The binding and catalytic properties of lysozyme

The binding and catalytic properties of hen's egg white lysozyme have been studied by a variety of techniques. These studies show that the enzyme has three contiguous binding subsites, A, B, and C. The application of nuclear magnetic resonance (NMR) spectroscopy to probe the binding environment of several saccharides to lysozyme has demonstrated that the reducing end sugar rings of chitotriose, chitobiose and the β-form of N-acetylglucosamine all bind in subsite C. The central sugar ring of chitotriose and the sugar ring at the nonreducing end of chitobiose were found to bind in subsite B, while the nonreducing end sugar residue of chitotriose occupied subsite A. The dynamics of the binding process has also been investigated by NMR. The formation rate constant of chitobiose--and chitotriose-enzyme complexes were found to be about 4 X 10^-6 M^-1 sec^-1 with small activation energies.

The stereochemical path of the lysozyme catalyzed hydrolysis of glycosidic bonds has been shown to proceed with at least 99.7% retention of configuration at C-1 of the sugar. The lysozyme catalyzed hydrolysis of glucosidic bonds has been shown to be largely carbonium ion in character by virtue of the α-deuterium kinetic isotope effect (k_H/k_D = 1.11) observed for the reaction. It is probable that the mechanism of action of the enzyme involves a carbonium ion intermediate which is stereospecifically quenched by solvent. However, acetamido group participation cannot be ruled out for natural substrates.

Optimización de la cantidad y localización de Pt en catalizadores Pt/HBeta para hidrocraqueo de poliestireno en disolución

El objetivo general de este trabajo es avanzar en la optimización de catalizadores de platino para el hidrocraqueo de poliestireno en fase líquida en una sola etapa, hacia la obtención de combustibles líquidos, dentro de las diferentes alternativas para la valorización de residuos plásticos. Mediante este proceso, se pretende minimizar la cantidad de residuos plásticos que se destinan a vertedero, en el marco de la Directiva 2008/98/CE, como solución efectiva y eco-eficiente a su inevitable generación. En estudios previos, se ha determinado que catalizadores de platino soportados sobre zeolita HBeta resultaban adecuados para esta aplicación. Por otro lado, un profundo estudio de las distintas etapas de transferencia de materia, combinando resultados experimentales con correlaciones empíricas, ha permitido definir condiciones experimentales en las que se puede trabajar en régimen cinético, lo que resulta fundamental para trabajar en el diseño de catalizadores. Partiendo de estos resultados, los objetivos específicos del trabajo se han enfocado en:  Minimizar la cantidad de platino a emplear en un catalizador de Pt/HBeta para esta aplicación, teniendo en cuenta que se trata de un metal noble y que, por lo tanto, encarece el precio de los catalizadores de forma muy importante. Se trata, en este caso, de mantener adecuados niveles de actividad y, sobre todo, selectividad hacia los productos deseados. La selectividad, desde el punto de vista del platino, se relaciona principalmente, para el caso del poliestireno, con la presencia de productos de hidrogenación del monómero.  Optimizar el método de incorporación del platino al catalizador. El planteamiento, en este caso, es que, dado el elevado tamaño de las moléculas de polímero, la reacción de hidrocraqueo tendrá lugar, casi exclusivamente, sobre la superficie externa del catalizador, y la hidrogenación del monómero puede alcanzar una capa algo más profunda. En cualquier caso, parece evidente que el platino depositado en las capas más profundas del catalizador permanecerá desaprovechado, y sería interesante obtener una distribución de tipo “egg-shell”.

