克隆整合与植物对沙地生境的适应－毛乌素沙地的案例

我国是受荒漠化影响最为严重的国家之一。半干旱区和干燥的亚湿润区分布着大面积沙地，这些沙地是我国荒漠化土地的集中分布区和的主要的潜在发生区，也是重点治理区。在这些地区进行生态建设和生态恢复的首要任务是植被的恢复与重建。用于植被恢复和重建的植物种，必需能够适应沙地特殊的生态环境。 克隆植物是一个独特的植物类群，它广泛的分布于各种生态系统中。在长期的进化过程中，克隆植物形成了有效利用异质性资源以及克服（忍耐或逃避）局部不利环境条件的生态适应对策―克隆整合。位于鄂尔多斯高原的毛乌素沙地是我国的四大沙地之一，其生态环境的特点具备我国沙地生境的共性－干旱、土壤贫瘠、频繁的风沙活动以及异质性。在毛乌素沙地中，克隆植物广泛分布。本文以毛乌素沙地为案例研究的背景，以该区几种重要的克隆植物为研究对象，以该区主要的生态环境特点为处理因素，从不同层面来观察克隆整合对这些植物适应沙地环境的作用。 高度异质性的水分分布格局是该区的关键生态因子之一。水分传输可以帮助克隆植物利用不同斑块内的水分资源。在一个野外实验中，采用酸性品红染色喂饲的方法，研究了根茎型草本克隆植物沙鞭和根茎型克隆半灌木羊柴的克隆内水分传播格局。沙鞭克隆内的水分传输速度和强度都高于羊柴。这可能是沙鞭能够占据大面积生境的原因之一。此外，克隆植物分株间资源的传递是通过贯通的维管束进行的。水分可以在观察的沙鞭克隆片断内畅通无阻的传输，但在羊柴克隆内的传输受到限制。这可能与二者维管束结构的不同有关。 沙埋是该区植物经常遭遇的生态事件。本文研究了克隆整合在羊柴遭受空间异质性沙埋过程中的作用。结果表明，轻微程度的沙埋可以促进羊柴的生长和生物量积累;高强度的沙埋会削弱羊柴的生长和生物量积累，甚至会致死。克隆整合可以帮助羊柴抵抗空间异质性沙埋，尤其当沙埋的强度增加时，这种作用表现的更明显。实际上，沙埋的发生是逐渐进行的，即同时具有时间异质性。本文通过野外实验观察了沙鞭在时空异质性沙埋条件下的响应格局以及克隆整合的作用。研究表明，长时间间隔的沙埋促进沙鞭的生物量积累，克隆整合可以帮助沙鞭抵抗频繁发生的沙埋事件。此外，通过Meta-analysis方法综合了分布在沙地中的根茎型克隆植物对沙埋的响应格局的案例研究。结果表明，轻微的沙埋能够促进根茎型克隆植物的生物量积累，高强度的沙埋对这些植物是一种生态胁迫，克隆整合可以帮助这些植物抵抗这种生态胁迫。这强烈的支持了这样一种观点，即克隆整合是根茎型克隆植物在长期的适应进化过程中形成的抵抗高强度沙埋的生态策略。 该区也生长着很多密集型克隆植物。养分的空间异质性在各种尺度上存在，密集型克隆植物也可能经历小尺度的养分异质性。以糙隐子草为研究对象，观察其在同质和异质养分条件下的生物量、生物量配置格局以及有性繁殖和克隆生长的权衡。结果表明：在异质性的养分条件下，相连的克隆片断的总体生物量、地上无性结构生物量、根生物量以及分株大小都显著高于切断的克隆片断;同样，异质性斑块中的相连的克隆片断的表现高于同质性斑块。这暗示着克隆整合能够帮助密集型克隆植物糙隐子草更好的利用小尺度的养分异质性。 此外，通过野外调查的方式观察该区两种重要的克隆半灌木，游击型的羊柴和密集型的油蒿在小尺度不同植被盖度斑块下的生物量配置格局。结果表明：羊柴的地上各部分生物量对植被盖度变化的响应不如油蒿敏感。这可能是因为羊柴的游击型克隆构型决定其可以跨越小尺度斑块实现克隆生理整合，从而利用不同小生境斑块的资源所致。油蒿只能利用小生境斑块内的资源，当小生境斑块的条件改变，其生物量以及配置方式也随之发生相应的变化。在繁殖方式上，羊柴的有性繁殖结构以及有性繁殖投资显著小于油蒿。在资源有限的条件下，对一种繁殖方式的投资常常会削弱另一种繁殖方式。羊柴主要依靠克隆生长，这符合并支持配置理论的观点。植物的空间格局与植物自身的生活史性状密切相关。羊柴和油蒿不同的生活史特性必然会在各自的种群空间格局中体现出来。本文还采用地统计学的方法，观察二者的种群空间格局。种群水平上，小尺度的空间自相关控制着羊柴种群的空间格局;油蒿种群的空间格局受更大尺度的过程控制，并在自身为建群种的群落随机分布。对于油蒿种群而言，发生在小于抽样尺度（<1m）的随机变异高于相应的羊柴种群。这两种克隆半灌木的种群空间格局的差异可能与二者克隆构型和克隆性的不同有关。 本文的研究对象不仅涉及根茎型克隆草本植物，还包括了克隆半灌木，不仅涉及游击型克隆植物，而且涵盖了密集型克隆植物。因此，本文的研究不仅有助于在理论上理解克隆植物对异质性生境的适应策略，在实践上也能为该区的生态恢复提供一定的理论依据。

