Symphony no. 10 in F Sharp major

Soitinnus: orkesteri.

Symphony no. 1

Soitinnus: orkesteri.

Inhimillisen pääoman arvottaminen henkilöstöpalveluyrityksessä

Tutkimuksessa selvitetään mistä elementeistä muodostuvat henkilöstöpalveluyritykselle soveltuva inhimillisen pääoman arvottamisen malli. Tutkimusaineistona käytetään kohdeyrityksessä suoritettua osaamiskartoituksen tuloksia, sekä soveltaen aikaisempaa tutkimustyötä inhimillisen pääoman arvottamisen malleista. Tutkimuksen teoreettinen pohja on haettu aiheen tutkimuspapereista ja kirjallisuudesta. Tuotetun mallin osat muodostuvat tutkimusaineiston tuloksista, kehitetyistä strategia- ja pisteytysfunktioista, sekä inhimillisen pääoman arvottamisen matriisista, joka toimii samalla raportointi- ja johtamisnäkymänä. Tuotettu tutkimustulos inhimillisen pääoman arvottamisen mallista tukee vahvasti kohdeyrityksen tiedossa olevia osaamisen ja kyvykkyyksien suuntaviivoja. Sen avulla on kuitenkin kyetty ensimmäistä kertaa luomaan syvempi näkemys kohdeyrityksen inhimillisen pääoman keskittymiin sekä vahvuuksiin ja puutteisiin.

Gene expression profiling analysis of lung adenocarcinoma

The present study screened potential genes related to lung adenocarcinoma, with the aim of further understanding disease pathogenesis. The GSE2514 dataset including 20 lung adenocarcinoma and 19 adjacent normal tissue samples from 10 patients with lung adenocarcinoma aged 45-73 years was downloaded from Gene Expression Omnibus. Differentially expressed genes (DEGs) between the two groups were screened using the t-test. Potential gene functions were predicted using functional and pathway enrichment analysis, and protein-protein interaction (PPI) networks obtained from the STRING database were constructed with Cytoscape. Module analysis of PPI networks was performed through MCODE in Cytoscape. In total, 535 upregulated and 465 downregulated DEGs were identified. These included ATP5D, UQCRC2, UQCR11 and genes encoding nicotinamide adenine dinucleotide (NADH), which are mainly associated with mitochondrial ATP synthesis coupled electron transport, and which were enriched in the oxidative phosphorylation pathway. Other DEGs were associated with DNA replication (PRIM1, MCM3, and RNASEH2A), cell surface receptor-linked signal transduction and the enzyme-linked receptor protein signaling pathway (MAPK1, STAT3, RAF1, and JAK1), and regulation of the cytoskeleton and phosphatidylinositol signaling system (PIP5K1B, PIP5K1C, and PIP4K2B). Our findings suggest that DEGs encoding subunits of NADH, PRIM1, MCM3, MAPK1, STAT3, RAF1, and JAK1 might be associated with the development of lung adenocarcinoma.

Defining Contexts in Context-Free Grammars

This thesis introduces an extension of Chomsky’s context-free grammars equipped with operators for referring to left and right contexts of strings.The new model is called grammar with contexts. The semantics of these grammars are given in two equivalent ways — by language equations and by logical deduction, where a grammar is understood as a logic for the recursive definition of syntax. The motivation for grammars with contexts comes from an extensive example that completely defines the syntax and static semantics of a simple typed programming language. Grammars with contexts maintain most important practical properties of context-free grammars, including a variant of the Chomsky normal form. For grammars with one-sided contexts (that is, either left or right), there is a cubic-time tabular parsing algorithm, applicable to an arbitrary grammar. The time complexity of this algorithm can be improved to quadratic,provided that the grammar is unambiguous, that is, it only allows one parsefor every string it defines. A tabular parsing algorithm for grammars withtwo-sided contexts has fourth power time complexity. For these grammarsthere is a recognition algorithm that uses a linear amount of space. For certain subclasses of grammars with contexts there are low-degree polynomial parsing algorithms. One of them is an extension of the classical recursive descent for context-free grammars; the version for grammars with contexts still works in linear time like its prototype. Another algorithm, with time complexity varying from linear to cubic depending on the particular grammar, adapts deterministic LR parsing to the new model. If all context operators in a grammar define regular languages, then such a grammar can be transformed to an equivalent grammar without context operators at all. This allows one to represent the syntax of languages in a more succinct way by utilizing context specifications. Linear grammars with contexts turned out to be non-trivial already over a one-letter alphabet. This fact leads to some undecidability results for this family of grammars

Computational models for and from biology : simple gene assembly and reaction systems