Fecundity estimates for Maryland Striped Bass

Contemporary striped bass population modeling efforts on coastal stocks point to a reduced population fecundity in Chesapeake Bay being partially responsible for declining reproduction (Anonymous 1985; Boreman and Goodyear 1984). Fecundity values used in these models were based on earlier work by jackson and tiller (1952), lewis and Bonner (1966), Hollis (1967) and Holland and Yelverton (1973). An important feature to the Boreman and Goodyear (1985) model (FSIM) is an accurate determination of the fecundity weight regression equation used to determine the rate of egg deposition over time. Egg deposition models in turn can be used to determine how reproductive potential is changing over time in response to various management actions, i.e. reducing fishing mortality rates. thus it is imperative to follow population stock structure in the Bay system and to develop a contemporary fecundity relationship for striped bass. This report deals with the gonadal material collected in 1986 and 1987 from a coordinated Maryland field program. Samples were obtained from drift gill net collections during the spawning season from four localities: Potomac Estuary, Upper Bay, Chesapeake and Delaware Canal, and the Choptank Estuary (Figure 1).

A review of IATTC research on the early life history and reproductive biology of scombrids conducted at the Achotines Laboratory from 1985 to 2005

English: For nearly a century, fisheries scientists have studied marine fish stocks in an effort to understand how the abundances of fish populations are determined. During the early lives of marine fishes, survival is variable, and the numbers of individuals surviving to transitional stages or recruitment are difficult to predict. The egg, larval, and juvenile stages of marine fishes are characterized by high rates of mortality and growth. Most marine fishes, particularly pelagic species, are highly fecund, produce small eggs and larvae, and feed and grow in complex aquatic ecosystems. The identification of environmental or biological factors that are most important in controlling survival during the early life stages of marine fishes is a potentially powerful tool in stock assessment. Because vital rates (mortality and growth) during the early life stages of marine fishes are high and variable, small changes in those rates can have profound effects on the properties of survivors and recruitment potential (Houde 1989). Understanding and predicting the factors that most strongly influence pre-recruit survival are key goals of fisheries research programs. Spanish: Desde hace casi un siglo, los científicos pesqueros han estudiado las poblaciones de peces marinos en un intento por entender cómo se determina la abundancia de las mismas. Durante la vida temprana de los peces marinos, la supervivencia es variable, y el número de individuos que sobrevive hasta las etapas transicionales o el reclutamiento es difícil de predecir. Las etapas de huevo, larval, y juvenil de los peces marinos son caracterizadas por tasas altas de mortalidad y crecimiento. La mayoría de los peces marinos, particularmente las especies pelágicas, son muy fecundos, producen huevos y larvas pequeños, y se alimentan y crecen en ecosistemas acuáticos complejos. La identificación los factores ambientales o biológicos más importantes en el control de la supervivencia durante las etapas tempranas de vida de los peces marinos es una herramienta potencialmente potente en la evaluación de las poblaciones. Ya que las tasas vitales (mortalidad y crecimiento) durante las etapas tempranas de vida de los peces marinos son altas y variables, cambios pequeños en esas tasas pueden ejercer efectos importantes sobre las propiedades de los supervivientes y el potencial de reclutamiento (Houde 1989). Comprender y predecir los factores que más afectan la supervivencia antes del reclutamiento son objetivos clave de los programas de investigación pesquera.

A ecologia em miniatura: o menor tetrápodo do Brasil, Brachycephalus didactylus (Izecksohn, 1971) (Anura: Brachycephalidae) em uma área de Mata Atlântica no Espírito Santo, Sudeste do Brasil