干旱胁迫下草莓水分调控及光合特性研究

以盆栽草莓(Fragaria×ananassa)为材料研究了水分胁迫下克隆植物草莓母株和子株间的水分调控机制及其与碳同化、光系统II激发能分配的关系。实验材料分为匍匐茎连接和剪断两个大组，进行两步实验。第一步实验，对连接组和剪断组的所有母株控水，子株充分供水；4天后进入第二步实验，把连接组分为两小组，对其中一组充分供水子株开始控水，另一组保持不变。结果表明，土壤干旱引起母株叶片失水，并使其净光合速率和气孔导度显著降低。但是连接组中供水良好的子株能有效缓解缺水母株的水分胁迫。当供水良好的子株也开始受到干旱处理的时候，则会加剧与之相连母株的水分胁迫。受胁迫母株可以通过加强渗透调节能力和降低水势从相连子株获取水分。虽然土壤干旱会造成受胁迫母株叶片脱落酸（abscisic acid, ABA）含量的大幅度增加，但是与之相连子株的叶片ABA含量并没有增加；并且气孔导度与ABA变化趋势一致。因此，我们认为：(1)草莓母株和子株间的水分运输是由二者的水势差驱动的；（2）ABA不会通过匍匐茎在母株和子株间传递并影响相邻子株气孔导度；（3）在水分异质性较大情况下，生理整合可明显提高克隆系统的碳同化能力和光系统II激发能利用效率。 同时研究了水分胁迫对草莓叶片叶绿素荧光诱导动力学参数Fm的影响。结果表明，在水分胁迫初期, 活体草莓叶片失水萎缩、叶面积和叶片厚度减小，单位叶面积的叶绿素含量升高，此时叶绿素荧光动力学参数Fm上升；当水分胁迫进一步加剧，单位叶面积的叶绿素含量开始下降，但Fm没有随之下降。离体叶片测定则没有出现Fm上升这一过程，Fm随着单位叶面积叶绿素含量的下降而下降。叶片叠加实验证明，增加叶片厚度也可以使Fm上升。综上我们认为在干旱胁迫进程中，活体草莓叶片的荧光动力学参数Fm出现上升是由单位面积叶绿素含量和叶片结构的变化共同决定的。

THE CHROMOSOMES OF TUFTED DEER (ELAPHODUS-CEPHALOPHUS)

Mitotic and meiotic chromosome preparations of the tufted deer (Elaphodus cephalophus) were studied to elucidate the sex-chromosomal polymorphism evidenced by this species. Females had 2n = 46 or 47 chromosomes, whereas males had 2n = 47 or 48 chromosomes. An X;autosome translocation was identified by synaptonemal complex analysis of spermatocytes at pachytene and confirmed by the presence of a trivalent at diakinesis/metaphase I. The present work, in combination with earlier observations by others, indicates that E. cephalophus possesses a varied X-chromosome morphology involving an X;autosome translocation and addition of varying amounts of heterochromatin. It is speculated that sex-chromosome polymorphism may be responsible for the observed differences in diploid chromosome number of tufted deer.

