Diversidade genética de Begomovirus que infectam plantas invasoras na região nordeste

Os Begomovirus fazem parte de uma família numerosa de fitovírus denominada Geminiviridae. Eles infectam ampla gama de hospedeiras, incluindo muitas espécies cultivadas, como tomate (Lycopersicon esculentum), feijão (Phaseolus vulgaris), pimentão (Capsicum annuum), caupi (Vigna unguiculata), mandioca (Manihot esculenta) etc., além de plantas invasoras de várias espécies. Em alguns casos, plantas invasoras podem funcionar como reservatórios desses vírus para plantas cultivadas, mediante transmissão pelo inseto-vetor. No presente trabalho, plantas invasoras com sintomas de mosaico amarelo, deformação do limbo foliar e redução do crescimento foram avaliadas no tocante à presença de Begomovirus mediante a técnica de PCR, empregando-se oligonucleotídeos universais para detecção desses vírus. Foram avaliadas 11 amostras, correspondendo a 10 espécies, coletadas em municípios dos Estados de Alagoas, Pernambuco e Bahia. Algumas, como Herissantia crispa, Waltheria indica e Triumfetta semitriloba, são relatadas pela primeira vez como espécies hospedeiras de Begomovirus. Para estimar a variabilidade genética dos Begomovirus detectados, o produto de amplificação dos diversos isolados foi clivado com as enzimas de restrição EcoRI, HinfI e TaqI. Confirmando resultados obtidos para plantas cultivadas por outros grupos de pesquisa, foram observados padrões distintos de clivagem para os isolados estudados, evidenciando a grande variabilidade genética desses vírus.

Bioöljy ja pyrolyysi

Tutkielma käsittelee pyrolyysiöljyn erityisesti Suomessa käytettäviä raaka-aineita puun kuorta ja hakkuujätettä sekä puubiomassan yleistä koostumusta. Pyrolyysiöljyn koostumus, ominaisuudet, edut ja haitat sekä käyttökohteet erilaisissa teollisuuden sovelluksissa muodostaa olennaisen osan tutkielmaa. Pyrolyysiöljyn valmistus on vasta historiansa alussa, joten eri näkökulmista hyviä ja huonoja valmistustapoja on erittäin monta. Näistä tärkeimpiä esitellään työssä. Lisäksi tutkielma sisältää katsauksen olemassa olevaan Suomalaiseen pyrolyysiöljyn valmistukseen Joensuussa ja tulevaisuuden bioöljyjalostamoliiketoimintaan Green Fuel Nordic –yhtiön toimesta. Lyhyesti tehdään myös katsaus suomalaiseen alan tutkimukseen sekä pyrolyysiöljyn jatkojalostamiseen muuhunkin käyttöön kuin voimalaitospolttoaineeksi.

Container logistic innovations in forest-energy sector: Markets, future service concepts and technical improvements

The report presents the results of the commercialization project called the Container logistic services for forest bioenergy. The project promotes new business that is emerging around overall container logistic services in the bioenergy sector. The results assess the European markets of the container logistics for biomass, enablers for new business creation and required service bundles for the concept. We also demonstrate the customer value of the container logistic services for different market segments. The concept analysis is based on concept mapping, quality function deployment process (QFD) and business network analysis. The business network analysis assesses key shareholders and their mutual connections. The performance of the roadside chipping chain is analysed by the logistic cost simulation, RFID system demonstration and freezing tests. The EU has set the renewable energy target to 20 % in 2020 of which Biomass could account for two-thirds. In the Europe, the production of wood fuels was 132.9 million solid-m3 in 2012 and production of wood chips and particles was 69.0 million solidm3. The wood-based chips and particle flows are suitable for container transportation providing market of 180.6 million loose- m3 which mean 4.5 million container loads per year. The intermodal logistics of trucks and trains are promising for the composite containers because the biomass does not freeze onto the inner surfaces in the unloading situations. The overall service concept includes several packages: container rental, container maintenance, terminal services, RFID-tracking service, and simulation and ERP-integration service. The container rental and maintenance would provide transportation entrepreneurs a way to increase the capacity without high investment costs. The RFID-concept would lead to better work planning improving profitability throughout the logistic chain and simulation supports fuel supply optimization.