O processo de miniaturização em anuros pode ter implicações ecológicas como, por exemplo, a redução no tamanho da ninhada produzida pelas fêmeas, o aumento do tamanho relativo dos ovos e o desenvolvimento direto. O consequente reduzido tamanho da boca tende também a constituir um fator limitante no consumo de presas por estes pequenos anuros, tornando acessível ao consumo apenas uma gama restrita de presas diminutas. Assim, estudamos parâmetros da ecologia de uma população do anuro Brachycephalus didactylus, em uma área de Mata Atlântica no sul do Espírito Santo, objetivando ampliar o conhecimento sobre tais parâmetros que compreenderam o dimorfismo sexual, algumas características da reprodução, a dieta e a relação com a disponibilidade de atrópodos no folhiço e uso do microhabitat. A amostragem dos dados ocorreu durante um ano, nas estações seca e chuvosa. Brachycephalus didactylus possuiu dimorfismo sexual, com fêmeas sendo maiores do que os machos. O maior tamanho atingido pelas fêmeas provavelmente resulta da seleção intrassexual atuando nas fêmeas para favorecer um maior investimento na massa dos ovos, já que a espécie possui um tamanho de ninhada consideravelmente reduzido (um a dois ovos). A dieta de B. didactylus foi composta por um espectro relativamente amplo de presas (17 itens), tendo elevadas proporções de pequenas presas como Acari e Collembola. O consumo de Formicidae (formigas) foi evitado por B. didactylus, apesar de essa presa ser a mais abundante no folhiço, o que categorizou o anuro como um "especialista em não comer formigas" ("non-ant specialist", sensu Toft 1980a). O reduzido tamanho da boca nas fêmeas de B. didactylus limitou o tamanho máximo de presas passíveis de serem ingeridas pelo anuro e restringindo-o ao consumo de presas pequenas, com maiores indivíduos consumindo um número maior de presas. Por fim, B. didactylus apresentou uma utilização essencialmente horizontal do hábitat, sendo mais frequentemente encontrado sobre o folhiço no chão da mata.

River Lune salmon action plan March 1997. Draft Copy.

The River Lune was at one time one of the best salmon fisheries in England and Wales with very high catches to both rods and netsmen. During the 1960's, the stock was decimated by the disease Ulcerative Dermal Necrosis which caused a dramatic reduction in catches. Catches have not recovered to pre-disease levels. The target egg deposition rate for the River Lune system which should produce the maximum number of surplus fish returning to the system has been determined at 13.8 million eggs. This will require 4,779 adult salmon to survive to successfully spawn. Under current rates of exploitation, the target egg deposition will occur at a declared rod catch of 1,974 salmon and a net catch of 2,627 salmon. Two automatic fish counters are in operation on the river system. Data from these suggest that, within the measures of compliance, the river has met it's target egg deposition for the last 3 years.

Étude du crabe rouge profond Geryon quinquedens en Côte d'Ivoire. 2 - Éléments de biologie et d'écologie avec références aux résultats obtenus au Congo

Geryon quinquedens is present along the West African continental slope at depths from 300 to 1000 m, on silt-clay sediments. Geryon is a cold and rather poorly oxygenated water loving species. It is easily caught by traps as it is a scavenger and predatory crustacea. In a given area its distribution does not appear to be homogeneous: for example, densities of red crabs are higher in the eastern and western region of Côte d'Ivoire than in the central zone. Similar observations can be made off Congo, Angola and United States. It can be assumed that there is a relation between the abundance of Geryon and the productivity level of the area. Geographical variations of sex ratio are suspected to be correlated with the density distribution. Males and females have not the same bathymetric distribution: females are only common in the shallower waters (300-500 m) whereas males are present in the whole biotope. Seasonal migrations occur down and up the slope in both the sexes and are certainly related to the reproductive biology. Knowledge of the reproductive biology is also necessary to understand fishing-trap catch rate: egg maturation extends over several months and ovigerous females are exceptionally caught by traps; males also are less available during the same period (March to August) when migrations are less important; in this period, mean size increases and probably this happens at the end of a moult. From September to February the catch-rates increase. Growth is slow compared with other littoral Guinean Crustacea (Peneides). Females become sexually mature at a size of 80 mm (carapace width): modification in the allometric relations of abdomen and carapace are then conspicuous.

Salmon action plan. River Ribble - June 2000

In February 1996 A Strategy for the Management of Salmon in England and Wales was launched by the National Rivers Authority. The strategy concentrates on four main objectives for the management of salmon fisheries in England and Wales: (i) Optimise the number of salmon returning to home water fisheries, (ii) Maintain and improve the fitness and diversity of salmon stocks, (iii) Optimise the total economic value of surplus stocks, (iv) Ensure necessary costs are met by beneficiaries. These four objectives will be addressed through local Salmon Action Plans (SAPs) which will be produced for each of the principle salmon rivers in England and Wales by the year 2001. A consultation report was produced for the River Ribble and released publicly in October 1999. This document determined an egg deposition figure of 8.5 million eggs for the Ribble, that would allow maximum gain from the net and rod fisheries; raised a number of issues which are thought to currently limit salmon production; identified actions which may be undertaken by the Environment Agency and other bodies to improve stocks. This action plan re-addresses the issues raised in the consultation document, taking into account the comments received, and also identifies areas of possible improvement in data gathering that would allow more accurate estimation of the spawning target and compliance in future years. The progress of this plan will be monitored and reported annually.

