Preparation, structural analysis and prebiotic potential of arabinoxylo-oligosaccharides

Arabinoxylo-oligosaccharides (AXOS) can be prepared enzymatically from arabinoxylans (AX) and AXOS are known to possess prebiotic potential. Here the structural features of 10 cereal AX were examined. AX were hydrolysed by Shearzyme® to prepare AXOS, and their structures were fully analysed. The prebiotic potential of the purified AXOS was studied in the fermentation experiments with bifidobacteria and faecal microbiota. In AX extracted from flours and bran, high amounts of a-L-Araf units are attached to the b-D-Xylp main chain, whereas moderate or low degree of substitution was found from husks, cob and straw. Nuclear magnetic resonance (NMR) spectroscopy showed that flour and bran AX contain high amounts of a-L-Araf units bound to the O-3 of b-D-Xylp residues and doubly substituted b-D-Xylp units with a-L-Araf substituents at O-2 and O-3. Barley husk and corn cob AX contain high amounts of b-D-Xylp(1→2)-a-L-Araf(1→3) side chains, which can also be found in AX from oat spelts and rice husks, and in lesser amounts in wheat straw AX. Rye and wheat flour AX and oat spelt AX were hydrolysed by Shearzyme® (with Aspergillus aculeatus GH10 endo-1,4-b-D-xylanase as the main enzyme) for the production of AXOS on a milligram scale. The AXOS were purified and their structures fully analysed, using mass spectrometry (MS) and 1D and 2D NMR spectroscopy. Monosubstituted xylobiose and xylotriose with a-L-Araf attached to the O-3 or O-2 of the nonreducing end b-D-Xylp unit and disubstituted AXOS with two a-L-Araf units at the nonreducing end b-D-Xylp unit of xylobiose or xylotriose were produced. Xylobiose with b-D-Xylp(1→2)-a-L-Araf(1→3) side chain was also purified. These AXOS were used as standards in further identification and quantification of corresponding AXOS from the hydrolysates in high-performance anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD) analysis. The prebiotic potential of AXOS was tested in in vitro fermentation experiments. Bifidobacterium adolescentis ATCC 15703 and B. longum ATCC 15707 utilized AXOS from the AX hydrolysates. Both species released L-arabinose from AXOS, but B. adolescentis consumed the XOS formed, whereas B. longum fermented the L-arabinose released. The third species tested, B. breve ATCC 15700, grew poorly on these substrates. When cultivated on pure AXOS, the bifidobacterial mixture utilized pure singly substituted AXOS almost completely, but no growth was detected with pure doubly substituted AXOS as substrates. However, doubly substituted AXOS were utilized from the mixture of xylose, XOS and AXOS. Faecal microbiota utilized both pure singly and doubly substituted AXOS. Thus, a mixture of singly and doubly substituted AXOS could function as a suitable, slowly fermenting prebiotic substance. This thesis contributes to the structural information on cereal AX and preparation of mono and doubly substituted AXOS from AX. Understanding the utilization strategies is fundamental in evaluating the prebiotic potential of AXOS. Further research is still required before AXOS can be used in applications for human consumption.

Trees of Panama and Costa Rica

Book Review

A linear sequence of extant families and genera of lycophytes and ferns

Throughout the history of the classification of extant ferns (monilophytes) and lycophytes, familial and generic concepts have been in great flux. For the organisation of lycophytes and ferns in herbaria, books, checklists, indices and spore banks and on the internet, this poses a problem, and a standardized linear sequence of these plants is therefore in great need. We provide here a linear classification to the extant lycophytes and ferns based on current phylogenetic knowledge; this provides a standardized guide for organisation of fern collections into a more natural sequence. Two new families, Diplaziopsidaceae and Rhachidosoraceae, are here introduced.

The diffusion and relaxation of Gaussian chains in narrow rectangular slits

The confinement of a polymer to volumes whose characteristic linear dimensions are comparable to or smaller than its bulk radius of gyration R-G,R-bulk can produce significant changes in its static and dynamic properties, with important implications for the understanding of single-molecule processes in biology and chemistry. In this paper, we present calculations of the effects of a narrow rectangular slit of thickness d on the scaling behavior of the diffusivity D and relaxation time tau(r) of a Gaussian chain of polymerization index N and persistence length l(0). The calculations are based on the Rouse-Zimm model of chain dynamics, with the pre-averaged hydrodynamic interaction being obtained from the solutions to Stokes equations for an incompressible fluid in a parallel plate geometry in the limit of small d. They go beyond de Gennes' purely phenomenological analysis of the problem based on blobs, which has so far been the only analytical route to the determination of chain scaling behavior for this particular geometry. The present model predicts that D similar to dN(-1) ln(N/d(2)) and tau(r) similar to N(2)d(-1) ln(N/d(2))(-1) in the regime of moderate confinement, where l(0) << d < R-G,R-bulk. The corresponding results for the blob model have exactly the same power law behavior, but contain no logarithmic corrections; the difference suggests that segments within a blob may actually be partially draining and not non-draining as generally assumed.