The advancement of science and technology makes it clear that no single perspective is any longer sufficient to describe the true nature of any phenomenon. That is why the interdisciplinary research is gaining more attention overtime. An excellent example of this type of research is natural computing which stands on the borderline between biology and computer science. The contribution of research done in natural computing is twofold: on one hand, it sheds light into how nature works and how it processes information and, on the other hand, it provides some guidelines on how to design bio-inspired technologies. The first direction in this thesis focuses on a nature-inspired process called gene assembly in ciliates. The second one studies reaction systems, as a modeling framework with its rationale built upon the biochemical interactions happening within a cell. The process of gene assembly in ciliates has attracted a lot of attention as a research topic in the past 15 years. Two main modelling frameworks have been initially proposed in the end of 1990s to capture ciliates’ gene assembly process, namely the intermolecular model and the intramolecular model. They were followed by other model proposals such as templatebased assembly and DNA rearrangement pathways recombination models. In this thesis we are interested in a variation of the intramolecular model called simple gene assembly model, which focuses on the simplest possible folds in the assembly process. We propose a new framework called directed overlap-inclusion (DOI) graphs to overcome the limitations that previously introduced models faced in capturing all the combinatorial details of the simple gene assembly process. We investigate a number of combinatorial properties of these graphs, including a necessary property in terms of forbidden induced subgraphs. We also introduce DOI graph-based rewriting rules that capture all the operations of the simple gene assembly model and prove that they are equivalent to the string-based formalization of the model. Reaction systems (RS) is another nature-inspired modeling framework that is studied in this thesis. Reaction systems’ rationale is based upon two main regulation mechanisms, facilitation and inhibition, which control the interactions between biochemical reactions. Reaction systems is a complementary modeling framework to traditional quantitative frameworks, focusing on explicit cause-effect relationships between reactions. The explicit formulation of facilitation and inhibition mechanisms behind reactions, as well as the focus on interactions between reactions (rather than dynamics of concentrations) makes their applicability potentially wide and useful beyond biological case studies. In this thesis, we construct a reaction system model corresponding to the heat shock response mechanism based on a novel concept of dominance graph that captures the competition on resources in the ODE model. We also introduce for RS various concepts inspired by biology, e.g., mass conservation, steady state, periodicity, etc., to do model checking of the reaction systems based models. We prove that the complexity of the decision problems related to these properties varies from P to NP- and coNP-complete to PSPACE-complete. We further focus on the mass conservation relation in an RS and introduce the conservation dependency graph to capture the relation between the species and also propose an algorithm to list the conserved sets of a given reaction system.

Sinfoniaorkesterin hiilijalanjälki. Case: Sinfonia Lahti

Diplomityön tavoitteena on selvittää sinfoniaorkesterin toiminnan merkittävimmät kasvihuonekaasupäästölähteet sekä kuinka kasvihuonekaasupäästöjä voidaan vähentää ja/tai kompensoida niin, että voidaan saavuttaa hiilineutraalius. Tavoitteena on myös tutkia sinfoniaorkesterin vaikutusmahdollisuudet sen sidosryhmiin. Tuloksia tarkastellaan myös globaalissa mittakaavassa, jolloin nähdään millainen vaikutus sinfoniaorkestereiden hiilineutraaliudella olisi ilmastonmuutoksen hillinnässä. Diplomityössä esitetään ensin hiilijalanjälkilaskentaa ja musiikkiteollisuutta yleisesti, jonka jälkeen selvitetään case-tutkimuksena Sinfonia Lahden hiilijalanjälki. Hiilijalanjälkilaskenta perustuu Sinfonia Lahden antamiin tietoihin, minkä lisäksi hyödynnetään diplomityön yhteydessä tehtyjen kyselyjen tuloksia. Kyselyjen tarkoituksena on selvittää sekä Sinfonia Lahden henkilöstön että yleisön matkustustottumuksia. Sinfonia Lahden henkilöstölle järjestettiin myös workshop, jossa tutustuttiin tarkemmin ilmastonmuutokseen. Hiilineutraalius saavutetaan selvittämällä toiminnasta aiheutuvat kasvihuonekaasupäästöt. Tämän jälkeen toimintaa muutetaan vähäpäästöisemmäksi ja lopuksi jäljelle jäävät kasvihuonekaasupäästöt kompensoidaan. Vaikka Sinfonia Lahden merkittävimmät kasvihuonekaasupäästölähteet ovat liikenne sekä energiankulutus, päästövähennyksiä tulee tehdä pysyvästi kaikista mahdollisista toiminnoista. Erityisen tärkeää on saada sidosryhmät osallistumaan sinfoniaorkesterin asettamiin vähennystavoitteisiin. Kompensoinnilla on merkittävä rooli hiilineutraaliuden saavuttamisessa. Tällä hetkellä maailman sinfoniaorkesterit eivät aktiivisesti pyri hiilineutraaliin toimintaan.

