Ex situ respiration rates measured in water column samples during the James Cook cruise JC087 in June 2013

Oxygen concentration and rate of change of oxygen were measured using the Unisense Oxygen Microsensor System. Water from different depth was taken from CTD attached niskin bottle. Measurements were conducted in 2 ml vials provided by Unisense and lasted for a minimum of two minutes after a stable rate was achieved. The sampling interval was 6 seconds. Transport containers, tubes and vials for measurements were covered with light proof black foil for dark-measurements.

Vertical distribution and abundance of small zooplankton from the James Cook cruise JC087

Zooplankton samples were collected daily at the PAP site, using a Multinet of the type Midi with 50 µm nets. 5 depth strata (1000-500, 500-300, 300-100, 100-50 and 50-0 m) were collected at each sampling. The samples were preserved in 2% borax bufferred formalin. Zooplankton were identified on a species / genus level including different life-stages and eggs; at least 400 individuals were counted for each sample. When present, 10 individuals of each species and life-stages (for copepods) were measured for their prosome or total length.

Carbon concentration and sinking velocity of particles measured during the James Cook cruise JC087, March 2013

Sinking organic particles were collected from the Porcupine Abyssal Plain in 2013. Collection was done using a marine snow catcher (MSC), which is essentially a large (95 L) settling column. The marine snow catcher is deployed to one depth, the water trapped inside and then brought to the surface and left to stand on deck for 2 hours during which time the particles settle down (or up) the MSC depending on their settling rate. The particles are then collected and due to position of collection from the snow catcher are determined as fast or slow sinking particles. Some fluxes are negative as they were positively buoyant and not sinking.