. There was a positive correlation (r = 0.85, p = 0.0004) between the presence of larvae in the nest and the carrying of solid contents in the crop, which provides strong evidence that this species macerates its prey while still in the field, before taking it to the nest. There was positive influence of the temperature on the collection of nectar (r = 0.89, p = 0.0001) and water (r = 0.46, p = 0.0066) and negative influence of relative air humidity on the collection of the same resources (r = - 0.88, p = 0.0001 and r = - 0.37, p = 0.0160, respectively). Luminosity influenced the gathering of water (r = 0.43, p = 0.0089) and Pulp for nest building (r = 0.31, p = 0.0274) and the wind speed did nor influence the collection of any resources. Nectar is the main item taken to the nest during all phases of the colony.

Bioconcentration of Cd and Pb by the River Crab Trichodactylus fluviatilis (Crustacea: Decapoda)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Fish, Passa Cinco stream, Corumbatai River basin, state of São Paulo, Brazil.

The fishes of the present study were collected in Passa Cinco stream, a main river of Corumbatai river basin, Tiete drainage. Five sites were selected in that stream, downstream from headwater to its mouth, and six samplings were performed using the following fishery equipment: a sieve, electric fishery equipment, gill nets and fish-traps. 5082 individuals, 62 species, 18 families and 6 orders were captured. The orders Characiformes and Siluriformes were the most representative and the families Characidae and Loricariidae presented the largest in number of species.

Use of the freshwater crab Trichodactylus fluviatilis to biomonitoring Al and Mn contamination in river water.

Determinations of Al and Mn concentrations in the tissues (gills, hepatopancreas and muscle) of the freshwater crab Trichodactylus fluviatilis and water samples, both collected from sites on tributaries of the Corumbatai River (São Paulo, Brazil) were performed. The Bioaccumulation Factor (BAF), calculated for different sites with respect to the water concentration, ranged from 173-555 for Al and from 636 - 921 for Mn. Dissolved concentrations of Al and Mn in water samples (collected in different sites) were related to the accumulation of these metals in crabs, suggesting that T. fluviatilis is good biomonitor for Al and Mn pollution in aquatic ecosystem.

A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 7 and comparative mapping to the cattle and human genomes

A preliminary radiation hybrid (RH) map containing 50 loci on chromosome 7 of the domestic river buffalo Bubalus bubalis (BBU; 2n = 50) was constructed based on a comparative mapping approach. The RH map of BBU7 includes thirty-seven gene markers and thirteen microsatellites. All loci have been previously assigned to Bos taurus (BTA) chromosome BTA6, which is known for its association with several economically important milk production traits in cattle. The map consists of two linkage groups spanning a total length of 627.9 cR(5,000). Comparative analysis of the BBU7 RH 5,000 map with BTA6 in cattle gave new evidence for strong similarity between the two chromosomes over their entire length and exposed minor differences in locus order. Comparison of the BBU7 RH 5,000 map with the Homo sapiens (HSA) genome revealed similarity with a large chromosome segment of HSA4. Comparative analysis of loci in both species revealed more variability than previously known in gene order and several chromosome rearrangements including centromere relocation. The data obtained in our study define the evolutionarily conserved segment on BBU7 and HSA4 to be between 3.5 megabases (Mb) and 115.8 Mb in the HSA4 (genome build 36) DNA sequence. Copyright (c) 2008 S. Karger AG, Basel.

A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 1 (BBU1)

The largest chromosome in the river buffalo karyotype, BBU1, is a submetacentric chromosome with reported homology between BBU1q and bovine chromosome 1 and between BBU1p and BTA27. We present the first radiation hybrid map of this chromosome containing 69 cattle derived markers including 48 coding genes, 17 microsatellites and four ESTs distributed in two linkage groups spanning a total length of 1330.1 cR(5000). The RH map was constructed based on analysis of a recently developed river buffalo-hamster whole genome radiation hybrid (BBURH5000) panel. The retention frequency of individual markers across the panel ranged from 17.8 to 52.2%. With few exceptions, the order of markers within linkage groups is identical to the order established for corresponding cattle RH maps. The BBU1 map provides a starting point for comparison of gene order rearrangements between river buffalo chromosome 1 and its bovine homologs. Copyright (C) 2007 S. Karger AG, Basel.