3D movement and muscle activity patterns in a violin bowing task

Objective: Overuse injuries in violinists are a problem that has been primarily analyzed through the use of questionnaires. Simultaneous 3D motion analysis and EMG to measure muscle activity has been suggested as a quantitative technique to explore this problem by identifying movement patterns and muscular demands which may predispose violinists to overuse injuries. This multi-disciplinary analysis technique has, so far, had limited use in the music world. The purpose of this study was to use it to characterize the demands of a violin bowing task. Subjects: Twelve injury-free violinists volunteered for the study. The subjects were assigned to a novice or expert group based on playing experience, as determined by questionnaire. Design and Settings: Muscle activity and movement patterns were assessed while violinists played five bowing cycles (one bowing cycle = one down-bow + one up-bow) on each string (G, D, A, E), at a pulse of 4 beats per bow and 100 beats per minute. Measurements: An upper extremity model created using coordinate data from markers placed on the right acromion process, lateral epicondyle of the humerus and ulnar styloid was used to determine minimum and maximum joint angles, ranges of motion (ROM) and angular velocities at the shoulder and elbow of the bowing arm. Muscle activity in right anterior deltoid, biceps brachii and triceps brachii was assessed during maximal voluntary contractions (MVC) and during the playing task. Data were analysed for significant differences across the strings and between experience groups. Results: Elbow flexion/extension ROM was similar across strings for both groups. Shoulder flexion/extension ROM increaslarger for the experts. Angular velocity changes mirrored changes in ROM. Deltoid was the most active of the muscles assessed (20% MVC) and displayed a pattern of constant activation to maintain shoulder abduction. Biceps and triceps were less active (4 - 12% MVC) and showed a more periodic 'on and off pattern. Novices' muscle activity was higher in all cases. Experts' muscle activity showed a consistent pattern across strings, whereas the novices were more irregular. The agonist-antagonist roles of biceps and triceps during the bowing motion were clearly defined in the expert group, but not as apparent in the novice group. Conclusions: Bowing movement appears to be controlled by the shoulder rather than the elbow as shoulder ROM changed across strings while elbow ROM remained the same. Shoulder injuries are probably due to repetition as the muscle activity required for the movement is small. Experts require a smaller amount of muscle activity to perform the movement, possibly due to more efficient muscle activation patterns as a result of practice. This quantitative multidisciplinary approach to analysing violinists' movements can contribute to fuller understanding of both playing demands and injury mechanisms .

Carl M. Wolff fonds

The bulk of the materials consist of administrative records, minutes programs and publicity material for The Niagara Symphony Association, St. Catharines Community Concerts, The Brock University Fine Arts Committee and Brock University convocations.

Improving Short DNA Sequence Alignment with Parallel Computing

Variations in different types of genomes have been found to be responsible for a large degree of physical diversity such as appearance and susceptibility to disease. Identification of genomic variations is difficult and can be facilitated through computational analysis of DNA sequences. Newly available technologies are able to sequence billions of DNA base pairs relatively quickly. These sequences can be used to identify variations within their specific genome but must be mapped to a reference sequence first. In order to align these sequences to a reference sequence, we require mapping algorithms that make use of approximate string matching and string indexing methods. To date, few mapping algorithms have been tailored to handle the massive amounts of output generated by newly available sequencing technologies. In otrder to handle this large amount of data, we modified the popular mapping software BWA to run in parallel using OpenMPI. Parallel BWA matches the efficiency of multithreaded BWA functions while providing efficient parallelism for BWA functions that do not currently support multithreading. Parallel BWA shows significant wall time speedup in comparison to multithreaded BWA on high-performance computing clusters, and will thus facilitate the analysis of genome sequencing data.

Passive Solar Building Design Using Genetic Programming

Passive solar building design is the process of designing a building while considering sunlight exposure for receiving heat in winter and rejecting heat in summer. The main goal of a passive solar building design is to remove or reduce the need of mechanical and electrical systems for cooling and heating, and therefore saving energy costs and reducing environmental impact. This research will use evolutionary computation to design passive solar buildings. Evolutionary design is used in many research projects to build 3D models for structures automatically. In this research, we use a mixture of split grammar and string-rewriting for generating new 3D structures. To evaluate energy costs, the EnergyPlus system is used. This is a comprehensive building energy simulation system, which will be used alongside the genetic programming system. In addition, genetic programming will also consider other design and geometry characteristics of the building as search objectives, for example, window placement, building shape, size, and complexity. In passive solar designs, reducing energy that is needed for cooling and heating are two objectives of interest. Experiments show that smaller buildings with no windows and skylights are the most energy efficient models. Window heat gain is another objective used to encourage models to have windows. In addition, window and volume based objectives are tried. To examine the impact of environment on designs, experiments are run on five different geographic locations. Also, both single floor models and multi-floor models are examined in this research. According to the experiments, solutions from the experiments were consistent with respect to materials, sizes, and appearance, and satisfied problem constraints in all instances.

Photograph - Julia Cleveland Woodruff in Sequined Dress

Black and white photograph, 23 cm x 18 cm, of Julia Cleveland Woodruff wearing a sequined dress and a string of pearls. The photo was taken by Dudley Hoyt of New York. This is a head and shoulders photograph.

Photograph - Margaret Julia Woodruff Band in a Lace Dress

Black and white photograph, 17 cm x 13 ½, of Margaret Julia Woodruff Band in a seated position wearing a lace dress and a string of pearls. The photo was taken by Dudley Hoyt of New York.

Camp Niagara Field Site States Forms from July to October 1916

A set of forms which was held together by a string. The title page is brittle and crumbling. Each page is dated and signed either by the Colonel or Lieutenant Colonel A.A.G. [Assistand Adjutant General] Niagara.