Combining MHC tetramer and intracellular cytokine staining for CD8(+) T cells to reveal antigenic epitopes naturally presented on tumor cells.

As more tumor antigens are discovered and as computer-guided T cell epitope prediction programs become more sophisticated, many potential T cell epitopes are synthesized and demonstrated to be antigenic in vitro. However, it is estimated that about 50% of such tumor antigen-specific T cells have not been demonstrated to recognize the naturally presented epitopes due to either technical difficulties, such as T cell cloning which is still challenging for many laboratories; or the predicted T cell epitopes are not generated or not generated in sufficient amounts by the antigen processing machinery. However, to potentially identify clinically relevant vaccine candidate epitopes, it is essential to demonstrate natural antigen presentation. Here we combine the advantages of MHC tetramer and intracellular cytokine staining to sensitively detect natural antigen presentation by tumor cells for epitopes of interest. The novel method does not require T cell cloning or long-term T cell culture. Because the antigen-specific T cells are positively identified, this method is much less influenced by IFNgamma producing cells with unknown specificities and should be widely applicable.

Feasibility of replacing multiple ADSL connections with Multi-Dwelling Access

This final project was made for the Broadband/Implementation department of TeliaSonera Finland. The question to be examined is if the operator should replace multiple ADSL connections implemented over a leased line with Multi-Dwelling access based on an Ethernet/Optical Fibre access network. The project starts with describing the technology related to these access network solu-tions and presents the technology that is used in TeliaSonera Finland's access network. It continues from the technology to describe the problem with some of the ADSL implemen-tations of TeliaSonera. The problem is the implementations done over a leased line that can cost TeliaSonera over years as much as a possible investment to extend network when there is several lines leased to the same building. The project proposes a Multi-Dwelling access as a solution to this problem and defines the circumstances when to use it. After a satisfactory solution has found the project takes a view how implementation of the solution might alter the network and a new problem is found. When used commonly to replace need of ADSL implementation Multi-Dwelling access would significantly increase optical cable congestion near operators POP. As a final deed this project also proposes a technical change to existing way to implement multi-dwelling access with EPON technology.

Towards Integrated Governance of Landscape Development : The Swiss Model of Regional Nature Parks

Coherent regulation of landscape as a resource is a major challenge. How can the development interests of some actors (eg cable car operators and property developers) be reconciled with those of others (agriculture, forestry) and with conservation of biodiversity and scenic value? To help understand how the newly introduced Regional Nature Parks (RNPs) can improve the coherence of the regulation regime in Switzerland, we highlight current direct mechanisms for regulation of landscape as a resource (bans, inventories, subsidies) as well as indirect mechanisms (taking place through the regulation of the physical basis of landscapes, eg forest, land, and water planning policies). We show that RNPs are fundamentally innovative because they make it possible to manage and coordinate indirect strategies for appropriate regulation of resources at a landscape scale. In other words, RNPs enable organization of governance of landscape as a resource in a perimeter that is not necessarily restricted to administrative boundaries.

Assessing High-Speed Internet Access in the State of Iowa: Fifth Assessment, May 2006

The primary objective of the Fifth Assessment is to evaluate the level of progress in the deployment of high-speed Internet technologies in the State of Iowa.

Identification of novel elements of the Drosophila blisterome sheds light on potential pathological mechanisms of several human diseases.

Main developmental programs are highly conserved among species of the animal kingdom. Improper execution of these programs often leads to progression of various diseases and disorders. Here we focused on Drosophila wing tissue morphogenesis, a fairly complex developmental program, one of the steps of which - apposition of the dorsal and ventral wing sheets during metamorphosis - is mediated by integrins. Disruption of this apposition leads to wing blistering which serves as an easily screenable phenotype for components regulating this process. By means of RNAi-silencing technique and the blister phenotype as readout, we identify numerous novel proteins potentially involved in wing sheet adhesion. Remarkably, our results reveal not only participants of the integrin-mediated machinery, but also components of other cellular processes, e.g. cell cycle, RNA splicing, and vesicular trafficking. With the use of bioinformatics tools, these data are assembled into a large blisterome network. Analysis of human orthologues of the Drosophila blisterome components shows that many disease-related genes may contribute to cell adhesion implementation, providing hints on possible mechanisms of these human pathologies.