Conserved chromosome segments in Hylobates hoolock revealed by human and H-leucogenys paint probes

A complete comparative chromosome map of the white-browed gibbon (Hylobates hoolock, 2n = 38), white-cheeked gibbon (Hylobates leucogenys, 2n = 52), and human has been established by hybridising H. leucogenys chromosome-specific paints and human 24-colour paints onto H. hoolock metaphase chromosomes. In the 18 H. hoolock autosomes, we identified 62 conserved segments that showed DNA homology to regions of the 25 H. leucogenys autosomes, Numerous interchromosomal rearrangements differentiate the karyotypes of H. leucogenys and H. hoolock. Only H. hoolock chromosome 10 showed homology to one entire autosome of H. leucogenys. The hybridisation of human 24-colour paints not only confirmed most of the chromosome correspondences between human and H. hoolock established previously but also helped to correct five erroneous assignments and revealed three new segments. Our results demonstrate that the karyotypes of the extant gibbons have arisen mainly through extensive translocation events and that the karyotype of H. hoolock more closely resembles the ancestral karyotype of Hylobates, rather than the karyotype of H. leucogenys. Copyright (C) 2001 S. Karger AG, Basel.

Karyotypic relationships of horses and zebras: results of cross-species chromosome painting

Complete sets of chromosome-specific painting probes, derived from flow-sorted chromosomes of human (HSA), Equus caballus (ECA) and Equus burchelli (EBU) were used to delineate conserved chromosomal segments between human and Equits burchelli, and among four equid species, E. przewalskii (EPR), E. caballus, E. burchelli and E. zebra hartmannae (EZH) by cross-species chromosome painting. Genome-wide comparative maps between these species have been established. Twenty-two human autosomal probes revealed 48 conserved segments in E. burchelli. The adjacent segment combinations HSA3/21, 7/16p, 16q/19q, 14/15, 12/22 and 4/8, presumed ancestral syntenies for all eutherian mammals, were also found conserved in E. burchelli. The comparative maps of equids allow for the unequivocal characterization of chromosomal rearrangements that differentiate the karyotypes of these equid species. The karyotypes of E. przewalskii and E. caballus differ by one Robertsonian translocation (ECA5 = EPR23 + EPR24); numerous Robertsonian translocations and tandem fusions and several inversions account for the karyotypic differences between the horses and zebras. Our results shed new light on the karyotypic evolution of Equidae. Copyright (C) 2003 S. Karger AG, Basel.

The mitochondrial genome organization of the rice frog, Fejervarya limnocharis (Amphibia : Anura): a new gene order in the vertebrate mtDNA

The mitochondrial DNA of the rice frog, Fejervarya limnocharis (Amphibia, Anura), was obtained using long-and-accurate polymerase chain reaction (LA-PCR) combining with subcloning method. The complete nucleotide sequence (17,717 bp) of mitochondrial genome was determined subsequently. This mitochondrial genome is characterized by four distinctive features: the translocation of ND5 gene, a cluster of rearranged tRNA genes (tRNA(Thr), tRNA(Pro), tRNA(Leu) ((CUN))) a tandem duplication of tRNA(Mer) gene, and eight large 89-bp tandem repeats in the control region, as well as three short noncoding regions containing two repeated motifs existing in the gene cluster of ND5/tRNA(Thr)/tRNA(Pro)/tRNA(Leu)/tRNA(Phe). The tandem duplication of gene regions followed by deletions of supernumerary genes can be invoked to explain the shuffling of tRNAM(Met) and a cluster of tRNA and ND5 genes, as observed in this study. Both ND5 gene translocation and tandem duplication of tRNA(Met) were first observed in the vertebrate mitochondrial genomes. (c) 2004 Elsevier B.V. All rights reserved.

