I. Studies on bacteriophage DNA's and minicircular DNA's in M. lysodeikticus and E. coli 15. II. Flow dichroism of DNA solutions

Part I

Chapter 1.....A physicochemical study of the DNA molecules from the three bacteriophages, N1, N5, and N6, which infect the bacterium, M. lysodeikticus, has been made. The molecular weights, as measured by both electron microscopy and sedimentation velocity, are 23 x 10⁶ for N5 DNA and 31 x 10⁶ for N1 and N6 DNA's. All three DNA's are capable of thermally reversible cyclization. N1 and N6 DNA's have identical or very similar base sequences as judged by membrane filter hybridization and by electron microscope heteroduplex studies. They have identical or similar cohesive ends. These results are in accord with the close biological relation between N1 and N6 phages. N5 DNA is not closely related to N1 or N6 DNA. The denaturation T_m of all three DNA's is the same and corresponds to a (GC) content of 70%. However, the buoyant densities in CsCl of Nl and N6 DNA's are lower than expected, corresponding to predicted GC contents of 64 and 67%. The buoyant densities in Cs₂SO₄ are also somewhat anomalous. The buoyant density anomalies are probably due to the presence of odd bases. However, direct base composition analysis of N1 DNA by anion exchange chromatography confirms a GC content of 70%, and, in the elution system used, no peaks due to odd bases are present.

Chapter 2.....A covalently closed circular DNA form has been observed as an intracellular form during both productive and abortive infection processes in M. lysodeikticus. This species has been isolated by the method of CsC1-ethidium bromide centrifugation and examined with an electron microscope.

Chapter 3.....A minute circular DNA has been discovered as a homogeneous population in M. lysodeikticus. Its length and molecular weight as determined by electron microscopy are 0.445 μ and 0.88 x 10⁶ daltons respectively. There is about one minicircle per bacterium.

Chapter 4.....Several strains of E. coli 15 harbor a prophage. Viral growth can be induced by exposing the host to mitomycin C or to uv irradiation. The coliphage 15 particles from E. coli 15 and E, coli 15 T^- appear as normal phage with head and tail structure; the particles from E. coli 15 TAU are tailless. The complete particles exert a colicinogenic activity on E.coli 15 and 15 T^-, the tailless particles do not. No host for a productive viral infection has been found and the phage may be defective. The properties of the DNA of the virus have been studied, mainly by electron microscopy. After induction but before lysis, a closed circular DNA with a contour length of about 11.9 μ is found in the bacterium; the mature phage DNA is a linear duplex and 7.5% longer than the intracellular circular form. This suggests the hypothesis that the mature phage DNA is terminally repetitious and circularly permuted. The hypothesis was confirmed by observing that denaturation and renaturation of the mature phage DNA produce circular duplexes with two single-stranded branches corresponding to the terminal repetition. The contour length of the mature phage DNA was measured relative to φX RFII DNA and λ DNA; the calculated molecular weight is 27 x 10⁶. The length of the single-stranded terminal repetition was compared to the length of φX 174 DNA under conditions where single-stranded DNA is seen in an extended form in electron micrographs. The length of the terminal repetition is found to be 7.4% of the length of the nonrepetitious part of the coliphage 15 DNA. The number of base pairs in the terminal repetition is variable in different molecules, with a fractional standard deviation of 0.18 of the average number in the terminal repetition. A new phenomenon termed "branch migration" has been discovered in renatured circular molecules; it results in forked branches, with two emerging single strands, at the position of the terminal repetition. The distribution of branch separations between the two terminal repetitions in the population of renatured circular molecules was studied. The observed distribution suggests that there is an excluded volume effect in the renaturation of a population of circularly permuted molecules such that strands with close beginning points preferentially renature with each other. This selective renaturation and the phenomenon of branch migration both affect the distribution of branch separations; the observed distribution does not contradict the hypothesis of a random distribution of beginning points around the chromosome.

