Nematode absolute densities and genus counts from four stations near the Antarctic Peninsula, collected with a multicorer device during POLARSTERN cruise ANT-XXIX/3 in January-March 2013

Marine free-living nematode communities were studied at similar depths (~500m) at two sides of the Antarctic Peninsula, characterised by different environmental and oceanographic conditions. At the Weddell Sea side, benthic communities are influenced by cold deep-water formation and seasonal sea-ice conditions, whereas the Drake Passage side experiences milder oceanic conditions and strong dynamics of the Antarctic Circumpolar Current. Surface primary productivity contrasted with observed benthic pigment patterns and varied according to the area studied: chlorophyll a concentrations (as a proxy for primary production) were high in the Weddell Sea sediments, but low in the surface waters above; this pattern was reversed in the Drake Passage. Differences between areas were largely mirrored by the nematode communities: nematode densities peaked in Weddell stations and showed deeper vertical occurrence in the sediment, associated with deeper penetration of chlorophyll a. Generic composition did not differ markedly between both areas, but rather showed distinct community shifts with depth in the sediment.

Meiofaunal abundance, biomass, taxon richness and indices of nematode diversity of samples from the Santa Maria di Leuca Bank (southern Adriatic margin)

Deep-water coral ecosystems are hot spots of biodiversity and provide habitats and refuges for several deep-sea species. However, their role in shaping the biodiversity of the surrounding open slopes is still poorly known. We investigated how meiofaunal biodiversity varies with and is related to the occurrence of deep-water living scleractinian corals and coral rubble in two deep-sea areas (the Rockall Bank, northeastern Atlantic) and the Santa Maria di Leuca (central Mediterranean). In both areas, replicated sampling on alive and dead coral areas and from the adjacent slope sediments without corals (at the same and increasing depths) allowed us to demonstrate that sediments surrounding the living corals and coral rubble were characterised by higher meiofaunal biodiversity (as number of higher taxa, and nematode species richness) than the slope sediments. Despite the soft sediments surrounding the living coral having a higher nutritional value than those not associated with corals, with the opposite seen for coral rubble, the presence of both alive and dead corals had a significant effect on nematode assemblages. Our data suggest that, due particularly to the effects on habitat heterogeneity/complexity, both living coral and coral rubble promoted higher biodiversity levels than in surrounding slope sediments. We conclude that the protection of deep-water corals can be crucial to preserve the biodiversity of surrounding open slopes, and that the protection of dead corals, a so-far almost neglected habitat in terms of biological conservation, can further contribute to the maintenance of a high deep-sea biodiversity along continental margins.

Genome-wide association and genome partitioning reveal novel genomic regions underlying variation in gastrointestinal nematode burden in a wild bird

Acknowledgements This study was funded by a BBSRC studentship (MA Wenzel) and NERC grants NE/H00775X/1 and NE/D000602/1 (SB Piertney). The authors are grateful to Fiona Leckie, Andrew MacColl, Jesús Martínez-Padilla, François Mougeot, Steve Redpath, Pablo Vergara† and Lucy M.I. Webster for samples; Keliya Bai, Daisy Brickhill, Edward Graham, Alyson Little, Daniel Mifsud, Lizzie Molyneux and Mario Röder for fieldwork assistance; Gillian Murray-Dickson and Laura Watt for laboratory assistance; Heather Ritchie for helpful comments on manuscript drafts; and all estate owners, factors and keepers for access to field sites, most particularly Stuart Young and Derek Calder (Edinglassie), Simon Blackett, Jim Davidson and Liam Donald (Invercauld and Glas Choille), Richard Cooke and Fred Taylor† (Invermark) and T. Helps (Catterick).

Soil water dynamics and availability for citrus and peanut along a hillslope at the Sunjia Red Soil Critical Zone Observatory (CZO)

Acknowledgments This work was granted by the China-UK jointed Red Soil Critical Zone project from National Natural Science Foundation of China (NSFC: 41571130053; 41301233) and from Natural Environmental Research Council (NERC: Code: NE/N007611/1), and by the National Key Technology R&D Program of China (2011BAD31B04). We thank two anonymous reviewers for their constructive comments.