Biohiilen tuotannon toimintaedellytykset Parikkalassa

Suomessa on sitouduttu kansainvälisiin päästövähennystavoitteisiin ja uusiutuvan ener-gian osuuden kasvattamiseen. Biohiili on erinomainen polttoainevaihtoehto kivihiili-voimalaitoksissa, sillä sitä voidaan käyttää suurellakin seososuudella ilman merkittäviä rakenteellisia muutoksia polttoaineen syöttölaitteistoihin tai kattilaan. Biohiiltä voidaan käyttää myös metallurgiassa pelkistimenä, maanparannusaineena ja hiilinieluna. Biohiilen raaka-aineena toimii energia- ja kuitupuuhake. Parikkalan lähialueella on hyödyn-nettävissä olevaa teknis-taloudellista metsäenergiapotentiaalia keskisuuren biojalostamon perustamista varten. Biohiilen teoreettinen markkinapotentiaali on valtava, mutta sen taloudelliset kannattavuusnäkymät ovat heikot nykyhintatasolla. Biohiilen kilpailukykyä heikentävät kivihiilen ja päästöoikeuksien alhaiset hinnat ja biohiilen korkeat tuotantokustannukset. Biohiilimarkkinoiden kehittymistä jarruttaa myös olemassa olevan tuotannon puute. Biohiilen käyttöönotto edellyttäisi kansainvälisiä tukitoimia tai kivihiilen hinnan kasvua.

Morfoanatomia e ontogênese do pericarpo de Manihot caerulescens Pohl e M. tripartita Müll. Arg. (Euphorbiaceae)

Manihot caerulescens e M. tripartita são espécies arbustivas de cerrado, conhecidas como mandioca-brava. Não são encontrados muitos trabalhos sobre estrutura do pericarpo de Euphorbiaceae e muitas das descrições morfológicas existentes apresentam interpretações dúbias, especialmente sobre a deiscência. O presente trabalho objetivou descrever a morfologia, anatomia e ontogênese do pericarpo das duas espécies de Manihot, comparando-as entre si e relacionando aspectos estruturais do pericarpo à deiscência. Verificou-se que o desenvolvimento do pericarpo enquadra-se em quatro estágios, típicos de frutos secos. Dois meristemas são formados: um subadaxial, que produz o mesocarpo interno; outro adaxial, que forma o endocarpo, homogêneo e colenquimatoso em M. caerulescens, e heterogêneo em M. tripartita, com fibroesclereídes gelatinosas externas e uma porção colenquimatosa interna. Observou-se a formação de tecido de separação, composto por parênquima laxo, em direção aos feixes dorsais dos três carpelos e aos septos, o qual é mais evidente em M. tripartita. Por fim, verificou-se variação na composição do estrato esclerenquimático: em M. caerulescens, há uma faixa de fibroesclereídes e uma de braquiesclereídes, ambas do mesocarpo; em M. tripartita, ocorrem essas duas faixas mesocárpicas, com maior espessura, acrescidas do endocarpo externo, também composto por fibroesclereídes. Os frutos de ambas as espécies são cápsulas, cujo tipo varia em função do desenvolvimento do tecido de separação e da amplitude do estrato esclerenquimático. Assim, M. caerulescens apresenta cápsulas indeiscentes, enquanto M. tripartita forma cápsulas septi-loculicidas, uma vez que a deiscência, embora passiva, ocorre nas regiões dorsais e em direção aos septos.