Chapter 5....Some physicochemical studies on the minicircular DNA species in E. coli 15 (0.670 μ, 1.47 x 10⁶ daltons) have been made. Electron microscopic observations showed multimeric forms of the minicircle which amount to 5% of total DNA species and also showed presumably replicating forms of the minicircle. A renaturation kinetic study showed that the minicircle is a unique DNA species in its size and base sequence. A study on the minicircle replication has been made under condition in which host DNA synthesis is synchronized. Despite experimental uncertainties involved, it seems that the minicircle replication is random and the number of the minicircles increases continuously throughout a generation of the host, regardless of host DNA synchronization.

Part II

The flow dichroism of dilute DNA solutions (A₂₆₀≈0.1) has been studied in a Couette-type apparatus with the outer cylinder rotating and with the light path parallel to the cylinder axis. Shear gradients in the range of 5-160 sec.^-1 were studied. The DNA samples were whole, "half," and "quarter" molecules of T4 bacteriophage DNA, and linear and circular λb₂b₅c DNA. For the linear molecules, the fractional flow dichroism is a linear function of molecular weight. The dichroism for linear A DNA is about 1.8 that of the circular molecule. For a given DNA, the dichroism is an approximately linear function of shear gradient, but with a slight upward curvature at low values of G, and some trend toward saturation at larger values of G. The fractional dichroism increases as the supporting electrolyte concentration decreases.

The periodicity in the consumption of oxygen in Asellus aquaticus [Translation from: Vestnik ceskoslovenske zoologicke Spolecnosti, 15, 1, 89-97, 1951]

The consumption of oxygen in Asellus aquaticus was measured to find if there existed a periodicity in the consumption of oxygen and how this showed itself during the course of the day, year and in various experimental conditions. From the figures obtained comparative values were calculated and from these curves were plotted of the changes in the consumption of oxygen during the day and year.

Observation and interpretation of tectonic strain release mechanisms

In four chapters various aspects of earthquake source are studied.

Chapter I

Surface displacements that followed the Parkfield, 1966, earthquakes were measured for two years with six small-scale geodetic networks straddling the fault trace. The logarithmic rate and the periodic nature of the creep displacement recorded on a strain meter made it possible to predict creep episodes on the San Andreas fault. Some individual earthquakes were related directly to surface displacement, while in general, slow creep and aftershock activity were found to occur independently. The Parkfield earthquake is interpreted as a buried dislocation.

Chapter II

The source parameters of earthquakes between magnitude 1 and 6 were studied using field observations, fault plane solutions, and surface wave and S-wave spectral analysis. The seismic moment, M_O, was found to be related to local magnitude, M_L, by log M_O = 1.7 M_L + 15.1. The source length vs magnitude relation for the San Andreas system found to be: M_L = 1.9 log L - 6.7. The surface wave envelope parameter AR gives the moment according to log M_O = log AR₃₀₀ + 30.1, and the stress drop, τ, was found to be related to the magnitude by τ = 0.54 M - 2.58. The relation between surface wave magnitude M_S and M_L is proposed to be M_S = 1.7 M_L - 4.1. It is proposed to estimate the relative stress level (and possibly the strength) of a source-region by the amplitude ratio of high-frequency to low-frequency waves. An apparent stress map for Southern California is presented.

Chapter III

Seismic triggering and seismic shaking are proposed as two closely related mechanisms of strain release which explain observations of the character of the P wave generated by the Alaskan earthquake of 1964, and distant fault slippage observed after the Borrego Mountain, California earthquake of 1968. The Alaska, 1964, earthquake is shown to be adequately described as a series of individual rupture events. The first of these events had a body wave magnitude of 6.6 and is considered to have initiated or triggered the whole sequence. The propagation velocity of the disturbance is estimated to be 3.5 km/sec. On the basis of circumstantial evidence it is proposed that the Borrego Mountain, 1968, earthquake caused release of tectonic strain along three active faults at distances of 45 to 75 km from the epicenter. It is suggested that this mechanism of strain release is best described as "seismic shaking."

Chapter IV

The changes of apparent stress with depth are studied in the South American deep seismic zone. For shallow earthquakes the apparent stress is 20 bars on the average, the same as for earthquakes in the Aleutians and on Oceanic Ridges. At depths between 50 and 150 km the apparent stresses are relatively high, approximately 380 bars, and around 600 km depth they are again near 20 bars. The seismic efficiency is estimated to be 0.1. This suggests that the true stress is obtained by multiplying the apparent stress by ten. The variation of apparent stress with depth is explained in terms of the hypothesis of ocean floor consumption.