Interspecific competition between the potato cyst nematode species Globodera pallida and G. rostochiensis

The two potato cyst nematode species, Globodera pallida and G. rostochiensis, are among the most important pests of potato. PCN are difficult to manage, while the two species respond differently to the main control methods. An increase in the incidence of G. pallida had been reported and is generally attributed to greater effectiveness of control measures against G. rostochiensis. The status of PCN in Ireland was studied using PCR. The results demonstrated qPCR to be an efficient means of high-throughput PCN sampling, being able to accurately identify both species in mixed-species populations. Species discrimination using qPCR revealed an increase in the incidence of G. pallida in Ireland in the absence of G. pallida-selective control measures. The population dynamics of G. pallida and G. rostochiensis in Ireland were studied in mixed- and single-species competition assays in vivo. G. pallida proved to be the more successful species, with greater multiplication in mixed- than single-species populations, with G. rostochiensis showing the opposite. This effect was similarly observed in staggered inoculation trials and population proportion trials. It was hypothesised that the greater G. pallida competitiveness could be attributed to its later hatch. G. pallida exhibited a later peak in hatching activity and more prolonged hatch, relative to G. rostochiensis. G. rostochiensis hatch was significantly reduced in mixedspecies hatching assays. G. pallida hatch was significantly higher when hatch was induced in potato root leachates containing G. rostochiensis-specific compounds, indicating that G. pallida hatch is stimulated upon perception of G. rostochiensis–derived compounds. Rhizotron studies revealed that root damage, caused by feeding of the early-hatching G. rostochiensis, resulted in increased lateral root proliferation and significantly increased G. pallida multiplication. Split-root trials indicated a significant G. pallida-induced ISR effect. G. rostochiensis multiplication was significantly reduced in split-root rhizotrons when G. pallida colonised roots before or after G. rostochiensis infection.

Phylum-wide transcriptome analysis of oogenesis and early embryogenesis in selected nematode species

Oogenesis is a prerequisite for embryogenesis in Metazoa. During both biological processes important decisions must be made to form the embryo and hence ensure the next generation: (1) Maternal gene products (mRNAs, proteins and nutrients) must be supplied to the embryo. (2) Polarity must be established and axes must be specified. While incorporation of maternal gene products occurs during oogenesis, the time point of polarity establishment and axis specification varies among species, as it is accomplished either prior, during, or after fertilisation. But not only the time point when these events take place varies among species but also the underlying mechanisms by which they are triggered. For the nematode model Caenorhabditis elegans the underlying pathways and gene regulatory networks (GRNs) are well understood. It is known that there the sperm entry point initiates a primary polarity in the 1-celled egg and with it the establishment of the anteroposterior axis. However, studies of other nematodes demonstrated that polarity establishment can be independent of sperm entry (Goldstein et al., 1998; Lahl et al., 2006) and that cleavage patterns, symmetry formation and cell specification also differ from C. elegans. In contrast to the studied Chromadorea (more derived nematodes including C. elegans), embryos of some marine Enoplea (more basal representatives) even show no discernible early polarity and blastomeres can adopt variable cell fates (Voronov and Panchin 1998). The underlying pathways controlling the obviously variant embryonic processes in non-Caenorhabditis nematodes are essentially unknown. In this thesis I addressed this issue by performing a detailed unbiased comparative transcriptome analysis based on microarrays and RNA sequencing of selected developmental stages in a variety of nematodes from different phylogenetic branches with C. elegans as a reference system and a nematomorph as an outgroup representative. In addition, I made use of available genomic data to determine the presence or absence of genes for which no expression had been detected. In particular, I focussed on components of selected pathways or GRNs which are known to play essential roles during C. elegans development and/or other invertebrate or vertebrate model systems. Oogenesis must be regulated differently in non-Caenorhabditis nematodes, as crucial controlling components of Wnt and sex determination signaling are absent in these species. In this respect, I identified female-specific expression of potential polarity associated genes during gonad development and oogenesis in the Enoplean nematode Romanomermis culicivorax. I could show that known downstream components of the polarity complexes PAR-3/-6/PKC-3 and PAR-1/-2 are absent in non-Caenorhabditis species. Even PAR-2 as part of the polarity complex does not exist in these nematodes. Instead, transcriptomes of nematodes (including C. elegans), show expression of other polarity-associated complexes such as the Lgl (Lethal giant larvae) complex. This result could pose an alternative route for nematodes and nematomorphs to initiate polarity during early embryogenesis. I could show that crucial pathways of axis specification, such as Wnt and BMP are very different in C. elegans compared to other nematodes. In the former, Wnt signaling, for instance, is mediated by four paralogous beta-catenins, while other Chromadorea have fewer and Enoplea only one beta-catenin. The transcriptomes of R. culicivorax and the nematomorph show that regulators of BMP (e.g. Chordin), are specifically expressed during early embryogenesis only in Enoplea and the close outgroup of nematomorphs. In conclusion, my results demonstrate that the molecular machinery controlling oogenesis and embryogenesis in nematodes is unexpectedly variable and C. elegans cannot be taken as a general model for nematode development. Under this perspective, Enoplean nematodes show more similarities with outgroups than with C. elegans. It appears that certain pathway components were lost or gained during evolution and others adopted new functions. Based on my findings I can conjecture, which pathway components may be ancestral and which were newly acquired in the course of nematode evolution.