Chromosome number and secondary constriction variation in 51 accessions of a citrus germplasm bank

The mitotic chromosomes of 51 citrus accessions from the Centro Nacional de Pesquisa em Mandioca e Fruticultura Tropical, Cruz das Almas, BA, Brazil, were analyzed. The sample included representatives of 20 Citrus species, one of Poncirus and seven hybrids. All accessions showed 2n = 18 without any evidence of numerical variation. The most clearly variable karyotype feature was the number and position of secondary constrictions (SECs). In 19 accessions the SECs were not identified, mainly due to the degree of chromatin condensation. In the remainder they varied in number from one to three per karyotype. They were found in the proximal region of one of the three largest chromosome pairs, in the terminal/subterminal region of a smaller chromosome or, more seldom, terminally in a larger chromosome. Only in a few cases were such constrictions observed simultaneously in both homologues of the same chromosome pair. The high variability of this karyotype feature may be due to the activation of this region in the previous interphase but may also indicate a high structural variability and heterozygosity of citrus germplasms

Hunting for differentially expressed genes

Differentially expressed genes are usually identified by comparing steady-state mRNA concentrations. Several methods have been used for this purpose, including differential hybridization, cDNA subtraction, differential display and, more recently, DNA chips. Subtractive hybridization has significantly improved after the polymerase chain reaction was incorporated into the original method and many new protocols have been established. Recently, the availability of the well-known coding sequences for some organisms has greatly facilitated gene expression analysis using high-density microarrays. Here, we describe some of these modifications and discuss the benefits and drawbacks of the various methods corresponding to the main advances in this field.

Potential and Challenges of Analog Reconfigurable Computation in Modern and Future CMOS

In this work, the feasibility of the floating-gate technology in analog computing platforms in a scaled down general-purpose CMOS technology is considered. When the technology is scaled down the performance of analog circuits tends to get worse because the process parameters are optimized for digital transistors and the scaling involves the reduction of supply voltages. Generally, the challenge in analog circuit design is that all salient design metrics such as power, area, bandwidth and accuracy are interrelated. Furthermore, poor flexibility, i.e. lack of reconfigurability, the reuse of IP etc., can be considered the most severe weakness of analog hardware. On this account, digital calibration schemes are often required for improved performance or yield enhancement, whereas high flexibility/reconfigurability can not be easily achieved. Here, it is discussed whether it is possible to work around these obstacles by using floating-gate transistors (FGTs), and analyze problems associated with the practical implementation. FGT technology is attractive because it is electrically programmable and also features a charge-based built-in non-volatile memory. Apart from being ideal for canceling the circuit non-idealities due to process variations, the FGTs can also be used as computational or adaptive elements in analog circuits. The nominal gate oxide thickness in the deep sub-micron (DSM) processes is too thin to support robust charge retention and consequently the FGT becomes leaky. In principle, non-leaky FGTs can be implemented in a scaled down process without any special masks by using “double”-oxide transistors intended for providing devices that operate with higher supply voltages than general purpose devices. However, in practice the technology scaling poses several challenges which are addressed in this thesis. To provide a sufficiently wide-ranging survey, six prototype chips with varying complexity were implemented in four different DSM process nodes and investigated from this perspective. The focus is on non-leaky FGTs, but the presented autozeroing floating-gate amplifier (AFGA) demonstrates that leaky FGTs may also find a use. The simplest test structures contain only a few transistors, whereas the most complex experimental chip is an implementation of a spiking neural network (SNN) which comprises thousands of active and passive devices. More precisely, it is a fully connected (256 FGT synapses) two-layer spiking neural network (SNN), where the adaptive properties of FGT are taken advantage of. A compact realization of Spike Timing Dependent Plasticity (STDP) within the SNN is one of the key contributions of this thesis. Finally, the considerations in this thesis extend beyond CMOS to emerging nanodevices. To this end, one promising emerging nanoscale circuit element - memristor - is reviewed and its applicability for analog processing is considered. Furthermore, it is discussed how the FGT technology can be used to prototype computation paradigms compatible with these emerging two-terminal nanoscale devices in a mature and widely available CMOS technology.