Design of a timber Howe truss highway bridge

The span of the bridge was assumed as 100 feet. The type of bridge used is the timber Howe Truss. The height of truss was taken as 20 feet between center lines of top and bottom chords. The width was taken as 18 feet center to center of trusses. The truss was divided up into five panels 20 feet long.

It was designed according to the "General Specifications for Steel Highway Bridges" by Ketchum. For the live load for the floor and its supports, a load of 80 pounds per square foot of total floor surface or a 15 ton traction engine with axles 10 feet centers and 6 feet gage, two thirds of load to be carried by rear axles.

For the truss a load of 75 pounds per square foot of floor surface.

For the wind load the bottom lateral bracing is to be designed to resist a lateral wind load of 300 pounds per foot of span; 150 pounds of this to be treated as a moving load.

The top lateral bracing is to be designed to resist a lateral wind force of 150 pounds per foot of span.

The timber to be used in the bridge is to be Douglas fir.

The unit stresses used for timber are those of the American Railway Engineering Association.

Los artefactos retocados del nivel C4d1j de Isturitz: estudio arqueopetrológico desde la Tipología Analítica

Homenaje a Georges Laplace, realizado en Vitoria-Gasteiz el 13, 14 y 15 de noviembre de 2012. Edición a cargo de Aitor Calvo, Aitor Sánchez, Maite García-Rojas y Mónica Alonso-Eguíluz.

Efficacy and safety of autologous platelet rich plasma for the treatment of vascular ulcers in primary care: Phase III study

Background: Vascular ulcers are commonly seen in daily practice at all levels of care and have great impact at personal, professional and social levels with a high cost in terms of human and material resources. Given that the application of autologous platelet rich plasma has been shown to decrease healing times in various different studies in the hospital setting, we considered that it would be interesting to assess the efficacy and feasibility of this treatment in primary care. The objectives of this study are to assess the potential efficacy and safety of autologous platelet rich plasma for the treatment of venous ulcers compared to the conventional treatment (moist wound care) in primary care patients with chronic venous insufficiency (C, clinical class, E, aetiology, A, anatomy and P, pathophysiology classification C6). Design: We will conduct a phase III, open-label, parallel-group, multicentre, randomized study. The subjects will be 150 patients aged between 40 and 100 years of age with an at least 2-month history of a vascular venous ulcer assigned to ten primary care centres. For the treatment with autologous platelet rich plasma, all the following tasks will be performed in the primary care setting: blood collection, centrifugation, separation of platelet rich plasma, activation of coagulation adding calcium chloride and application of the PRP topically after gelification. The control group will receive standard moist wound care. The outcome variables to be measured at baseline, and at weeks 5 and 9 later include: reduction in the ulcer area, Chronic Venous Insufficiency Quality of Life Questionnaire score, and percentage of patients who require wound care only once a week. Discussion: The results of this study will be useful to improve the protocol for using platelet rich plasma in chronic vascular ulcers and to favour wider use of this treatment in primary care.

Análisis comparativo de traducciones comerciales en medios audiovisuales. Subtitulado I. “Hubble: 15 años de descubrimientos”