Making sense of AMPA receptor trafficking by modeling molecular mechanisms of synaptic plasticity.

Synaptic plasticity involves a complex molecular machinery with various protein interactions but it is not yet clear how its components give rise to the different aspects of synaptic plasticity. Here we ask whether it is possible to mathematically model synaptic plasticity by making use of known substances only. We present a model of a multistable biochemical reaction system and use it to simulate the plasticity of synaptic transmission in long-term potentiation (LTP) or long-term depression (LTD) after repeated excitation of the synapse. According to our model, we can distinguish between two phases: first, a "viscosity" phase after the first excitation, the effects of which like the activation of NMDA receptors and CaMKII fade out in the absence of further excitations. Second, a "plasticity" phase actuated by an identical subsequent excitation that follows after a short time interval and causes the temporarily altered concentrations of AMPA subunits in the postsynaptic membrane to be stabilized. We show that positive feedback is the crucial element in the core chemical reaction, i.e. the activation of the short-tail AMPA subunit by NEM-sensitive factor, which allows generating multiple stable equilibria. Three stable equilibria are related to LTP, LTD and a third unfixed state called ACTIVE. Our mathematical approach shows that modeling synaptic multistability is possible by making use of known substances like NMDA and AMPA receptors, NEM-sensitive factor, glutamate, CaMKII and brain-derived neurotrophic factor. Furthermore, we could show that the heteromeric combination of short- and long-tail AMPA receptor subunits fulfills the function of a memory tag.

Iowa Department of Commerce - Iowa Utilities Board, Agency Performance Plan, 2007

Annual Report, Agency Performance Plan

Subcontracting and vertical integration in the Spanish cotton industry

This paper examines changes in the organization of the Spanish cotton industry from 1720 to 1860 in its core region of Catalonia. As the Spanish cotton industry adopted the most modern technology and experienced the transition to the factory system, cotton spinning and weaving mills became increasingly vertically integrated. Asset specificity more than other factors explained this tendency towards vertical integration. The probability for a firm of being vertically integrated was higher among firms located in districts with high concentration ratios and rose with size and the use of modern machinery. Simultaneously, subcontracting predominated in other phases of production and distribution where transaction costs appears to be less important.

Transcriptional auxin-brassinosteroid crosstalk: who's talking?

The plant hormones auxin and brassinosteroid are both essential regulators of plant growth and known to influence both cell division and cell elongation in various developmental contexts. These physiological effects of auxin and brassinosteroid have been known for many years. Based on observations from external simultaneous application of both hormones to plant tissues, it has been suggested that they act in an interdependent and possibly synergistic manner. Recent work in the model plant Arabidopsis thaliana suggests that, at the molecular level, auxin-brassinosteroid synergism manifests itself in the regulation of the expression of common target genes. However, whether this reflects genuine hormone pathway-dependent crosstalk modulation of the transcription machinery or rather indirect effects of hormone action on other cellular activities, such as hormone biosynthesis or the polar transport of auxin, is not entirely clear. This article reviews the evidence for transcriptional crosstalk between auxin and brassinosteroid and its molecular basis.

The SM protein Vps33 and the t-SNARE H(abc) domain promote fusion pore opening.

Intracellular membrane fusion proceeds via distinct stages of membrane docking, hemifusion and fusion pore opening and depends on interacting families of Rab, SNARE and SM proteins. Trans-SNARE complexes dock the membranes in close apposition. Efficient fusion requires further SNARE-associated proteins. They might increase the number of trans-SNARE complexes or the fusogenic potential of a single SNARE complex. We investigated the contributions of the SM protein Vps33 to hemifusion and pore opening between yeast vacuoles. Mutations in Vps33 that weaken its interactions with the SNARE complex allowed normal trans-SNARE pairing and lipid mixing but retarded content mixing. Deleting the H(abc) domain of the vacuolar t-SNARE Vam3, which interacts with Vps33, had the same effect. This suggests that SM proteins promote fusion pore opening by enhancing the fusogenic activity of a SNARE complex. They should thus be considered integral parts of the fusion machinery.

