Genetic identification of four Malaysian mackerel species off Coast of Peninsular Malaysia based on molecular marker

Random Amplified Polymorphic DNA (RAPD) markers and cytochrome b (Cyt-b) gene sequences were utilized to fingerprint and construct phylogenetic relationships among four species of mackerel commonly found in the Straits of Malacca namely Rastrelliger kanagurta, R. brachysoma, Decapterus maruadsi and D. russelli. The UPGMA dendogram and genetic distance clearly showed that the individuals clustered into their own genus and species except for the Decapterus. These results were also supported by partial mtDNA cytochrome b gene sequences (279 bp) which found monotypic sequence for all Decapterus studied. Cytochrome b sequence phylogeny generated through Neighbor Joining (NJ) method was congruent with RAPD data. Results showed clear discrimination between both genera with average nucleotide divergence about 25.43%. This marker also demonstrated R. brachysoma and R. kanagurta as distinct species separated with average nucleotide divergence about 2.76%. However, based on BLAST analysis, this study indicated that the fish initially identified as D. maruadsi was actually D. russelli. The results highlighted the importance of genetic analysis for taxonomic validation, in addition to morphological traits.

L'oxygene au large de Grand Bassam (Cote d'Ivoire)

The present paper deals with the variations of the dissolved oxygen content off Grand Bassam (11 miles east of Abidjan, Côte d'Ivoire), during nearly five years (March 1966 to September 1970). Although we find in general the low oxygen values near the bottom, the dissolved oxygen content is at its absolute minimum during the upwelling. There is a good correlation between the Secchi depth and the depth of the well ventilated layer. About 10% of surface irradiance is found at the layer where the dissolved oxygen content equals 80% of the oxygen content found at surface.

Notes sur l'écologie de quelques taxons du zooplancton de Côte d'Ivoire. 1 - Ostracodes, Cladocères et Cirripèdes

Seasonal variations of abundance and vertical distribution over the shelf are investigated for Ostracoda, Cladocera and Cirripede larvae. The main characteristics of the environment are the periodical enrichments mainly caused by upwellings, secondly by the river floods. Ostracoda abundance variations approximately follow phytoplankton outburst. Breeding occurs all over the year. Their vertical distribution is correlated with a discontinuity layer. Diurnal migration, when it occurs in warm season consists in an upward movement during the night towards surface layers. The Ostracoda inhabit bottom layers during the day and migrate at night in intermediate and surface layers. For the main two species of Cladocera, Penilia avirostris and Evadne tergestina, abundance periods follow upwellings, especially during the main cool season. However, Cladocera can grow in low salinity but rich waters. On average Penilia inhabits more superficial waters in cold than in warm seasons. Cirripede nauplii and cypris are more abundant off rocky coasts. Their maxima are in the upwelling periods.

Estimations des potentiels de pêche des stocks démersaux ivoiriens par les modèles globaux. Effets de la prolifération du Baliste (Balistes capriscus)

Statistical data (1959-1977) of the trawling fishery off the continental shelf of Côte d'Ivoire has been fitted to the Fox (PRODFIT) global model. Owing to the proliferation of baliste (B. capriscus) since the years 1971-1972, data were divided into two groups. Maximum Sustainable Yield MSY: PMMC in the text), for the whole of commercial species in the continental shelf, decreased from 8800t to 5900t between the two periods; the difference represents balistes potentialities at bottom level. The model has also been fitted to data which concern Sciaenidae coastal community and Sparidae community which are parts by the 50 m isobathe. Deep layer (50-120m) MSY is at 2350t during the whole period of study. Until 1977, this potentiality was never reached, because of the low productivity of the Sparidae community.