Effects of atrazine herbicide on physiological, biochemical and histological biomarkers of developmental stages of larvae and fry in Caspian kutum, Rutilus frisii kutum

To investigation of the toxic effects of atrazine on newly hatched larvae and releasing age fry of the Caspian Kutum, Rutilus frisii kutum, the 96h LC50 was determined as 18.53 ppm and 24.95 ppm, respectively. Newly hatched larvae were exposed to three sublethal concentrations of atrazine (1/2LC50, 1/4LC50 and 1/8LC50) for 7 days. Different histopathological alterations were observed in fins and integument, gills, Kidney, digestive system, liver and the brain of the exposed larvae. Fry’s were exposed to one sublethal concentration of atrazine (1/2LC50) for four days, and like the larvae’s, many histopathological alterations were observed in fins and integument, gills, Kidney, digestive system, liver and the brain of the exposed fry’s, too. Also, measurements of the body ions: Na+, K+, Ca2+, Mg2+ and Cl- in atrazine exposed larvae and fry’s compare to control groups showed that atrazine is changed the body ions composition. No significant differences were found in length growth rate, weight growth rate and the condition factor of the atrazine exposed larvae and fry. Immunohistochemical localization of the Na+, K+-ATPase in integumentary and gill ionocytes, showed no differences in dispersion pattern of the ionocytes in atrazine exposed larvae and fry, compare to control group. Measuring the dimensions of the ionocytes and counting the ionocytes showed that atrazine is affecting on ionocytes by mild increasing in size and mild decreasing in number. Ultrastructural studies, using SEM and TEM, showed that atrazine have significant effects on cellular and subcellular properties. It caused necrosis in surface of the pavement cells in branchial epithelium, necrosis in endoplasmic reticulum of the ionocytes and changed the shape of the mitochondria in these cells. Results showed that sublethal concentrations of atrazine were very toxic to larvae and fry of the Rutilus frisii kutum, and at these levels can made some serious histopathological alterations in their tissues. Related to the severe histopathological alterations in osmoregulatory organs, like gill, kidney and digestive system, and the alterations in the body ion composition, it could be concluded that atrazine could interfere with the osmoregulation process of the Rutilus frisii kutum at the early stages of the life history.

Characterizing the mechanics of cultured cell monolayers.

One-cell-thick monolayers are the simplest tissues in multicellular organisms, yet they fulfill critical roles in development and normal physiology. In early development, embryonic morphogenesis results largely from monolayer rearrangement and deformation due to internally generated forces. Later, monolayers act as physical barriers separating the internal environment from the exterior and must withstand externally applied forces. Though resisting and generating mechanical forces is an essential part of monolayer function, simple experimental methods to characterize monolayer mechanical properties are lacking. Here, we describe a system for tensile testing of freely suspended cultured monolayers that enables the examination of their mechanical behavior at multi-, uni-, and subcellular scales. Using this system, we provide measurements of monolayer elasticity and show that this is two orders of magnitude larger than the elasticity of their isolated cellular components. Monolayers could withstand more than a doubling in length before failing through rupture of intercellular junctions. Measurement of stress at fracture enabled a first estimation of the average force needed to separate cells within truly mature monolayers, approximately ninefold larger than measured in pairs of isolated cells. As in single cells, monolayer mechanical properties were strongly dependent on the integrity of the actin cytoskeleton, myosin, and intercellular adhesions interfacing adjacent cells. High magnification imaging revealed that keratin filaments became progressively stretched during extension, suggesting they participate in monolayer mechanics. This multiscale study of monolayer response to deformation enabled by our device provides the first quantitative investigation of the link between monolayer biology and mechanics.

