Os gêneros Lejeunea e Microlejeunea (Lejeuneaceae) na Estação Científica Ferreira Penna, estado do Pará, Brasil, e novas ocorrências

Em um inventário de Lejeuneaceae (Hepaticae) na Estação Científica Ferreira Penna, município de Melgaço, Pará, foi observada a ocorrência de Lejeunea caespitosa Lindenb. ex Gottsche, Lindenb. & Nees, Lejeunea flava (Swartz) Nees, Lejeunea tapajosensis Spruce, Microlejeunea acutifolia Stephani e Microlejeunea epiphylla Bischler, destacando Microlejeunea acutifolia como nova ocorrência para o Brasil e Microlejeunea epiphylla mencionada pela primeira vez para o Estado do Pará. Todas as espécies estão descritas e ilustradas e é apresentada uma chave artificial para a separação das mesmas, assim como comentários adicionais.

Influência do tipo de alimento e da temperatura na evacuação gástrica da piranha caju (Pygocentrus nattereri) em condições experimentais

taxa de evacuação gástrica é uma variável importante para estimar o consumo diário de alimento e portanto a pressão de predação que um piscívoro exerce sobre as presas. Esta taxa pode ser influenciada pela temperatura, tamanho do predador e pelo tipo de alimento. Neste trabalho medimos experimentalmente os efeitos que estas três variáveis exercem sobre a evacuação gástrica de Pygocentrus nattereri, um dos principais piscívoros da Amazônia. Para isso foram utilizadas temperaturas variando de 27° a 31°C e os seguintes itens alimentares: músculo e nadadeira de Semaprochilodus insignis e gafanhoto da espécie Paulinia sp. Estes alimentos compõem a dieta silvestre da piranha. O tamanho da piranha não influenciou na evacuação gástrica. Músculos obtiveram uma taxa de evacuação gástrica de 18,3% h -1, enquanto que nadadeira e gafanhoto obtiveram uma taxa média de 10,7% h -1. O efeito da temperatura foi mais pronunciado quando o item alimentar era músculo do que com nadadeira e insetos.

Public service culture collections of microorganisms: are they important for biotechnology?

Microbiology as a scientific discipline recognised the need to preserve microorganisms for scientific studies establishing from its very beginning research culture collections (CC). Later on, to better serve different scientific fields and bioindustries with the increasing number of strains of scientific, medical, ecological and biotechnological importance public service CC were established with the specific aims to support their user communities. Currently, the more developed public service CC are recognised as microBiological Resources Centres (mBRC). mBRC are considered to be one of the key elements for sustainable international scientific infrastructure, which is necessary to underpin successful delivery of the benefits of biotechnology, whether within the health sector, the industrial sector or other sectors, and in turn ensure that these advances help drive economic growth. In more detail, mBRCs are defined by Organisation for Economic Co-operation and Development (OECD) as service providers and repositories of the living cells, genomes of organisms, and information relating to heredity and functions of biological systems. mBRCs contain collections of culturable organisms (e.g., microorganisms, plant, animal cells), replicable parts of these (e.g. genomes, plasmids, virus, cDNAs), viable but not yet culturable organisms, cells and tissues, as well as database containing molecular, physiological and structural information relevant to these collections and related bioinformatics. Thus mBRCs are fundamental to harnessing and preserving the world’s microbial biodiversity and genetic resources and serve as an essential element of the infrastructure for research and development. mBRCs serve a multitude of functions and assume a range of shapes and forms. Some are large national centres performing a comprehensive role providing access to diverse organisms. Other centres play much narrower, yet important, roles supplying limited but crucial specialised resources. In the era of the knowledge-based bio-economy mBRCs are recognised as vital element to underpinning the biotechnology.

