Trans-Ancestral Studies Fine Map the SLE-Susceptibility Locus TNFSF4

We previously established an 80 kb haplotype upstream of TNFSF4 as a susceptibility locus in the autoimmune disease SLE. SLE-associated alleles at this locus are associated with inflammatory disorders, including atherosclerosis and ischaemic stroke. In Europeans, the TNFSF4 causal variants have remained elusive due to strong linkage disequilibrium exhibited by alleles spanning the region. Using a trans-ancestral approach to fine-map the locus, utilising 17,900 SLE and control subjects including Amerindian/Hispanics (1348 cases, 717 controls), African-Americans (AA) (1529, 2048) and better powered cohorts of Europeans and East Asians, we find strong association of risk alleles in all ethnicities; the AA association replicates in African-American Gullah (152,122). The best evidence of association comes from two adjacent markers: rs2205960-T (P = 1.71×10-34, OR = 1.43[1.26-1.60]) and rs1234317-T (P = 1.16×10-28, OR = 1.38[1.24-1.54]). Inference of fine-scale recombination rates for all populations tested finds the 80 kb risk and non-risk haplotypes in all except African-Americans. In this population the decay of recombination equates to an 11 kb risk haplotype, anchored in the 5′ region proximal to TNFSF4 and tagged by rs2205960-T after 1000 Genomes phase 1 (v3) imputation. Conditional regression analyses delineate the 5′ risk signal to rs2205960-T and the independent non-risk signal to rs1234314-C. Our case-only and SLE-control cohorts demonstrate robust association of rs2205960-T with autoantibody production. The rs2205960-T is predicted to form part of a decameric motif which binds NF-κBp65 with increased affinity compared to rs2205960-G. ChIP-seq data also indicate NF-κB interaction with the DNA sequence at this position in LCL cells. Our research suggests association of rs2205960-T with SLE across multiple groups and an independent non-risk signal at rs1234314-C. rs2205960-T is associated with autoantibody production and lymphopenia. Our data confirm a global signal at TNFSF4 and a role for the expressed product at multiple stages of lymphocyte dysregulation during SLE pathogenesis. We confirm the validity of trans-ancestral mapping in a complex trait. © 2013 Manku et al.

Geological and fossil evidence.

La historia de la Tierra y de las diferentes formas de vida sobre ella se pueden conocer mediante el estudio de las rocas, los estratos, los fósiles y los restos animales y humanos conservados. Al final del libro hay una pequeña bibliografía y direcciones de páginas web.

Barcelona : pocket map and guide.

Guía de bolsillo para descubrir Barcelona y sus mejores museos, monumentos, restaurantes, bares y tiendas, horarios, y datos sobre el transporte. Repleta de palabras, fotos, mapas para ayudar al visitante en la localización de más de doscientos lugares de interés.

Seville and Andalusia : pocket map and guide.

Guía de bolsillo para descubrir Sevilla y sus mejores museos, monumentos, restaurantes, bares y tiendas, horarios, y datos sobre el transporte. Repleta de palabras, fotos, mapas para ayudar al visitante en la localización de más de doscientos lugares de interés.

London: pocket map and guide.

Guía de bolsillo para descubrir Londres y sus mejores museos, monumentos, restaurantes, bares y tiendas, horarios, y datos sobre el transporte. Repleta de palabras, fotos, mapas para ayudar al visitante en la localización de más de doscientos lugares de interés.

Madrid : pocket map and guide.

Guía de bolsillo para descubrir Madrid y sus mejores museos, monumentos, restaurantes, bares y tiendas, horarios, y datos sobre el transporte. Repleta de palabras, fotos, mapas para ayudar al visitante en la localización de más de doscientos lugares de interés.

Comparison of speech processor MAP minimum (T) and maximum (C) levels with psychophysical thresholds and maximum acceptable loudness levels in users of the Nucleus 22 cochlear implant system

This paper discusses the Nucleus 22 cochlear implant.

Comparison of MAP kinases in the proliferation of chick utricular epithelial cells

Levels of activation of MAP kinase pathways and effects of inhibiting these pathways were examined in chick utricular epithelial cultures in order to determine the role of these pathways in proliferation.

Use of fused airborne scanning laser altimetry and digital map data for urban flood modelling

Flood modelling of urban areas is still at an early stage, partly because until recently topographic data of sufficiently high resolution and accuracy have been lacking in urban areas. However, Digital Surface Models (DSMs) generated from airborne scanning laser altimetry (LiDAR) having sub-metre spatial resolution have now become available, and these are able to represent the complexities of urban topography. The paper describes the development of a LiDAR post-processor for urban flood modelling based on the fusion of LiDAR and digital map data. The map data are used in conjunction with LiDAR data to identify different object types in urban areas, though pattern recognition techniques are also employed. Post-processing produces a Digital Terrain Model (DTM) for use as model bathymetry, and also a friction parameter map for use in estimating spatially-distributed friction coefficients. In vegetated areas, friction is estimated from LiDAR-derived vegetation height, and (unlike most vegetation removal software) the method copes with short vegetation less than ~1m high, which may occupy a substantial fraction of even an urban floodplain. The DTM and friction parameter map may also be used to help to generate an unstructured mesh of a vegetated urban floodplain for use by a 2D finite element model. The mesh is decomposed to reflect floodplain features having different frictional properties to their surroundings, including urban features such as buildings and roads as well as taller vegetation features such as trees and hedges. This allows a more accurate estimation of local friction. The method produces a substantial node density due to the small dimensions of many urban features.