Nanotubes complexed with DNA and proteins for resistive-pulse sensing

We use a resistive-pulse technique to analyze molecular hybrids of single-wall carbon nanotubes (SWNTs) wrapped in either single-stranded DNA or protein. Electric fields confined in a glass capillary nanopore allow us to probe the physical size and surface properties of molecular hybrids at the single-molecule level. We find that the translocation duration of a macromolecular hybrid is determined by its hydrodynamic size and solution mobility. The event current reveals the effects of ion exclusion by the rod-shaped hybrids and possible effects due to temporary polarization of the SWNT core. Our results pave the way to direct sensing of small DNA or protein molecules in a large unmodified solid-state nanopore by using nanofilaments as carriers. © 2013 American Chemical Society.

Generating suspended cell monolayers for mechanobiological studies.

Cell monolayers line most of the surfaces and cavities in the human body. During development and normal physiology, monolayers sustain, detect and generate mechanical stresses, yet little is known about their mechanical properties. We describe a cell culture and mechanical testing protocol for generating freely suspended cell monolayers and examining their mechanical and biological response to uniaxial stretch. Cells are cultured on temporary collagen scaffolds polymerized between two parallel glass capillaries. Once cells form a monolayer covering the collagen and the capillaries, the scaffold is removed with collagenase, leaving the monolayer suspended between the test rods. The suspended monolayers are subjected to stretching by prying the capillaries apart with a micromanipulator. The applied force can be measured for the characterization of monolayer mechanics. Monolayers can be imaged with standard optical microscopy to examine changes in cell morphology and subcellular organization concomitant with stretch. The entire preparation and testing protocol requires 3-4 d.

Elongation Factor ELL (Eleven-Nineteen Lysine-rich Leukemia) Acts as a Transcription Factor for Direct Thrombospondin-1 Regulation

The eleven-nineteen lysine-rich leukemia (ELL) gene undergoes translocation and fuses in-frame to the multiple lineage leukemia gene in a substantial proportion of patients suffering from acute forms of leukemia. Studies show that ELL indirectly modulates transcription by serving as a regulator for transcriptional elongation as well as for p53, U19/Eaf2, and steroid receptor activities. Our in vitro and in vivo data demonstrate that ELL could also serve as a transcriptional factor to directly induce transcription of the thrombospondin-1 (TSP-1) gene. Experiments using ELL deletion mutants established that full-length ELL is required for the TSP-1 up-regulation and that the trans-activation domain likely resides in the carboxyl terminus. Moreover, the DNA binding domain may localize to the first 45 amino acids of ELL. Not surprisingly, multiple lineage leukemia-ELL, which lacks these amino acids, did not induce expression from the TSP-1 promoter. In addition, the ELL core-response element appears to localize in the -1426 to -1418 region of the TSP-1 promoter. Finally, studies using zebrafish confirmed that ELL regulates TSP-1 mRNA expression in vivo, and ELL could inhibit zebrafish vasculogenesis, at least in part, through up-regulating TSP-1. Given the importance of TSP-1 as an anti-angiogenic protein, our findings may have important ramifications for better understanding cancer.

Identification of a novel gene K23 over-expressed in fish cross-subfamily cloned embryos

A novel gene-K23, differentially expressed in cross-subfamily cloned embryos, was isolated by RACE-PCR technique. It had 2580 base pairs (bp) in length, with a 1,425 bp open reading frame (ORF) encoding a putative protein of 474 amino acids (aa). Bioinformatic analysis indicated that K23 had 22 phosphorylation sites, but it had no signal peptides. Developmental expression analysis in zebrafish showed that K23 transcripts were maternally expressed in ovum and the amount of K23 transcripts increased gradually from zygote to pharyngula period. Subcellular localization analysis revealed that K23 protein was homogeneously distributed both in nuclei and cytoplasm. Taken together, our findings indicate that K23 gene is a novel gene differentially expressed in fish cross-subfamily cloned embryos.

