Improving discovery in the life sciences using semantic Web technologies and linked data: design principles for life sciences knowledge organization systems

Dissertation presented to obtain the Ph.D degree in Bioinformatics

A credibilidade da informação na web: estudo de práticas informacionais em contexto escolar

Apresentam-se os resultados parcelares de um estudo destinado a promover um melhor conhecimento das estratégias que os jovens em idade escolar (12-18 anos) consideram relevantes para avaliar as fontes de informação disponíveis na Internet. Para o efeito, foi aplicado um inquérito distribuído a uma amostra de 195 alunos de uma escola do 3o ciclo e outra do ensino secundário de um concelho do distrito do Porto. São apresentados e discutidos os resultados acerca da perceção destes alunos quanto aos critérios a aplicar na avaliação das fontes de informação disponíveis na Internet, na vertente da credibilidade. Serão apresenta- das as práticas que os jovens declaram ter relativamente ao uso de critérios de autoria, originalidade, estrutura, atualidade e de comparação para avaliar a credibilidade das fontes de informação. Em complemento, estes resultados serão comparados e discutidos com as perceções que os mesmos inquiridos demonstram possuir relativamente aos elementos que compõem cada um destes critérios. A análise dos dados obtidos é enquadrada e sustentada numa revisão da literatura acerca do conceito de credibilidade, aplicado às fontes de informação disponíveis na Internet. São ainda abordados alguns tópicos relaciona- dos com a inclusão de estratégias de avaliação da credibilidade da informação digital no modelo Big6, um dos modelos de desenvolvimento de competências de literacia da informação mais conhecidos e utilizados nas bibliotecas escolares portuguesas.

Declarative approach to data extraction of web pages

Thesis submitted to Faculdade de Ciências e Tecnologia of the Universidade Nova de Lisboa, in partial fulfilment of the requirements for the degree of Master in Computer Science

História e património nos sítios web das câmaras municipais: a sugestão de boas prática e o evitar de maus procedimentos de divulgação

Trabalho de Projecto apresentado para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Práticas Culturais para Municípios

Simulador de sistema de informação ao público para rede de transportes metro-ferroviária

O aumento da complexidade e das funcionalidades a fornecer pelos equipamentos de apoio à exploração de sistemas de redes de transporte criou um novo paradigma no qual vários intervenientes são chamados a fornecer módulos. Estes devem comunicar entre si de forma transparente, não devendo haver limitações colocadas pela tecnologia utilizada ou pelo facto de serem de fabricantes distintos. Este projeto de dissertação resulta de uma proposta da empresa EFACEC para a construção de um Simulador de um Sistema de Informação ao Público numa rede de transportes metro-ferroviária, que utilize como interface para comunicação com a plataforma de gestão EFARail a tecnologia de Web Services. Nesta dissertação faz-se um levantamento dos principais equipamentos utilizados em Sistemas de Informação ao Público e das funcionalidades disponibilizadas, assim como dastecnologias de Web Services que permitem responder aos requisitos e funcionalidades gerais do sistema. A aplicação desenvolvida permite a simulação duma rede de equipamentos visuais e sonoros de informação ao público que compõem uma linha metro-ferroviária. Desta forma é possível testar novos módulos sem necessidade de uma integração em ambiente real. Com isto pretende-se otimizar o processo de desenvolvimento, diminuindo os custos associados ao teste dos sub-sistemas que compõem a solução.

Web TV. Análise e melhores práticas em OCS nacionais e internacionais

Trabalho de projecto para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Novos Media e Práticas Web

Optimizações guiadas por dados reais em linguagens de domínio específico para a web

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do Grau de Mestre em Engenharia Informática

Combining open and closed world reasoning for the semantic web

Dissertação para obtenção do Grau de Doutor em Informática

The influence of task design on upper limb muscles fatigue during low-load repetitive work: A systematic review

Ergonomic interventions such as increased scheduled breaks or job rotation have been proposed to reduce upper limb muscle fatigue in repetitive low-load work. This review was performed to summarize and analyze the studies investigating the effect of job rotation and work-rest schemes, as well as, work pace, cycle time and duty cycle, on upper limb muscle fatigue. The effects of these work organization factors on subjective fatigue or discomfort were also analyzed. This review was based on relevant articles published in PubMed, Scopus and Web of Science. The studies included in this review were performed in humans and assessed muscle fatigue in upper limbs. 14 articles were included in the systematic review. Few studies were performed in a real work environment and the most common methods used to assess muscle fatigue were surface electromyography (EMG). No consistent results were found related to the effects of job rotation on muscle activity and subjective measurements of fatigue. Rest breaks had some positive effects, particularly in perceived discomfort. The increase in work pace reveals a higher muscular load in specific muscles. The duration of experiments and characteristics of participants appear to be the factors that most have influenced the results. Future research should be focused on the improvement of the experimental protocols and instrumentation, in order to the outcomes represent adequately the actual working conditions. Relevance to industry: Introducing more physical workload variation in low-load repetitive work is considered an effective ergonomic intervention against muscle fatigue and musculoskeletal disorders in industry. Results will be useful to identify the need of future research, which will eventually lead to the adoption of best industrial work practices according to the workers capabilities.