Virtual Runtime Application Partitions for Resource Management in Massively Parallel Architectures

This thesis presents a novel design paradigm, called Virtual Runtime Application Partitions (VRAP), to judiciously utilize the on-chip resources. As the dark silicon era approaches, where the power considerations will allow only a fraction chip to be powered on, judicious resource management will become a key consideration in future designs. Most of the works on resource management treat only the physical components (i.e. computation, communication, and memory blocks) as resources and manipulate the component to application mapping to optimize various parameters (e.g. energy efficiency). To further enhance the optimization potential, in addition to the physical resources we propose to manipulate abstract resources (i.e. voltage/frequency operating point, the fault-tolerance strength, the degree of parallelism, and the configuration architecture). The proposed framework (i.e. VRAP) encapsulates methods, algorithms, and hardware blocks to provide each application with the abstract resources tailored to its needs. To test the efficacy of this concept, we have developed three distinct self adaptive environments: (i) Private Operating Environment (POE), (ii) Private Reliability Environment (PRE), and (iii) Private Configuration Environment (PCE) that collectively ensure that each application meets its deadlines using minimal platform resources. In this work several novel architectural enhancements, algorithms and policies are presented to realize the virtual runtime application partitions efficiently. Considering the future design trends, we have chosen Coarse Grained Reconfigurable Architectures (CGRAs) and Network on Chips (NoCs) to test the feasibility of our approach. Specifically, we have chosen Dynamically Reconfigurable Resource Array (DRRA) and McNoC as the representative CGRA and NoC platforms. The proposed techniques are compared and evaluated using a variety of quantitative experiments. Synthesis and simulation results demonstrate VRAP significantly enhances the energy and power efficiency compared to state of the art.

Intensification of hemicellulose hot-water extraction from spruce wood by parameter tuning

The growing population on earth along with diminishing fossil deposits and the climate change debate calls out for a better utilization of renewable, bio-based materials. In a biorefinery perspective, the renewable biomass is converted into many different products such as fuels, chemicals, and materials, quite similar to the petroleum refinery industry. Since forests cover about one third of the land surface on earth, ligno-cellulosic biomass is the most abundant renewable resource available. The natural first step in a biorefinery is separation and isolation of the different compounds the biomass is comprised of. The major components in wood are cellulose, hemicellulose, and lignin, all of which can be made into various end-products. Today, focus normally lies on utilizing only one component, e.g., the cellulose in the Kraft pulping process. It would be highly desirable to utilize all the different compounds, both from an economical and environmental point of view. The separation process should therefore be optimized. Hemicelluloses can partly be extracted with hot-water prior to pulping. Depending in the severity of the extraction, the hemicelluloses are degraded to various degrees. In order to be able to choose from a variety of different end-products, the hemicelluloses should be as intact as possible after the extraction. The main focus of this work has been on preserving the hemicellulose molar mass throughout the extraction at a high yield by actively controlling the extraction pH at the high temperatures used. Since it has not been possible to measure pH during an extraction due to the high temperatures, the extraction pH has remained a “black box”. Therefore, a high-temperature in-line pH measuring system was developed, validated, and tested for hot-water wood extractions. One crucial step in the measurements is calibration, therefore extensive efforts was put on developing a reliable calibration procedure. Initial extractions with wood showed that the actual extraction pH was ~0.35 pH units higher than previously believed. The measuring system was also equipped with a controller connected to a pump. With this addition it was possible to control the extraction to any desired pH set point. When the pH dropped below the set point, the controller started pumping in alkali and by that the desired set point was maintained very accurately. Analyses of the extracted hemicelluloses showed that less hemicelluloses were extracted at higher pH but with a higher molar-mass. Monomer formation could, at a certain pH level, be completely inhibited. Increasing the temperature, but maintaining a specific pH set point, would speed up the extraction without degrading the molar-mass of the hemicelluloses and thereby intensifying the extraction. The diffusion of the dissolved hemicelluloses from the wood particle is a major part of the extraction process. Therefore, a particle size study ranging from 0.5 mm wood particles to industrial size wood chips was conducted to investigate the internal mass transfer of the hemicelluloses. Unsurprisingly, it showed that hemicelluloses were extracted faster from smaller wood particles than larger although it did not seem to have a substantial effect on the average molar mass of the extracted hemicelluloses. However, smaller particle sizes require more energy to manufacture and thus increases the economic cost. Since bark comprises 10 – 15 % of a tree, it is important to also consider it in a biorefinery concept. Spruce inner and outer bark was hot-water extracted separately to investigate the possibility to isolate the bark hemicelluloses. It was showed that the bark hemicelluloses comprised mostly of pectic material and differed considerably from the wood hemicelluloses. The bark hemicelluloses, or pectins, could be extracted at lower temperatures than the wood hemicelluloses. A chemical characterization, done separately on inner and outer bark, showed that inner bark contained over 10 % stilbene glucosides that could be extracted already at 100 °C with aqueous acetone.