En este trabajo se realiza un estudio descriptivo-comparativo de la traducción de los subtítulos correspondientes al documental de divulgación científica titulado Hubble: 15 Years of Discovery (2005). Antes de realizar el análisis comparativo del corpus se sitúa la traducción comercial de este documento en el campo de estudio que abarca la traducción audiovisual, y en particular en el relativo a la subtitulación. El corpus textual seleccionado pertenece al género textual de la divulgación científica cuyas características se analizan. Tras abordar la cuestión de la selección del texto objeto de estudio, se detalla el proceso de recopilación del corpus, prestando especial atención a la elección del programa que se ha utilizado para la extracción de subtítulos a partir de la copia comercial del texto seleccionado (Hubble, 2005) en formato DVD. Se da cuenta de la compilación del corpus en forma de tabla que contiene el total de unidades bitextuales (subtítulos en inglés y español, identificados por los respectivos códigos de tiempo). El análisis del corpus bi-textual correspondiente a los subtítulos del documental (20 000 palabras, 715 SubtO y 724 SubtM), se efectúa mediante la clasificación de todos aquellos procedimientos de traducción observados. La taxonomía empleada para la clasificación de dichos procedimientos permite establecer cuatro grandes categorías: modulación, supresión, inequivalencia y adición. Dicha división cuatripartita da pie para establecer aquellas subcategorías que reflejan y ayudan a describir los procedimientos de traducción identificados en el proceso de análisis comparativo del corpus bitextual. Por razones de espacio, en la redacción final del presente trabajo se ofrece únicamente una muestra del conjunto total de ejemplos analizados para la realización de este estudio. Se pretende que dicha muestra represente por orden de incidencia, todos los fenómenos de traducción identificados y descritos, utilizando la taxonomía seleccionada, en el proceso de comparación del doblaje original inglés de Hubble y la traducción al español (subtítulos). Por último, se han recogido los datos relativos a la frecuencia de aparición de cada uno de los procedimientos de traducción para poder realizar una valoración global de los resultados obtenidos y relacionarlos con el género textual al que pertenece el documental objeto de estudio.

Composição corporal de indivíduos com lesão medular cervical: influência do exercício físico e comparação de métodos

Objetivo: Comparar a composição corporal total e regional e a distribuição de gordura de homens com lesão medular LM cervical fisicamente ativos e não ativos, e sua relação com a concentração de proteína C reativa ultra-sensível (PCR-us). Além disso, identificar um protocolo de impedância bioelétrica (BIA) que forneça resultados de percentual de massa gorda (MG) total concordantes com os obtidos pelo método de referência, absorciometria de dupla emissão de raios-X (DXA). Métodos: Os participantes possuíam lesão medular entre C5-C7 e foram classificados em ativos (n=15) e não ativos (n=10). Consideraram-se ativos os indivíduos que praticavam exercícios físicos há pelo menos três meses, três vezes por semana ou mais, totalizando tempo mínimo de 150 minutos de atividades físicas por semana. A determinação da composição corporal total e regional (braços, pernas e tronco) foi realizada por DXA. A PCR-us foi mensurada por imunoturbidimetria. Os protocolos de BIA testados foram: a) para indivíduos com LM (KOCINA & HEYWARD, 1997); b) para grupos que incluem idosos (GRAY et al 1989); c) validado para idosos brasileiros (DEY et al, 2003). A análise estatística dos dados incluiu ANCOVA para comparar a massa corporal total, composição corporal e PCR-us entre os grupos; e correlação parcial com correção pelo tempo de lesão (TL) para identificar a associação de exercício físico com MG e da PCR-us com exercício físico e MG tronco. A comparação dos resultados de percentual de gordura obtidos por DXA e cada um dos protocolos de BIA foi realizada por ANOVA one way e Dunnet pós teste. A análise de Bland-Altman foi realizada para verificação da concordância entre os métodos testados. Conclusão: O exercício físico praticado de forma contínua e controlada é importante para manter menores valores de MG e evitar acúmulo de gordura na região do tronco. A melhor composição corporal e distribuição de gordura corporal observadas no grupo ativo possivelmente levaram à menor concentração de PCR-us sérica. Juntas, estas adaptações provavelmente contribuíram para a redução dos riscos de desenvolvimento de doenças cardiometabólicas. A semelhança na modificação da composição corporal entre idosos e indivíduos com LM sugere que protocolos de BIA propostos para idosos podem ser adequados para avaliação da composição corporal de indivíduos com lesão medular cervical.

Time response of optical switching properties of Sb thin films under focused laser pulses

The time response of optical switching properties of Sb thin films under focused laser pulses is investigated. The results show that the response course can be divided into onset, opening, and closing stages. Formulas for their lengths are given. The onset and opening times decrease with increasing pumping light power density. The closing time is about 150 ns. For optical memory, if the power density of the readout and recording lasers changes from 5 x 10(9) to 15 x 10(9) W/m(2), the onset time changes from 2.5 to 0.30 mus, and the opening time is on the nanosecond scale. (C) 2003 Society of Photo-Optical Instrumentation Engineers.