Prediction and probability of neonatal outcome in isolated congenital diaphragmatic hernia using multiple ultrasound parameters

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Comparison between univariate and bivariate geostatistical models for estimating catch per unit of effort (cpue): A simulation study

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements

We report a method for studying global DNA methylation based on using bisulfite treatment of DNA and simultaneous PCR of multiple DNA repetitive elements, such as Alu elements and long interspersed nucleotide elements (LINE). The PCR product, which represents a pool of approximately 15000 genomic loci, could be used for direct sequencing, selective restriction digestion or pyrosequencing, in order to quantitate DNA methylation. By restriction digestion or pyrosequencing, the assay was reproducible with a standard deviation of only 2% between assays. Using this method we found that almost two-thirds of the CpG methylation sites in Alu elements are mutated, but of the remaining methylation target sites, 87% were methylated. Due to the heavy methylation of repetitive elements, this assay was especially useful in detecting decreases in DNA methylation, and this assay was validated by examining cell lines treated with the methylation inhibitor 5-aza-2'deoxycytidine (DAC), where we found a 1-16% decrease in Alu element and 18-60% LINE methylation within 3 days of treatment. This method can be used as a surrogate marker of genome-wide methylation changes. In addition, it is less labor intensive and requires less DNA than previous methods of assessing global DNA methylation.

Estimating genomic instability mediated by Alu retroelements in breast cancer

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

COMPARISON OF 3 TECHNIQUES FOR ESTIMATING PERIPHYTON ABUNDANCE IN BEDROCK STREAMS

Three procedures (line transect, point intercept and quadrat) for estimating abundance of macroscopic components of periphyton (macroalgae and bryophytes) were compared in two bedrock streams from southeastern Brazil on the basis of frequency and percent cover. In addition, two quadrat sizes (25 and 50 cm) were tested for best size. Samplings were all made within a 10 m length stream reach. Differences were tested by means of analysis of variance, ANOVA - one way, Student's t test and Chi-square test, whereas associations among them were evaluated by Pearson's r correlation coefficient. Values of frequency and percent cover varied among the different techniques and periphyton species in both sites but ANOVA, t and Chi-square tests revealed no significant difference (p<0.05) for percent cover in the two sites. No consistent pattern was observed for the different procedures between sites. Values for quadrat (25 and 50 cm) percent cover were positively correlated among distinct periphyton species. Significant differences for frequency were found in only one site. Quadrats of 50 cm produced the highest frequency values, whereas point intercept the lowest in both sites. In terms of spatial variation within the stream segment, significant differences were generally observed among all procedures, except between quadrats. As a rule, highly significant correlations for percent cover were found among the different techniques along the stream reach. The strongest relationships were found for quadrats with the other procedures, whereas the weakest between Line and point. Pros and cons of the three techniques are fully discussed.

Estimating the aboveground biomass and wood volume of savanna woodlands in Brazil's Pantanal wetlands based on allometric correlations

The quantity and distribution of vegetal biomass are important aspects to consider in ecosystem studies. However, little information is available about Brazil's Pantanal woodland savannas. This work involved the development of regression equations of the aerial biomass and wood volume of native tree species in a region of woodland savanna on Rio Negro farm in the Pantanal of Nhecolandia, Brazil. Samples were taken from 10 trees of each of five species: Protium heptaphyllum (Aub1.) Marchand, Magonia pubescens A. St.-Hil., Diptychandra aurantiaca Tul., Terminalia argentea Mart. and Zucc. and Licania minutiflora (Sagot) Fritsch and from a miscellaneous group of I I different species. Linear and nonlinear regression analyses were developed relating the diameter at breast height to the dry weight of wood, branches and leaves, wood volume and total aerial biomass. All the regressions showed a significance of P < 0.05 and an R-2 close to or above 0.8. The biomass curve predicted by linear regression analysis of the studied species was similar to the nonlinear regression, with the exception of L. minutiflora and the miscellaneous group. The breast height diameter proved a good choice for estimating biomass and wood volume. The estimated wood volume and biomass of the Pantanal woodland savanna is crucial information for understanding the carbon cycle and for ensuring the region's conservation and sustainable use. (c) 2006 Elsevier B.V. All rights reserved.

DECOMPOSITION RATES OF SPENT FUNGAL REFUSE OF ATTA-SEXDENS (HYMENOPTERA, FORMICIDAE) AND IMPLICATIONS FOR ESTIMATING FORAGE INTAKE BY LEAF-CUTTING ANTS

Using simulated ceramic refuse chambers, field decomposition studies were performed on the spent fungal refuse of the lead-cutting ant Atta sexdens rubropilosa. Refuse half life was estimated at 40 days, with complete decomposition at 100 days. These results suggest that the conversion-factor method used to estimate forage input into leaf-cutting ant colonies must be corrected for decomposition, or serious estimation errors will occur.

Aging reduces complexity of heart rate variability assessed by conditional entropy and symbolic analysis

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estimating coancestry within open-pollinated progenies of a dioecious species: the case study of Myracrodruon urundeuva

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Estimating the thermoneutral zone for broiler breeders using behavioral analysis

Knowledge about bird's heat stress is extensively discussed in the literature. From behavior data collected during the summer of 2000/2001 in an open-sided reduced scale model of a poultry barn, this study estimated the thermoneutral zone for female broiler breeders. The birds were electronically identified and the frequency of use of passage, indicating movement, and drinker, indicating thirst, where the antennas were placed, was recorded. Environmental data such as dry and wet bulb temperature were collected in the geometric center of the model and continuously registered by a datalogger. From the statistical analysis, it was possible to predict a real-time-based zone where the birds showed coherent behavior towards the use of the drinker and movement in the passage. (c) 2007 Elsevier B.V. All rights reserved.

Model approach for estimating potato pesticide bioconcentration factor

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Optical transition probabilities and compositional dependence of Judd-Ofelt parameters of Er3+ ions in fluoroindate glass

Fluoroindate glasses containing 1, 2, 3, and 4 mol% ErF3 were prepared in a dry box under an argon atmosphere. Absorption spectra of these glasses at room temperature were obtained. The Judd-Ofelt parameters Ωλ (λ = 2, 4, 6) for f-f transitions of Er3+ ions as well as transition probabilities, branching ratios, radiative lifetimes, and peak cross-sections for stimulated emission of each band were determined. The concentration effect on the intensities is analyzed. The optical properties of the fluoroindate glasses doped with Er3+ ions are compared with those of other glasses described in the literature. © 1995.

Conditional reasoning: A key to assessing computer-based knowledge-building communication processes

This article describes a methodological approach to conditional reasoning in online asynchronous learning environments such as Virtual-U VGroups, developed by SFU, BC, Canada, consistent with the notion of meaning implication: If part of a meaning C is embedded in B and a part of a meaning B is embedded in A, then A implies C in terms of meaning [Piaget 91]. A new transcript analysis technique was developed to assess the flows of conditional meaning implications and to identify the occurrence of hypotheses and connections among them in two human science graduate mixed-mode online courses offered in the summer/spring session of 1997 by SFU. Flows of conditional meaning implications were confronted with Virtual-U VGroups threads and results of the two courses were compared. Findings suggest that Virtual-U VGroups is a knowledge-building environment although the tree-like Virtual-U VGroups threads should be transformed into neuronal-like threads. Findings also suggest that formulating hypotheses together triggers a collaboratively problem-solving process that scaffolds knowledge-building in asynchronous learning environments: A pedagogical technique and an built-in tool for formulating hypotheses together are proposed. © Springer Pub. Co.