Espoon puhdistamolietteen käsittelymenetelmien selvitys Ämmässuon käsittelykeskukselle

Ravinteiden kierrätys yhä enemmän luonnonvaroja kuluttavassa yhteiskunnassa on noussut tärkeäksi. Hyötykäyttämällä luonnollisesti syntyvät orgaaniset virrat yhteiskunnasta voidaan kierrättää pellolta nostetut ravinteet takaisin. Tässä diplomityössä on tarkasteltu Helsingin seudun ympäristöpalveluiden toteuttamaa mädätetyn puhdistamolietteen käsittelyä ja pohdittu sen käsittelymahdollisuuksia erityisesti Ämmässuon käsittelykeskuksessa. Tarkastelussa on keskitytty kahteen yleisimpään kompostointimenetelmään, eli auma- ja tunnelikompostointiin. Kompostointimenetelmien tarkastelussa on pyritty löytämään optimaalinen tukiaine sekä prosessiaika käsiteltävälle lietteelle Ämmässuolla olemassa olleilla resursseilla. Tutkimuksessa toteutettiin käytännön pilot -kokeita sekä toteutettiin teoreettista prosessin parametrien laskentaa mukaan lukien kustannukset ja resurssit. Tutkimuksen perusteella voidaan todeta, että kyseisen tyyppisellä käsittelyalueella tunneli-kompostointi on näillä parametreilla testattuna paras vaihtoehto. Menetelmällä voidaan saavuttaa nopeampi käsittelyaika sekä vähentää kompostoinnista aiheutuvia hajuhaittoja ympäristöön. Tukiaineseoksessa voidaan korvata yleisestikin käytetty turve vastaanotettavalla lehti-puru viherjäteseoksella sekä risuhakkeella ja prosessiaika on noin 12 -16 viikkoa. Käsittelyn kustannukset verrattuna tämän hetkiseen käsittelyyn Metsäpirtissä eivät olleet merkittävästi suuremmat ja ympäristövaikutusarvioinnin perusteella syntypaikkaa lähellä oleva käsittelyalue sekä prosessin pienemmät vaikutukset tuovat ympäristöedun käsittelylle Ämmässuolla.

Rankapuun ja -hakkeen laadun vaihtelu terminaalivarastoinnissa

Työssä tutkittiin polttoaineterminaalissa varastoitavan puupolttoaineen laadunmuutoksia. Tutkimuksessa tarkasteltiin hakettamattomien rankapuiden ja rankapuuhakkeen kosteuden ja lämpöarvon muutosta. Myös kuiva-ainetappiota tutkittiin aikaisempien tutkimusten perusteella. Tutkimusaineisto kerättiin Etelä-Savon Energian polttoaineterminaaleista. Kosteus-pitoisuuksia mitattiin Hydromette M2050 -pikakosteusmittarilla ja uunikuivaus-menetelmällä standardin SFS-EN 14774 mukaisesti. Tutkimuksessa huomattiin pikakosteusmittarin toimivan riittävän luotettavalla tasolla rankapuiden mittauksissa, mutta hakkeen mittauksissa mittari osoittautui toimimattomaksi. Varastointiaika ei vaikuttanut polttoaineiden lämpöarvoihin, mutta kosteuspitoisuus vaihteli suuresti. Tutkimustuloksista pääteltiin rangan kuivuvan terminaalivarastossa ja hakkeen kosteuden pysyvän vakiona. Energiasisällön puolesta rankapuuta voidaan varastoida yli 2 vuotta, mutta hakkeen varastointiaika tulisi pitää mahdollisimman lyhyenä.