Rana grylio virus thymidine kinase gene: an early gene of iridovirus encoding for a cytoplasmic protein

The presence of thymidine kinase (TK) is a feature of many large DNA viruses. Here, a TK gene homologue was cloned and characterized from Rana grylio virus (RGV), a member of family Iridoviridae. RGV TK encodes a protein of 195 aa with a predicted molecular mass of 22.1 kDa. Homologues of the protein were present in all the currently sequenced iridoviruses, and phylogenetic analysis showed that it was much close to cellular TK type 2 (TK2), deoxycytidine kinase (dCK) and deoxyguanosine kinase (dGK). Subsequently, Western blotting revealed TK expression increased with time from 6 h post-infection in RGV-infected cells. Using drug inhibition analysis by protein synthesis inhibitor (cycloheximide) and DNA replication inhibitor (cytosine arabinofuranoside), RGV TK was classified as the early expression gene during in vitro infection. Subcellular localization by TK-GFP fusion protein expression and immunofluorescence staining showed RGV TK was an exclusively cytoplasmic protein in fish cells. Collectively, current data indicate that RGV TK was an early gene of iridovirus which encoded a cytoplasmic protein in fish cells.

Enhanced protection against oxidative stress in an astaxanthin-overproduction Haematococcus mutant (Chlorophyceae)

Many unicellular green algae can become yellow or red in various natural habitats due to mass accumulation of a secondary carotenoid, such as lutein, or astaxanthin. The accumulation of secondary carotenoids is generally thought to be a survival strategy of the algae under photo-oxidative stress or other adverse environmental conditions. The physiological role of the carotenoids in stress response is less well understood at the subcellular or molecular level. In this study, a stable astaxanthin overproduction mutant (MT 2877) was isolated by chemical mutagenesis of a wild type (WT) of the green microalga Haematococcus pluvialis Flotow NIES-144. MT 2877 was identical to the WT with respect to morphology, pigment composition, and growth kinetics during the early vegetative stage of the life cycle. However, it had the ability to synthesize and accumulate about twice the astaxanthin content of the WT under high light, or under high light in the presence of excess amounts of ferrous sulphate and sodium acetate. Under stress, the mutant exhibited higher photosynthetic activities than the WT, based on considerably higher chlorophyll fluorescence induction, chlorophyll autofluorescence intensities, and oxygen evolution rates. Cell mortality caused by stress was reduced by half in the mutant culture compared with the WT. Enhanced protection of the mutant against stress is attributed to its accelerated carotenogenesis and accumulation of astaxanthin. Our results suggest that MT 2877, or other astaxanthin overproduction Haematococcus mutants, may offer dual benefits, as compared with the wild type, by increasing cellular astaxanthin content while reducing cell mortality during stress-induced carotenogenesis.

Inductive transcription and protective role of fish heme oxygenase-1 under hypoxic stress

Heme oxygenase-1 is the rate-limiting enzyme in the degradation of heme into biliverdin, carbon monoxide and free divalent iron. In this study, we cloned heme oxygenase isoform 1 (CaHO-1) from a hypoxia-tolerant teleost fish Carassius auratus. The full-length cDNA of CaHO-1 is 1247 bp and encodes a protein of 272 amino acids. RT-PCR and real-time PCR analysis indicated that CaHO-1 was predominantly transcribed in posterior kidney, head kidney, gill and intestine, and induction of gene transcription was observed predominantly in posterior kidney under hypoxic stress. Moreover, the hypoxia-induced transcription was confirmed in goldfish larvae and in in vitro cultured CAB cells. Fluorescence of the HO-1-GFP fusion protein revealed a cytoplasmic and plasma membrane localization, which was consistent with the putative transmembrane structure. Subsequently, we established a stably transfected CAB/pcDNA3.1-HO-1 cell line and a control CAB/pcDNA3.1 cell line, and found that the number of dead cells was obviously reduced in the pcDNA3.1-HO-1-transfected group following 4 days of hypoxic (1% O-2) treatment in comparison with numerous detached dead cells in the control pcDNA3.1-transfected cells. Furthermore, a significant cell viability difference between the two kinds of transfected cells during hypoxia-reoxygenation was revealed. Therefore, the data suggest that fish HO-1 might play a significant protective role in cells in response to hypoxic stress.