Simultaneous measurements of the tt¯, W+W−, and Z/γ∗→ττ production cross-sections in pp collisions at s√=7 TeV with the ATLAS detector

Simultaneous measurements of the tt¯, W+W−, and Z/γ∗→ττ production cross-sections using an integrated luminosity of 4.6 fb−1 of pp collisions at s√=7 TeV collected by the ATLAS detector at the LHC are presented. Events are selected with two high transverse momentum leptons consisting of an oppositely charged electron and muon pair. The three processes are separated using the distributions of the missing transverse momentum of events with zero and greater than zero jet multiplicities. Measurements of the fiducial cross-section are presented along with results that quantify for the first time the underlying correlations in the predicted and measured cross-sections due to proton parton distribution functions. These results indicate that the correlated NLO predictions for tt¯ and Z/γ∗→ττ significantly underestimate the data, while those at NNLO generally describe the data well. The full cross-sections are measured to be σ(tt¯)=181.2±2.8+9.7−9.5±3.3±3.3 pb, σ(W+W−)=53.3±2.7+7.3−8.0±1.0±0.5 pb, and σ(Z/γ∗→ττ)=1174±24+72−87±21±9 pb, where the cited uncertainties are due to statistics, systematic effects, luminosity and the LHC beam energy measurement, respectively.

Measurement of the forward-backward asymmetry of electron and muon pair-production in pp collisions at s√ = 7 TeV with the ATLAS detector

This paper presents measurements from the ATLAS experiment of the forward-backward asymmetry in the reaction pp→Z/γ∗→l+l−, with l being electrons or muons, and the extraction of the effective weak mixing angle. The results are based on the full set of data collected in 2011 in pp collisions at the LHC at s√ = 7 TeV, corresponding to an integrated luminosity of 4.8 fb−1. The measured asymmetry values are found to be in agreement with the corresponding Standard Model predictions. The combination of the muon and electron channels yields a value of the effective weak mixing angle of 0.2308±0.0005(stat.)±0.0006(syst.)±0.0009(PDF), where the first uncertainty corresponds to data statistics, the second to systematic effects and the third to knowledge of the parton density functions. This result agrees with the current world average from the Particle Data Group fit.

Measurement of the inclusive jet cross-section in proton--proton collisions at s√=7 TeV using 4.5 fb−1 of data with the ATLAS detector

The inclusive jet cross-section is measured in proton--proton collisions at a centre-of-mass energy of 7 TeV using a data set corresponding to an integrated luminosity of 4.5 fb−1 collected with the ATLAS detector at the Large Hadron Collider in 2011. Jets are identified using the anti-kt algorithm with radius parameter values of 0.4 and 0.6. The double-differential cross-sections are presented as a function of the jet transverse momentum and the jet rapidity, covering jet transverse momenta from 100 GeV to 2 TeV. Next-to-leading-order QCD calculations corrected for non-perturbative effects and electroweak effects, as well as Monte Carlo simulations with next-to-leading-order matrix elements interfaced to parton showering, are compared to the measured cross-sections. A quantitative comparison of the measured cross-sections to the QCD calculations using several sets of parton distribution functions is performed.

Measurement of the production and lepton charge asymmetry of W bosons in Pb plus Pb collisions at root s(NN)=2.76 TeV with the ATLAS detec

A measurement of W boson production in lead-lead collisions at sNN−−−√=2.76 TeV is presented. It is based on the analysis of data collected with the ATLAS detector at the LHC in 2011 corresponding to an integrated luminosity of 0.14 nb−1 and 0.15 nb−1 in the muon and electron decay channels, respectively. The differential production cross-sections and lepton charge asymmetry are each measured as a function of the average number of participating nucleons ⟨Npart⟩ and absolute pseudorapidity of the charged lepton. The results are compared to predictions based on next-to-leading-order QCD calculations. These measurements are, in principle, sensitive to possible nuclear modifications to the parton distribution functions and also provide information on scaling of W boson production in multi-nucleon systems.