In vitro culture and characterization of alveolar bone osteoblasts isolated from type 2 diabetics

In order to understand the mechanisms of poor osseointegration following dental implants in type 2 diabetics, it is important to study the biological properties of alveolar bone osteoblasts isolated from these patients. We collected alveolar bone chips under aseptic conditions and cultured them in vitro using the tissue explants adherent method. The biological properties of these cells were characterized using the following methods: alkaline phosphatase (ALP) chemical staining for cell viability, Alizarin red staining for osteogenic characteristics, MTT test for cell proliferation, enzyme dynamics for ALP contents, radio-immunoassay for bone gla protein (BGP) concentration, and ELISA for the concentration of type I collagen (COL-I) in the supernatant. Furthermore, we detected the adhesion ability of two types of cells from titanium slices using non-specific immunofluorescence staining and cell count. The two cell forms showed no significant difference in morphology under the same culture conditions. However, the alveolar bone osteoblasts received from type 2 diabetic patients had slower growth, lower cell activity and calcium nodule formation than the normal ones. The concentration of ALP, BGP and COL-I was lower in the supernatant of alveolar bone osteoblasts received from type 2 diabetic patients than in that received from normal subjects (P < 0.05). The alveolar bone osteoblasts obtained from type 2 diabetic patients can be successfully cultured in vitro with the same morphology and biological characteristics as those from normal patients, but with slower growth and lower concentration of specific secretion and lower combining ability with titanium than normal ones.

FÉCULA E FARELO DE MANDIOCACOMO SUBSTRATO NA PRODUÇÃO DE CICLODEXTRINAS

Ciclodextrinas (CDs) são oligossacarídeos cíclicos, não redutores, capazes de formar complexos de inclusão com outras moléculas, modificando suas características químicas e físicas. São de interesse industrial, mas o fator limitante para sua utilização ainda é o alto custo de produção. Devido à sua pureza e ao teor de amilopectina, a fécula de mandioca se apresenta como substrato potencial para a produção de CDs, tendo mais de 95% de amido. Outro substrato potencial é o farelo, resíduo da extração da fécula de mandioca, com cerca de 70% de amido e custo consideravelmente inferior ao da fécula. O objetivo deste trabalho foi avaliar a produção de CDs usando fécula e farelo de mandioca como substratos, empregando ciclodextrina glucosiltransferase (CGTase; E. C. 2.4.1.19) proveniente de Bacillus macerans. A conversão do amido em a-CDs foi de 19% para a fécula e 21% para o farelo. Para b-CDs, os valores foram de 27% e 15% para a fécula e o farelo, respectivamente. A proporção de a: b-CDs produzidas a partir da fécula foi de 1,0:1,4, enquanto que para o farelo foi de 1,5:1,0. Após 4 horas a 50ºC houve considerável perda da atividade enzimática, indicando tendência de estabilização da reação.

INFLUÊNCIA DE ENZIMAS DE MACERAÇÃO NA PRODUÇÃO DE PUBA

Pubagem é a fermentação natural de raízes de mandioca para produção da puba, um alimento popular do Nordeste do Brasil. Além da fermentação lática predominante, os microrganismos também causam o amolecimento das raízes, importante para a obtenção de um produto de boa qualidade. O objetivo deste trabalho foi detectar a presença de enzimas de maceração e verificar a influência da adição de preparados comerciais de celulase e pectinase na pubagem. Constatou-se que as atividades de celulases, xilanase e poligalacturonase aumentaram durante a fermentação natural. Ao se adicionar preparados comerciais de celulase e pectinase este aumento foi maior do que o esperado pela fermentação natural. A adição desses preparados enzímicos acelerou a fermentação aumentando a acidez e reduzindo o pH mais rapidamente do que o tratamento-testemunha.