Development of paper-based color test-strip for drug detection in aquatic environment: Application to oxytetracycline

The wide use of antibiotics in aquaculture has led to the emergence of resistant microbial species. It should be avoided/minimized by controlling the amount of drug employed in fish farming. For this purpose, the present work proposes test-strip papers aiming at the detection/semi-quantitative determination of organic drugs by visual comparison of color changes, in a similar analytical procedure to that of pH monitoring by universal pH paper. This is done by establishing suitable chemical changes upon cellulose, attributing the paper the ability to react with the organic drug and to produce a color change. Quantitative data is also enabled by taking a picture and applying a suitable mathematical treatment to the color coordinates given by the HSL system used by windows. As proof of concept, this approach was applied to oxytetracycline (OXY), one of the antibiotics frequently used in aquaculture. A bottom-up modification of paper was established, starting by the reaction of the glucose moieties on the paper with 3-triethoxysilylpropylamine (APTES). The so-formed amine layer allowed binding to a metal ion by coordination chemistry, while the metal ion reacted after with the drug to produce a colored compound. The most suitable metals to carry out such modification were selected by bulk studies, and the several stages of the paper modification were optimized to produce an intense color change against the concentration of the drug. The paper strips were applied to the analysis of spiked environmental water, allowing a quantitative determination for OXY concentrations as low as 30 ng/mL. In general, this work provided a simple, method to screen and discriminate tetracycline drugs, in aquaculture, being a promising tool for local, quick and cheap monitoring of drugs.

Sulfadiazine-selective determination in aquaculture environment: Selective potentiometric transduction by neutral or charged ionophores

Solid-contact sensors for the selective screening of sulfadiazine (SDZ) in aquaculture waters are reported. Sensor surfaces were made from PVC membranes doped with tetraphenylporphyrin-manganese(III) chloride, α-cyclodextrin, β-cyclodextrin, or γ-cyclodextrin ionophores that were dispersed in plasticizer. Some membranes also presented a positive or a negatively charged additive. Phorphyrin-based sensors relied on a charged carrier mechanism. They exhibited a near-Nernstian response with slopes of 52 mV decade−1 and detection limits of 3.91 × 10−5 mol L−1. The addition of cationic lipophilic compounds to the membrane originated Nernstian behaviours, with slopes ranging 59.7–62.0 mV decade−1 and wider linear ranges. Cyclodextrin-based sensors acted as neutral carriers. In general, sensors with positively charged additives showed an improved potentiometric performance when compared to those without additive. Some SDZ selective membranes displayed higher slopes and extended linear concentration ranges with an increasing amount of additive (always <100% ionophore). The sensors were independent from the pH of test solutions within 2–7. The sensors displayed fast response, always <15 s. In general, a good discriminating ability was found in real sample environment. The sensors were successfully applied to the fast screening of SDZ in real waters samples from aquaculture fish farms. The method offered the advantages of simplicity, accuracy, and automation feasibility. The sensing membrane may contribute to the development of small devices allowing in locus measurements of sulfadiazine or parent-drugs.

Staphylococcus aureus ampicillin-resistant from the odontological clinic environment

The aim of this research was to evaluate the prevalence of Sthaphylococcus spp. and S. aureus in the odontological clinic environment (air), their production of beta-lactamase and antibacterial susceptibility to the major antibiotics utilized in medical particle. During 12 months of samples collect were isolated 9775 CFU by MSA medium suggesting a high amount of Staphylococcus spp. in the clinic environment which can appear through aerosols. A total of 3149 colonies (32.2%) were suggestive of pathogenic staphylococci. Gram coloration, catalase test, colony-mallow growing on chromogenic medium, and coagulase test confirmed the identity of 44 (0.45%) S. aureus isolates. Of these, 35 isolates (79.5%) showed production of beta-lactamase by CefinaseTM discs and resistance to ampicillin, erythromycin (7 isolates) and tetracycline (1 isolate) suggesting the existence of multiresistant isolates. The evaluation of the oxacillin MIC by Etest® assays showed susceptibility patterns suggesting the inexistence of the mecA gene in chromosomal DNA. These results point out to the need of a larger knowledge on the contamination means and propagation of this microorganism into the odontological clinic.