The diffusion and relaxation of Gaussian chains in narrow rectangular slits

The confinement of a polymer to volumes whose characteristic linear dimensions are comparable to or smaller than its bulk radius of gyration R-G,R-bulk can produce significant changes in its static and dynamic properties, with important implications for the understanding of single-molecule processes in biology and chemistry. In this paper, we present calculations of the effects of a narrow rectangular slit of thickness d on the scaling behavior of the diffusivity D and relaxation time tau(r) of a Gaussian chain of polymerization index N and persistence length l(0). The calculations are based on the Rouse-Zimm model of chain dynamics, with the pre-averaged hydrodynamic interaction being obtained from the solutions to Stokes equations for an incompressible fluid in a parallel plate geometry in the limit of small d. They go beyond de Gennes' purely phenomenological analysis of the problem based on blobs, which has so far been the only analytical route to the determination of chain scaling behavior for this particular geometry. The present model predicts that D similar to dN(-1) ln(N/d(2)) and tau(r) similar to N(2)d(-1) ln(N/d(2))(-1) in the regime of moderate confinement, where l(0) << d < R-G,R-bulk. The corresponding results for the blob model have exactly the same power law behavior, but contain no logarithmic corrections; the difference suggests that segments within a blob may actually be partially draining and not non-draining as generally assumed. (C) 2013 AIP Publishing LLC.

The search for exudates from Eurasian watermilfoil and hydrilla

Secondary metabolites are produced by aquatic plants, and in some instances, exudation of these metabolites into the surrounding water has been detected. To determine whether infestations of Eurasian watermilfoil or hydrilla produce such exudates, plant tissues and water samples were collected from laboratory cultures and pond populations and were analyzed using solid phase extraction, HPLC, and various methods of mass spectrometry including electrospray ionization, GC/MS, electron impact and chemical ionization. Previously reported compounds such as tellimagrandin II (from Eurasian watermilfoil) and a caffeic acid ester (from hvdrilla), along with a newly discovered flavonoid, cyanidin 3 dimalonyl glucoside (from hydrilla), were readily detected in plant tissues used in this research but were not detected in any of the water samples. If compounds are being released, as suggested by researchers using axenic cultures, we hypothesize that they may be rapidly degraded by bacteria and therefore undetectable.

Cruise Report 61S6 - Radioactivity

(PDF contains 2 pages.)

Biología pesquera de las lagunas Encadenadas del Sudoeste, provincia de Buenos Aires.

El objetivo es definir las variables biológicas del pejerrey (Odonthesthes bonariensis)de las lagunas del sistema para detectar el posible impacto de las obras hidraúlicas proyectadas en la región y evaluar las características de transición del área estudiada desde el punto de vista de la composición ictiofaunística. El presente artículo es una reedición del generado por el Departamento Científico Zoología Vertebrados (actual División Zoología Vertebrados), FCNyM, UNLP, en noviembre de 1993. El anexo 7.1-Fotografías fue omitido debido a la mala calidad de las imágenes.

Consideraciones sobre las percas (Percichthys colhuapiensis y P.trucha) de la Patagonia norte - Años 1955 a 1957. Comparaciones con material de años recientes.

Este trabajo se basa en los muestreos sobre las percas (Percichthys sp) realizado entre los años 1955 a 1957 por María Luisa Fuster de Plaza y Enrique E. Boschi, ambos investigadores se desempañaban en el Departamento de Investigaciones Pesqueras de la Dirección Nacional de Pesca, dependiente del Ministerio de Agricultura y Ganadería de la Nación de entonces. Las tareas se llevaron a cabo principalmente en varios cuerpos de agua léntica y lóticas de la región de la Patagonia Norte (Provincias de Río Negro, Neuquen y Chubut), y en la provincia de Mendoza. Consisten en datos morfométricos, desarrollo gonadal, fecundidad, contenidos alimenticios, planillas, dibujos, etc. de 80 ejemplares de percas. La autora tuvo a su cargo el análisis de los datos de esos muestreos y las comparaciones con estudios de material más reciente, correspondiente al lago Pellegrini, a partir de 1981.

Toxic effect of Raphia vinifera on fish leech (Piscicola geometra)

This study examines acute toxicity of Raphia vinifera on fish leech, Piscicola geometra. The leeches with a mean total length of (TL) 4.2+1.0cm were exposed to various concentrations of both crude powdered and ethanolic extracts of the botanical. Median lethal concentration (LC50) was determined with static-renewal tests using logarithmic and arithmetic graphic methods. The LC50 (for 96 hours of crude powdered (aqueous) extracts of the botanical on Piscicola geometra was 1.10 ppm arithmetically and 1.14ppm logarithmically. The 95% confidence limits was 0.10ppm arithmetically and 0.12ppm logarithmically. The LC50 of ethanolic extract of the poison at 96-h was 0.5ppm arithmetically and 0.48ppm logarithmically. The 95% confidence limits were less than 0.10ppm. The use of extracts of R. vinifera in the control of leeches in fish ponds is discussed

The relationship between some physicochemical parameters and plankton composition on fish production in ponds

The effect of physico-chemical parameters and plankton composition on fish production in ponds was investigated in six fish farms for eight weeks. The physicochemical parameters investigated were temperature=25-30 plus or minus C, transparency=0.45-0.57m, dissolved oxygen=3.0-10.9mg/l, pH=6.0-7.7, dissolved carbon dioxide=5.46-28.3mg/l, total alkalinity=44.37-80.0ppm, chemical oxygen demand=31.88-72.18mg/l and biological oxygen demand=0.66-48.34mg/l. Plankton composition varies and was made of four families of phytoplankton namely; Cyanophyceae, Chlorophyceae, Dinophyceae and Diatomida; and four families of zooplankton viz; Protozoa, Rotifera, Copepoda and Dinoflagellates. Farm 1 and 6 recorded the highest average weight of about 1.0kg and average total length of about 40.0cm for the two fish species. This study showed that fish yield was dependable on the quality and management of pond water characteristics