Comportamiento de la red de arrastre de fondo (Cr. BIC SNP-1, 9505-06)

Presenta las principales características del comportamiento de la red de arrastre de fondo tipo Granton 400/127 utilizada durante el crucero de evaluación del recurso merluza efectuada en otoño de 1995. Se analiza la captura por subáreas y por estrato de profundidad, observadas en 100 lances de comprobación. Se dan resultados de la geometría de la red de arrastre en sus diferentes niveles. Se obtiene la relación de la profundidad con la longitud del cable para cada estrato de profundidad; así mismo, de la ruptura por unidad de esfuerzo por subárea.

Geometría de la red de arrastre de fondo utilizada en la prospección de recursos pelágico costeros y demersales costeros E/E Huamanga 9611-12

Describe las actividades de rastreo del E/E Huamanga, que efectuó del 01 al 18 de diciembre de 1996, entre Puerto Pizarro y Callao. Se demuestra la longitud del cable principal de arrastre y la profundidad que se determinó en una proporción de 3:1. Así mismo, la correspondencia entre los parámetros de abertura vertical y horizontal de la boca de red en función a la velocidad de arrastre, la misma que fue inversa y directamente proporcional teniendo un alto grado de correlación.

Comportamiento de la red de arrastre de fondo granton 400/127 en la evaluación de los recursos demersales. Invierno 1996

Resultados del monitoreo del comportamiento de la red Granton 400/127, utilizada durante el crucero de evaluación de recursos demersales del Crucero BIC SNP-1 9607-08. Se analizan mediante modelos de regresión lineal y múltiple transformada, las relaciones entre los principales factores que intervienen en la geometría de la red de arrastre de fondo. Se desprende que existe una gran variación entre la abertura horizontal (AH) abertura vertical (AV) y área de la boca de la red, a mayor profundidad (Estrato II y III), debido a la configuración del fondo, velocidad de arrastre, cantidad de cable principal, condiciones de corrientes, etc.

Comportamiento de redes de arrastre y selectividad de la red de fondo 400/130 en el estudio de la merluza en otoño 1997

Los resultados del comportamiento de las redes de arrastre de fondo y pelágica utilizadas en el crucero de evaluación del stock de Merluza en otoño de 1997, BIC Humboldt 9705-06, muestran, según el análisis de los modelos de regresión lineal, una buena correlación entre la abertuda vertical y la abertura horizontal entre alas de la boca de la red, en todos los estratos de profundidad; y una ligera variación en el estrato II, de la relación entre la profundidad y la longitud de cable de arrastre principal; existiendo una buena correlación en los estratos I y III debido a la configuración del fondo, velocidad de arrastre, condiciones de las corrientes submarinas, medio ambiente, etc. Así tenemos que la abertura vertical y la abertura horizontal en función a la velocidad de arrastre, fue inversa y directamente proporcional con un buen grado de correlación. La selectividad de la red de arrastre de fondo Granton 400/130 con copo de 80 mm y sobre copo de 13 mm de tamaño de malla, utilizada en la evaluación del recurso merluza se realizó mediante el método de copo cubierto. Se obtuvieron ojivas naturales de retención y escape, curvas de selección por subáreas. El factor de selección para la merluza en forma general fue de 4,0 y los rangos de selección se determinaron entre 31,1 cm a 36 cm y la ojiva natural al 50% fue de 33,20 cm.

Comportamiento de la red de arrastre de fondo tipo 450/120 empleada en el estudio de recursos demersales a inicios del invierno 1998. BIC José Olaya Balandra 9806-07 de Puerto Pizarro a Huarmey

Se determinaron correlaciones entre diferentes parámetros de funcionamiento de la red de arrastre empleadas para las calas de comprobación. Abertura vertical con Abertura horizontal, profundidad con longitud de cable, abertura vertical y abertura horizontal versus velocidad de arrastre, analizándose un total de 72 lances de comprobación. Los datos de comportamiento de la red como la abertura horizontal y abertura vertical de la boca de la red, profundidad de la red y distancia entre la relinga inferior al fondo, etc. se obtuvo en forma directa por medio del sistema SCANMAR RX 400, los arrastres tuvieron una duración promedio de 13,58 minutos con una velocidad de arrastre promedio de 3,8 nudos. Se aplicó el modelo de regresión lineal para la correlación entre los valores de: (a) abertura vertical y abertura horizontal, (b) longitud del cable de arrastre principal con la profundidad de arrastre, (c) abertura horizontal-vertical y la velocidad de arrastre.