Measurement of three-jet production cross-sections in pp collisions at 7 TeV centre-of-mass energy using the ATLAS detector

Double-differential three-jet production cross-sections are measured in proton--proton collisions at a centre-of-mass energy of s√=7TeV using the ATLAS detector at the Large Hadron Collider. The measurements are presented as a function of the three-jet mass (mjjj), in bins of the sum of the absolute rapidity separations between the three leading jets (|Y∗|). Invariant masses extending up to 5 TeV are reached for 8<|Y∗|<10. These measurements use a sample of data recorded using the ATLAS detector in 2011, which corresponds to an integrated luminosity of 4.51fb−1. Jets are identified using the anti-kt algorithm with two different jet radius parameters, R=0.4 and R=0.6. The dominant uncertainty in these measurements comes from the jet energy scale. Next-to-leading-order QCD calculations corrected to account for non-perturbative effects are compared to the measurements. Good agreement is found between the data and the theoretical predictions based on most of the available sets of parton distribution functions, over the full kinematic range, covering almost seven orders of magnitude in the measured cross-section values.

Emergência de plântulas de Astrocaryum aculeatum G. May. em função da temperatura e do período de embebição das sementes

O presente trabalho teve por objetivo avaliar a emergência de plântulas de Astrocaryum aculeatum a partir de sementes submetidas a diferentes temperaturas e períodos de embebição. O delineamento experimental foi inteiramente casualizado, em esquema fatorial 4 (temperaturas de embebição em água: 25ºC, 30ºC, 35ºC e 40ºC) X 3 (períodos de embebição: 2, 4 e 6 dias), com testemunha (sem embebição) e com quatro repetições. As semeaduras foram realizadas em viveiro. A emergência e o índice de velocidade de emergência só diferiram entre a testemunha e os tratamentos aplicados, independentes do período e da temperatura, com resultados favoráveis para a embebição das sementes. O tempo médio de emergência apresentou efeito de interação significativo, destacando-se a utilização da temperatura de embebição de 40ºC, associada ao período de 4 dias, que proporcionou um menor tempo médio (163 dias). O tempo inicial de emergência foi menor na temperatura de 35ºC (80 dias), enquanto o tempo final de emergência não apresentou diferença entre as médias. Sementes embebidas por 2 dias apresentaram 50% de sementes mortas ao final do experimento, enquanto as embebidas por 4 dias, apenas 38%. A emergência de plântulas de A. aculeatum foi favorecida pela embebição, independente da temperatura e do período utilizados.

Prediction of drug targets in human pathogens

The identification of new and druggable targets in bacteria is a critical endeavour in pharmaceutical research of novel antibiotics to fight infectious agents. The rapid emergence of resistant bacteria makes today's antibiotics more and more ineffective, consequently increasing the need for new pharmacological targets and novel classes of antibacterial drugs. A new model that combines the singular value decomposition technique with biological filters comprised of a set of protein properties associated with bacterial drug targets and similarity to protein-coding essential genes of E. coli has been developed to predict potential drug targets in the Enterobacteriaceae family [1]. This model identified 99 potential target proteins amongst the studied bacterial family, exhibiting eight different functions that suggest that the disruption of the activities of these proteins is critical for cells. Out of these candidates, one was selected for target confirmation. To find target modulators, receptor-based pharmacophore hypotheses were built and used in the screening of a virtual library of compounds. Postscreening filters were based on physicochemical and topological similarity to known Gram-negative antibiotics and applied to the retrieved compounds. Screening hits passing all filters were docked into the proteins catalytic groove and 15 of the most promising compounds were purchased from their chemical vendors to be experimentally tested in vitro. To the best of our knowledge, this is the first attempt to rationalize the search of compounds to probe the relevance of this candidate as a new pharmacological target.