Concepts of spawning targets

This report discusses the concepts of spawning targets. Spawning target setting is based on the fact that the number of smolts produced by any given river is constrained by habitat availability. This means smolt numbers depend on spawner numbers up to a point, but thereafter smolt production reaches a ceiling. It has been shown, in some rivers at least, that the relationship between egg deposition and smolt production may approximately be described by a mathematical equation. The equation will vary between rivers and there is uncertainty over its exact form. The concept of Maximum Gain (MG) is explained and its application in fisheries management discussed. The author also critically examines the concept of Density Independent Mortality (DIM).

1994 annual report on fisheries in the North west incorporating the annual summary of fishery statistics.

This report provides national and regional developments, statistics on fisheries finance, including income and expenditure, salmon and sea trout catches, including rod and line, commercial catches, and angler log book returns, monitoring and special projects, including salmon microtagging, salmon egg survival in Swanside Beck, and fish stock assessments, one with hydroacoustics, and one of surveys of different areas in Cumbria. The appendix includes a summary of fish statistics for 1994.

River Wyre salmon action plan December 2003

In 1996 a Strategy for the Management of Salmon in England and Wales was launched by the National Rivers Authority setting out objectives for the management of Salmon fisheries. These objectives are to be met through local Salmon Action Plans which are to be produced for each of the 68 principal salmon rivers in England and Wales by December 2003. A consultation document was produced for the river Wyre and released publicly during October 2003. This document: • Determined an egg deposition figure of 1.27 million eggs which would allow maximum gain from the fisheries • Raised a number of issues which are though to limit existing salmon production. • Identified actions which may be undertaken by the Environment Agency and other bodies to improved stocks. The document looks at the issues in the consultation document and also highlights some important changes to historic egg deposition rates following further analysis of the data. Some of the major issues addressed in the plan are: • Severe low flows on specific tributaries • Reduced juvenile production caused by insufficient habitat. • Changes in flow regime resulting in the wash out of gravels and redds. • The impact of man made structures preventing access to suitable spawning areas, and preventing the downstream distribution of spawning gravels.

Prediction and confirmation of seasonal migration of Pacific sardine (Sardinops sagax) in the California Current Ecosystem

During the last century, the population of Pacific sardine (Sardinops sagax) in the California Current Ecosystem has exhibited large fluctuations in abundance and migration behavior. From approximately 1900 to 1940, the abundance of sardine reached 3.6 million metric tons and the “northern stock” migrated from offshore of California in the spring to the coastal areas near Oregon, Washington, and Vancouver Island in the summer. In the 1940s, the sardine stock collapsed and the few remaining sardine schools concentrated in the coastal region off southern California, year-round, for the next 50 years. The stock gradually recovered in the late 1980s and resumed its seasonal migration between regions off southern California and Canada. Recently, a model was developed which predicts the potential habitat for the northern stock of Pacific sardine and its seasonal dynamics. The habitat predictions were successfully validated using data from sardine surveys using the daily egg production method; scientific trawl surveys off the Columbia River mouth; and commercial sardine landings off Oregon, Washington, and Vancouver Island. Here, the predictions of the potential habitat and seasonal migration of the northern stock of sardine are validated using data from “acoustic–trawl” surveys of the entire west coast of the United States during the spring and summer of 2008. The estimates of sardine biomass and lengths from the two surveys are not significantly different between spring and summer, indicating that they are representative of the entire stock. The results also confirm that the model of potential sardine habitat can be used to optimally apply survey effort and thus minimize random and systematic sampling error in the biomass estimates. Furthermore, the acoustic–trawl survey data are useful to estimate concurrently the distributions and abundances of other pelagic fishes.