Microsatellite loci isolation from river buffalo using enriched partial genomic libraries

The extensive use of buffalo in agriculture, especially in developing countries, begs for genetic resources to evaluate and improve traits important to local and regional economies. Brazil presents the largest water buffalo populations in the New World, with 1 1 million heads including swamp and river types. To design rational breeding strategies for optimum utilization and conservation of available genetic variability in the Brazilian buffalo's population, it is essential to understand their genetic architecture and relationship among various breeds. This depends, in part, on the knowledge of their genetic structure based on molecular markers like microsatellites. In the present study, we developed six enriched partial genomic libraries for river buffalo using selective hybridization methods. Genomic DNA was hybridized with six different arrays of repeat motif, 5' biotinylated - (CA)(15), (CT)(15), (AGG)(8), (GAAA)(8), (GATA)(8), (AAAAC)(8) - and bound to streptavidin coated beads. The cloning process generated a total of 1920 recombinant clones. Up to date, 487 were directly sequenced for the presence of repeats, from which 13 have been positive for presence of repeats as follows: 9 for di-nucleotide repeats, 3 for tri-nucleotide repeats and 1 for tetra-nucleotide repeat. PCR primer pairs for the isolated microsatellites are under construction to determine optimum annealing temperature. These microsatellites will be useful for studies involving phylogenetic relationships, genome mapping and genetic diversity analysis within buffalo populations worldwide.

First radiation hybrid map of the river buffalo X chromosome (BBUX) and comparison with BTAX

We report the first radiation hybrid map of the river buffalo X chromosome generated from a recently constructed river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel (BBURH5000). This map contains a total of 33 cattle-derived markers, including 10 genes, four ESTs and 19 microsatellites. The markers are distributed in two linkage groups: LG1 contains eight markers spanning 125.6 cR, and LG2 contains 25 markers spanning 366.3 cR. LG1 contains six markers in common with bovine sequence assembly BUILD 3.1. With the exception of BMS2152, the order of these markers on our BBUX map is shuffled when compared to the cow X chromosome (Bos taurus; BTAX). From LG2, two markers (AMELX and BL22) map to a more distal portion of BTAX compared to BBUX. In addition, two pairs of LG2 markers exhibit inversions compared to BTAX (ILSTS017 and ATRX; XBM38 and PPEF1). Alternatively, when compared to the most recent bovine RH map (Bov-Gen 3000rads), BL1098 and BMS2227 from LG1 as well as PLS3 and BMS1820 from LG2 showed inverted positions on the BBUX map. These discrepancies in buffalo and cattle maps may reflect evolutionary divergence of the chromosomes or mapping errors in one of the two species. Although the set of mapped markers does not cover the entire X chromosome, this map is a starting point for the construction of a high-resolution map, which is necessary for characterization of small rearrangements that might have occurred between the Bubalus bubalis and Bos taurus X chromosomes.

Mapping MHC Genes in River Buffalo

The major histocompatibility complex (MHC) contains a set of genes necessary for antigen presentation in the immune system. This gene dense and polymorphic region of the mammalian genome is of considerable interest due to the role of MHC genes in immune function and animal health. Previous cytogenetic studies have indicated that the MHC in river buffalo resides on the short arm of chromosome 2 (BBU2). A 5000-rad radiation hybrid mapping panel was recently generated to enable construction of a whole genome map of river buffalo. To this and, the aims of this project were to elucidate the general organization of the MHC on BBU2, and to compare gene order within this region to the MHC in cattle. PCR primers were selected from the bovine gene map and used with the BBURH(5000) panel to map a set of ten MHC class 11 genes in river buffalo. Analysis indicates that these genes fall into two linkage groups, consistent with organization of the MHC in cattle. This comparison of buffalo and bovine MHC gene order provides the first insight into the organization of the MHC on river buffalo chromosome 2.

A first generation whole genome RH map of the river buffalo with comparison to domestic cattle

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)