As espécies de Croton L. sect. Cyclostigma Griseb. e Croton L. sect. Luntia (Raf.) G. L. Webster subsect. Matourenses G. L. Webster (Euphorbiaceae s.s.) ocorrentes na Amazônia brasileira

Como parte de uma revisão taxonômica das espécies de Croton L. na Amazônia brasileira, estudou-se as seguintes espécies de Croton sect. Cyclostigma Griseb. e Croton sect. Luntia (Raf.) G. L. Webster subsect. Matourenses G. L. Webster: Croton urucurana Baill., C. draconoides Müll. Arg., C. trombetensis R. Secco, P. E. Berry & N.A. Rosa, C. sampatik Müll. Arg., C. palanostigma Kl., C. pullei Lanj. e C. matourensis Aubl. O estudo foi baseado em trabalho de campo realizado nos Estados do Pará e Maranhão, e em material depositado nos herbários IAN, INPA, MG e RB, incluindo tipos. Algumas dessas espécies, como C. urucurana, C. draconoides, C. palanostigma e C. sampatik , são frequentemente encontradas nos herbários com identificações equivocadas. São discutidas a posição taxonômica das espécies nas seções e suas afinidades, e uma chave dicotômica e ilustrações foram elaboradas para um melhor entendimento dos táxons.

Acmella marajoensis G.A.R. Silva & J.U.M. Santos: uma nova espécie de Asteraceae para a Amazônia brasileira

Em decorrência dos estudos na subtribo Ecliptinae da Amazônia brasileira, é descrita uma nova espécie, Acmella marajoensis G.A.R. Silva & J.U.M. Santos. Até o presente momento, a espécie é considerada como endêmica da Ilha do Marajó. São apresentados diagnose em latim, descrição detalhada, comentários taxonômicos e ilustrações.

Analysis of a Local HIV-1 Epidemic in Portugal Highlights Established Transmission of non-B and -G Subtypes

Existing data supports Portugal as the Western Europe country with highest HIV-1 subtype diversity. However, detailed phylogenetic studies of Portuguese HIV-1 epidemics are still scarce. Thus, our main goal was to analyze the phylodynamics of a local HIV-1 infection in the Portuguese region of Minho. Molecular epidemiological analysis was applied to data from 289 HIV-1 infected individuals followed in the reference Hospital of the province of Minho, Portugal, in which isolated viruses had been sequenced between 2000 and 2012. Viruses of the G (29.1%) and B (27.0%) subtypes were the most frequent, followed by recombinant forms (17.6%), C (14.5%), F1 (7.3%) and A1 (4.2%) subtypes. Multinomial logistic regression revealed that the odds of being infected with A1 and F1 subtype increased over the years when compared with B, G, C or recombinant viruses. As expected, polyphyletic patterns suggesting multiple and old introductions of subtypes B and G were found. However, transmission clusters of non-B and -G viruses among native individuals were also found with the dates of the most recent common ancestor estimated to the early 2000s. Our study supports that the HIV-1 subtype diversity in the Portuguese region of Minho is high and has been increasing in a manner that is apparently driven by factors other than immigration and international travel. Infections with A1 and F1 viruses in the region of Minho are becoming established and were mainly found in sexually transmitted clusters, reinforcing the need for more efficacious control measures targeting this infection route.

Tuberculosis and HIV co-infection

Tuberculosis (TB) and human immunodeficiency virus/acquired immunodeficiency syndrome (HIV/AIDS) constitute the main burden of infectious disease in resource-limited countries. In the individual host, the two pathogens, Mycobacterium tuberculosis and HIV, potentiate one another, accelerating the deterioration of immunological functions. In high-burden settings, HIV coinfection is the most important risk factor for developing active TB, which increases the susceptibility to primary infection or reinfection and also the risk of TB reactivation for patients with latent TB. M. tuberculosis infection also has a negative impact on the immune response to HIV, accelerating the progression from HIV infection to AIDS. The clinical management of HIV-associated TB includes the integration of effective anti-TB treatment, use of concurrent antiretroviral therapy (ART), prevention of HIV-related comorbidities, management of drug cytotoxicity, and prevention/treatment of immune reconstitution inflammatory syndrome (IRIS).

Biotechnological approaches for yield improvement of anticancer alkaloids in the plant Catharanthus roseus

Dissertação de mestrado em Biologia Molecular, Biotecnologia e Bioempreendedorismo em Plantas