Life-stage recruitment models for Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) on Georges Bank

Ichthyoplankton surveys have been used to provide an independent estimate of adult spawning biomass of commercially exploited species and to further our understanding of the recruitment processes in the early life stages. However, predicting recruitment has been difficult because of the complex interaction of physical and biological processes operating at different spatial and temporal scales that can occur at the different life stages. A model of first-year life-stage recruitment was applied to Georges Bank Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) stocks over the years 1977–2004 by using environmental and densitydependent relationships. The best lifestage mortality relationships for eggs, larvae, pelagic juveniles, and demersal juveniles were first determined by hindcasting recruitment estimates based on egg and larval abundance and mortality rates derived from two intensive sampling periods, 1977–87 and 1995–99. A wind-driven egg mortality relationship was used to estimate losses due to transport off the bank, and a wind-stress larval mortality relationship was derived from feeding and survival studies. A simple metric for the density-dependent effects of Atlantic cod was used for both Atlantic cod and haddock. These life stage proxies were then applied to the virtual population analysis (VPA) derived annual egg abundances to predict age-1 recruitment. Best models were determined from the correlation of predicted and VPA-derived age-1 abundance. The larval stage was the most quantifiable of any stage from surveys, whereas abundance estimates of the demersal juvenile stage were not available because of undersampling. Attempts to forecast recruitment from spawning stock biomass or egg abundance, however, will always be poor because of variable egg survival.

The effects of temperature on hatching and survival of northern rock sole larvae (Lepidopsetta polyxystra)

Northern rock sole (Lepidopsetta polyxystra) is a commercially important flatfish in Alaska and was recently classified as a distinct species from southern rock sole (L. bilineata). Taxonomic and vital rate data for northern rock sole are still not fully described, notably at early egg and larval stages. In this study, we provide new taxonomic descriptions of late-stage eggs and newly hatched larvae, as well as temperature-response models of hatching (timing, duration, success), and larval size-at-hatch and posthatch survival at four temperatures (2°, 5°, 9°, and 12°C). Time-to-first-hatch, hatch cycle duration, and overall hatching success showed a negative relationship with temperature. Early hatching larvae within each temperature treatment were smaller and had larger yolk sacs, but larvae incubated at higher temperatures (9° and 12°C) had the largest yolk reserves overall. Despite having smaller yolks, size-at-hatch and the maximum size achieved during the hatching cycle was highest for larvae reared at cold temperatures (2° and 5°C), indicating that endogenous reserves are more efficiently used for growth at these temperatures. In addition, larvae reared at high temperatures died more rapidly in the absence of food despite having more yolk reserves than cold-incubated larvae. Overall, northern rock sole eggs and larvae display early life history traits consistent with coldwater adaptation for winter spawning in the North Pacific.

Stage-specific vertical distribution of Alaska plaice (Pleuronectes quadrituberculatus) eggs in the eastern Bering Sea

The stage-specific distribution of Alaska plaice (Pleuronectes quadrituberculatus) eggs in the southeastern Bering Sea was examined with collections made in mid-May in 2002, 2003, 2005, and 2006. Eggs in the early stages of development were found primarily offshore of the 40-m isobath. Eggs in the middle and late stages of development were found inshore and offshore of the 40-m isobath. There was some evidence that early-stage eggs occur deeper in the water column than late-stage eggs, although year-to-year variability in that trend was observed. Most eggs were in the later stages of development; therefore the majority of spawning is estimated to have occurred a few weeks before collection—probably April—and may be highly synchronized among local spawning areas. Results indicate that sampling with continuous underway fish egg collectors(CUFES) should be supplemented with sampling of the entire water column to ensure adequate samples of all egg stages of Alaska plaice. Data presented offer new information on the stage-dependent horizontal and vertical distribution of Alaska plaice eggs in the Bering Sea and provide further evidence that the early life history stages of this species are vulnerable to near-surface variations in hydrographical conditions and climate forcing.