Variabilité, circulation et chlorophylle dans la région du Dôme d'Angola en février-mars 1971

In February-March 1971 the hydrological conditions off Angola did not display the thermal dome mapped by Mazeika's averages (1967). Cold water cells observed are connected at the surface to a sinuous boundary between low-salinity coastal waters and high-salinity tropical oceanic waters. That boundary coincides rather regularly with an area where trades and SW winds alternate; photosynthesis growths rapidly in a thermoclinal layer that rises until 10 m of the surface but never outcrops. Below a poor and permanent homogeneous surface layer, chlorophyll concentrations show a distribution which is typical of divergence areas. Geostrophical and measured currents show off a transient process in horizontal and vertical movements, however the general curvature of the circulation is propitious to upwelling. Oxygen oversaturations of about 110%, suggest a moderate potential primary production which confirms slowness and alternation of movements. Also, the regular range of the various chemical and biological levels and moderate chlorophyll concentrations suggest an ecosystem where nutrients supply rapidly equilibrate phytoplankton consumption and not at all a 'phytoplankton bloom' area as that which exists in coastal upwelling. Values of Richardson's number show that instability becomes visible at the bottom of the euphotic layer. An evaluation of the vertical motion is inferred by the peculiar distribution and diurnal alternance of the winds shows that 'doming' structures may be sustained by local meteorological events.

The effect of organotin and copper sulfate on the late development and presettlement behavior of the hard clam Mercenaria mercenaria

The effect of organotin compounds and copper, commonly used as antifouling agent, were studied on Mercenaria mercernaria larvae. They were reared under usual hatchery conditions until they reached 190 um in diameter. The larvae were subjected to four compounds, tributylin chloride (TBT), monobutyltin chloride (MBT), trimethyltin chloride (TMT), cupric sulfate (CuSo4) plus control. Mortality was measured at 24, 48 h, and 96h. Behavioral and/or metamorphic changes were recorded in triplicate at 24-48 and 96 h. The appearance in swimming larvae of a functional foot was considered a sign of competence to set and was recorded as a "pediveliger". Swimming larvae were considered as larvae that have not yet reached their total development and they were recorded as "swimming". Larvae that did not show foot or swimming activity and were static but alive on the bottom were recorded as "bottom". TBT was found to completely inhibit swimming activity at sublethal concentrations throughout the period of observation. Copper and MBT inhibited swimming from 48 h, TMT did not inhibit swimming activity at any of the times recorded. The four compounds ranked in order of decreasing toxicity were TBT>TMT>CU>MBT.

A comparison between circle hook and J hook performance in the dolphinfish, yellowfish tuna, and wahoo troll fishery off the coast of North Carolina

We compared numbers of strikes, proportions of fish that hooked up after strikes, proportions of fish that stayed on hook (retained) after hook up, and numbers of fish caught between circle and J hooks rigged with dead natural fish bait (ballyhoo)and trolled for three oceanic predator species: dolphinfish (Coryphaena hippurus), yellowfin tuna (Thunnus albacares), and wahoo (Acanthocybium solandri). Interactions were compared between circle and J hooks fished on 75 trips by two user groups (charter and recreational fishermen). Hooks were affixed to three species-specific leader types most commonly fished in this region: monofilament (dolphinfish), fluorocarbon (tuna), and wire (wahoo). Numbers of fish caught per trip and three potential mechanisms that might inf luence numbers caught (i.e., number of strikes, proportion of fish hooked, and proportion retained) were modeled with generalized linear models that considered hook type, leader type, species, user (fishing) group, and wave height as main effects. Hook type was a main effect at the catch level; generally, more fish were caught on J hooks than on circle hooks. The effect of hook type on strike rates was equivocal. However, J hooks had a greater proportion of hook-ups than did circle hooks. Finally, the proportion of fish retained once hooked was generally equal between hook types. We found similar results when data from additional species were pooled as a “tuna” group and a “mackerel” group. We conclude that J hooks are more effective than circle hooks at the hook-up level and result in greater numbers of troll-caught dolphinfish, tunas

Variations in eastern North Pacific demersal fish biomass based on the U.S. west coast groundfish bottom trawl survey (2003–2010)