Evaluación de trampas y atrayentes para el manejo de la mosca del mediterráneo (Ceratitis capitata Wied) con enfoque agroecológico, en el cultivo de mandarina (Citrus reticulata Blanco), la finca El Piñalito, San Marcos, Carazo

Considerando la importancia que representa la producción citrícola nicaragüense, se desarrolló el presente estudio en la finca El Piñalito, municipio de San Marcos, departamento de Carazo, durante el período de octubre 2012 a enero del 2013. El objetivo de la presente investigación fue generar información para el manejo de la mosca del mediterráneo (Ceratitis capitata Wied) en el cultivo de mandarina (Citrus reticulata Blanco) con un enfoque agroecológico. Se emplearon trampas Jackson, Tephritrap y Multilure. Los atrayentes fueron Trimedlure, Ceratrap y Torula. Se evaluó número de adultos capturados, porcentaje de machos y hembras capturados y la utilidad neta, mediante un análisis de presupues.to parcial y dominancia. Se relacionaron variables climáticas con las capturas. A los resultados se les aplicó estadísticos descriptivos, correlación, análisis de varianza de medidas repetidas y análisis de correspondencia. La trampa Tephritrap cebadas con Ceratrap capturó el mayor número de hembras y las trampas Jackson la mayor cantidad de machos. La temperatura estuvo altamente relacionada con los adultos capturados. El análisis económico determinó que los tratamientos pueden ser recomendados para el control de la mosca del mediterráneo, mediante la implementación de trampas cebadas; siendo la trampa Multilure cebada con Torula, la que resultó ser el tratamiento dominante.

Efecto de dos técnicas físicas de captación de agua sobre el establecimiento de las especies Mangifera indica L, Citrus sinensis y Coco nucifera L, en la microcuenca Las Marías, municipio de Télica. León (2007 al 2008)

En la investigación realizada en la micro cuenca Las Marías se propuso conocer el efecto de dos técnicas físicas de captación de agua sobre el establecimiento de las especies Mangifera indica L, Citrus sinensis y Coco nucifera L. Para desarrollar el proceso de recolección de información se establecieron diseños experimentales de Bloques Completos Aleatorizados, con dos repeticiones (finca Montoya parte baja y finca Miguel parte media), dentro de cada ensayo experimental se establecieron técnicas de captación de agua (cáseo y bordes) y un testigo. En cada finca se establecieron de forma azarizada 36 plántulas de Mangifera indica L, Citrus sinensis y Coco nucifera L (12 de cada especie). A cada especie se monitorearon variables de sobrevivencias, crecimiento en diámetro y altura y humedad de suelo. De igual forma se realizaron muestreos de suelo para conocer el porcentaje de humedad, infiltración y calidad física y química. El periodo de evaluación consistió de Junio 2007 a Enero 2008. Al finalizar la investigación se encontró que la especie Coco nucifera fue la que obtuvo mayor sobrevivencia (100 %), con un incremento corriente mensual (ICM) en diámetro (0.33 cm) y altura (7.73 cm), en comparación con las especies Mangifera indica y Citrus sinencis. El ICM en diámetro y altura fue similar en los tratamientos (cáseo y bordes) y el testigo (no se encontró diferencias significativa). En el tratamiento cáseo fue donde se encontró el mayor porcentaje de humedad del suelo (22.25 %) en comparación con el tratamiento bordes y el testigo. Se encontró una correlación positiva en la finca Miguel entre los porcentajes de humedad del suelo y el ICM en diámetro y altura de las especies frutales, lo cual podría estar relacionado a la calidad física y química de los suelos.

Impact of different solvents on the recovery of bioactive compounds and antioxidant properties from lemon (Citrus limon L.) pomace waste

The effects of different solvents on the recovery of (i) extractable solids (ES), (ii) total phenolic compounds (TPC), (iii) total flavonoid content (TFC), (iv) vitamin C, and (v) antioxidant activity from lemon pomace waste were investigated. The results revealed that solvents significantly affected the recovery of ES, TPC, TFC, and antioxidant properties. Absolute methanol and 50% acetone resulted in the highest extraction yields of TPC, whereas absolute methanol resulted in the highest extraction of TFC, and water had the highest recovery of vitamin C. 50% ethanol, and 50% acetone had higher extraction yields for TPC, and TFC, as well as higher antioxidant activity compared with their absolute solvents and water. TPC and TFC were shown to be the major components contributing to the antioxidant activity of lemon pomace.