In response to declining biomass of Northeast Pacific groundfish in the late 1990s and to improve the scientific basis for management of the fishery, the Northwest Fisheries Science Center standardized and enhanced their annual bottom trawl survey in 2003. The survey was expanded to include the entire area along the U.S. west coast at depths of 55–1280 m. Coast-wide biomass and species richness significantly decreased during the first eight years (2003–10) of this fishery-independent survey. We observed an overall tendency toward declining biomass for 62 dominant taxa combined (fishery target and nontarget species) and four of seven subgroups (including cartilaginous fish, flatfishes, shelf rockfishes, and other shelf species), despite increasing or variable biomass trends in individual species. These decreases occurred during a period of reduced catch for groundfish along the shelf and upper slope regions relative to historical rates. We used information from multiple stock assessments to aggregate species into three groups: 1) with strong recruitment, 2) without strong recruitment in 1999, and 3) with unknown recruitment level. For each group, we evaluated whether declining biomass was primarily related to depletion (using year as a proxy) or environmental factors (i.e., variation in the Pacific Decadal Oscillation). According to Akaike’s information criterion, changes in aggregate biomass for species with strong recruitment were more closely related to year, whereas those with no strong recruitment were more closely related to climate. The significant decline in biomass for species without strong recruitment confirms that factors other than depletion of the exceptional 1999 year class may be responsible for the observed decrease in biomass along the U.S. west coast.

Comparison of habitat-based indices of abundance with fishery-independent biomass estimates from bottom trawl surveys

Rockfish species are notoriously difficult to sample with multispecies bottom trawl survey methods. Typically, biomass estimates have high coefficients of variation and can fluctuate outside the bounds of biological reality from year to year. This variation may be due in part to their patchy distribution related to very specific habitat preferences. We successfully modeled the distribution of five commercially important and abundant rockf ish species. A two-stage modeling method (modeling both presence-absence and abundance) and a collection of important habitat variables were used to predict bottom trawl survey catch per unit of effort. The resulting models explained between 22% and 66% of the variation in rockfish distribution. The models were largely driven by depth, local slope, bottom temperature, abundance of coral and sponge, and measures of water column productivity (i.e., phytoplankton and zooplankton). A year-effect in the models was back-transformed and used as an index of the time series of abundance. The abundance index trajectories of three of five species were similar to the existing estimates of their biomass. In the majority of cases the habitat-based indices exhibited less interannual variability and similar precision when compared with stratified survey-based biomass estimates. These indices may provide for stock assessment models a more stable alternative to current biomass estimates produced by the multispecies bottom trawl survey in the Gulf of Alaska.

Comparative feeding ecology of two elasmobranch species, Squalus blainville and Scyliorhinus canicula, off the coast of Portugal

The small-spotted catshark (Scyliorhinus canicula) (Linnaeus, 1758) and the longnose spurdog (Squalus blainville) (Risso, 1826) are two species occurring in the European and western African continental shelves with a wide geographical distribution. In this study, the diet of S. blainville and S. canicula off the Portuguese western Atlantic coast was investigated in 2006 by collecting monthly samples of these two species from local fishing vessels. In the stomachs of both species, crustaceans and teleosts were the dominant prey items, and molluscs, polychaetes, echinoderms, and sipunculids were found in lower abundance. In S. canicula, urochordate and chondrichthyan species were also observed in stomachs and were classified as accidental prey items. Scyliorhinus canicula consumed a broader group of prey items than did S. blainville. A significant diet overlap was observed, despite both species occupying different depth ranges over the continental shelf. Scyliorhinus canicula exhibited a consistency in diet composition among seasons, sexes, and maturity stages. Nonetheless, for both adults and juveniles, an increase in relative abundance of teleosts in the diet was observed in the spring and summer. This study provides evidence of the importance of S. canicula and S. blainville as benthic and pelagic predators along the western Atlantic coast.

Food habits of Steller sea lions (Eumetopias jubatus) off Oregon and northern California, 1986–2007

We described the diet of the eastern stock of Steller sea lions (Eumetopias jubatus) from 1416 scat samples collected from five sites in Oregon and northern California from 1986 through 2007. A total of 47 prey types from 30 families were identified. The most common prey was Pacific hake (Merluccius productus), followed by salmonids (Oncorhynchus spp.), skates (Rajidae), Pacific lamprey (Lampetra tridentata), herrings (Clupeidae), rockfish (Sebastes spp.), and northern anchovy (Engraulis mordax). Steller sea lion diet composition varied seasonally, annually, and spatially. Hake and salmonids were the most commonly identified prey in scats collected during the summer (breeding season), whereas hake and skate were most common in the nonbreeding season. Continued research on Steller sea lion diet and foraging behavior in the southern extent of their range is necessary to address issues such as climate change, interaction with competing California sea lions, and predation impacts on valuable or sensitive fish stocks.

Ocean distribution of the American shad (Alosa sapidissima) along the Pacific coast of North America

We examined the incidental catches of American shad (Alosa sapidissima) taken during research cruises and in commercial and recreational landings along the Pacific coast of North America during over 30 years of sampling. Shad, an introduced species, was mainly found over the shallow continental shelf, and largest catches and highest frequency of occurrences were found north of central Oregon, along the coasts of Washington and Vancouver Island, and in California around San Francisco Bay. Migrations to the north off Washington and Vancouver were seen during spring to fall, but we found no evidence for large-scale seasonal migrations to the south during the fall or winter. The average weight of shad increased in deeper water. Sizes were also larger in early years of the study. Most were caught over a wide range of sea surface temperatures (11–17°C) and bottom temperatures (6.4–8.0°C). Abundance of shad on the continental shelf north of 44°N was highly correlated with counts of shad at Bonneville Dam on the Columbia River in the same year. Counts were negatively related to average weights and also negatively correlated with the survival of hatchery coho salmon (Oncorhynchus kisutch), indicating that survival of shad is favored by warm ocean conditions. Examining the catch during research cruises and commercial and recreational landings, we concluded that American shad along the Pacific coast have adapted to the prevailing environmental conditions and undertake only moderate seasonal migrations compared with the long seasonal migrations of shad along the Atlantic coast of North America. We suggest that the large spawning populations in the Columbia River and San Francisco Bay areas explain most of the distributional features along the Pacific coast.

Comparison of life history parameters for landed and discarded fish captured off the southeastern United States

Commercial fisheries that are managed with minimum size limits protect small fish of all ages and may affect size-selective mortality by the differential removal of fast growing fish. This differential removal may decrease the average size at age, maturation, or sexual transition of the exploited population. When fishery-independent data are not available, a comparison of life history parameters of landed with those of discarded fish (by regulation) will indicate if differential mortality is occurring with the capture of young but large fish (fast growing phenotypes). Indications of this differential size-selective mortality would include the following: the discarded portion of the target fish would have similar age ranges but smaller sizes at age, maturation, and sexual transition as that of landed fish. We examined three species with minimum size limits but different exploitation histories. The known heavily exploited species (Rhomboplites aurorubens [vermilion snapper] and Pagrus pagrus [red porgy]) show signs of this differential mortality. Their landed catch includes many young, large fish, whereas discarded fish had a similar age range and mean ages but smaller sizes at age than the landed fish. The unknown exploited species, Mycteroperca phenax (scamp), showed no signs of differential mortality due to size-selective fishing. Landed catch consisted of old, large fish and discarded scamp had little overlap in age ranges, had significantly different mean ages, and only small differences in size at age when compared to comparable data for landed fish.

Distribution patterns of tidepool fishes on a tropical flat reef

Rockpools on a tropical f lat reef off the southeastern coast of Brazil were sampled to determine the influence of pool morphometry and water characteristics on fish community structure. The pool closest to the inner fringe of the reef had lower salinity and higher temperature due to inflow of groundwater. The other pools varied only with respect to their morphometric characteristics, algal cover, and bottom composition. Species with a strong affinity for estuarine- like waters characterized the pool closest to the beach and distinguished its fish community from that of the other pools. Instead of being strongly structured by the physicochemical setting and position in the reef, fish communities of the other pools were determined by behavioral preferences and intra- and interspecific interactions. Differences in community structure were related to pool size (the larger sizes permitting the permanency of schooling species), to algal cover (which allowed camouflage for large predatory species), to bottom composition (which provided substrate for turf flora available to territorial herbivores), and to ecological effects (e.g., competition, territoriality, and predation). Although distribution patterns of tidepool fishes have previously been related to the availability of niches, independent of pool position in the reef, our results show synergistic interactions between water properties, presence or absence of niches, and ecological relationships in structuring tidepool fish communities.